Wall clock time and date at job start Tue Mar 31 2020 13:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33040 * 119.99914 * 2 1 4 4 C 1.50691 * 120.00120 * 359.97438 * 3 2 1 5 5 C 1.47038 * 119.99933 * 179.97438 * 3 2 1 6 6 O 1.21609 * 119.99979 * 359.97438 * 5 3 2 7 7 N 1.34773 * 120.00093 * 179.97438 * 5 3 2 8 8 C 1.38346 * 120.00108 * 184.56834 * 7 5 3 9 9 C 1.39280 * 126.43758 * 258.13036 * 8 7 5 10 10 C 1.46722 * 126.51311 * 359.97438 * 9 8 7 11 11 O 1.21588 * 120.00431 * 0.02562 * 10 9 8 12 12 O 1.34841 * 119.99916 * 179.97438 * 10 9 8 13 13 C 1.45192 * 117.00251 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47177 * 180.02562 * 13 12 10 15 15 C 1.41476 * 106.96559 * 179.97438 * 9 8 7 16 16 N 1.30303 * 108.17700 * 0.02562 * 15 9 8 17 17 N 1.34796 * 126.43874 * 78.13270 * 8 7 5 18 18 C 1.46503 * 125.74142 * 359.97438 * 17 8 7 19 19 C 1.50697 * 109.47271 * 274.65026 * 18 17 8 20 20 H 1.08000 * 119.99862 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00225 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99852 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00254 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46688 * 60.00616 * 23 21 19 25 25 H 1.48502 * 109.47027 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47337 * 300.00365 * 23 21 19 27 27 H 1.09001 * 109.47286 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47283 * 300.00661 * 1 2 3 29 29 H 1.09001 * 109.46864 * 60.00639 * 1 2 3 30 30 H 1.08005 * 120.00360 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47826 * 270.00376 * 4 3 2 32 32 H 1.08999 * 109.47280 * 30.00679 * 4 3 2 33 33 H 1.09007 * 109.47455 * 150.00681 * 4 3 2 34 34 H 0.97001 * 120.00285 * 4.56400 * 7 5 3 35 35 H 1.09000 * 109.47066 * 300.00539 * 13 12 10 36 36 H 1.09010 * 109.47011 * 60.00023 * 13 12 10 37 37 H 1.09007 * 109.47090 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47408 * 300.00140 * 14 13 12 39 39 H 1.08997 * 109.47130 * 60.00297 * 14 13 12 40 40 H 1.07994 * 125.90668 * 180.02562 * 15 9 8 41 41 H 1.08994 * 109.47184 * 34.65420 * 18 17 8 42 42 H 1.09002 * 109.46420 * 154.65310 * 18 17 8 43 43 H 0.96998 * 119.99627 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1721 1.1522 0.0000 4 6 1.4187 2.4572 -0.0006 5 6 3.6425 1.1522 0.0006 6 8 4.2506 0.0990 0.0015 7 7 4.3164 2.3193 0.0000 8 6 5.6966 2.3212 -0.0948 9 6 6.5974 2.5097 0.9506 10 6 6.2628 2.7441 2.3597 11 8 5.0990 2.7882 2.7091 12 8 7.2459 2.9098 3.2676 13 6 6.8414 3.1372 4.6433 14 6 8.0844 3.3015 5.5200 15 6 7.8963 2.4320 0.3953 16 7 7.7792 2.2143 -0.8841 17 7 6.4222 2.1410 -1.2164 18 6 5.8810 1.9067 -2.5575 19 6 5.6070 0.4360 -2.7388 20 1 5.8148 -0.2551 -1.9352 21 6 5.0900 -0.0273 -3.9300 22 7 4.8364 0.8143 -4.9083 23 14 4.7497 -1.8503 -4.1544 24 1 3.7648 -2.2988 -3.1375 25 1 4.2011 -2.0877 -5.5139 26 1 6.0128 -2.6135 -3.9906 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 2.0470 -0.9353 0.0004 31 1 1.2373 2.7717 -1.0283 32 1 0.4661 2.3270 0.5130 33 1 2.0076 3.2171 0.5132 34 1 3.8337 3.1581 0.0661 35 1 6.2356 4.0417 4.6991 36 1 6.2576 2.2867 4.9957 37 1 7.7807 3.4718 6.5529 38 1 8.6905 2.3973 5.4642 39 1 8.6677 4.1521 5.1675 40 1 8.8243 2.5352 0.9379 41 1 4.9536 2.4666 -2.6779 42 1 6.6040 2.2363 -3.3037 43 1 4.4730 0.4883 -5.7465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093256417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:00 Heat of formation + Delta-G solvation = -37.218209 kcal Electronic energy + Delta-G solvation = -27785.920873 eV Core-core repulsion = 23833.390856 eV Total energy + Delta-G solvation = -3952.530018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13796 -39.62292 -39.08256 -36.16386 -35.34536 -34.47389 -33.75490 -31.95143 -31.43737 -29.81740 -28.55795 -27.37523 -26.04798 -24.31393 -23.08717 -22.54693 -21.95742 -20.36230 -19.48741 -18.64522 -17.57558 -17.00390 -16.81343 -16.44153 -16.26492 -15.75752 -14.98781 -14.64905 -14.60954 -14.16914 -13.75109 -13.65433 -13.59395 -13.28615 -13.16976 -13.04805 -12.74615 -12.52108 -12.27833 -12.25264 -11.97949 -11.84485 -11.79943 -11.58038 -11.14716 -11.08641 -10.93034 -10.72269 -10.38013 -10.28210 -9.94591 -9.86982 -9.57509 -9.19934 -8.83563 -8.68014 -8.61537 -8.13288 -6.26116 -4.30814 1.60680 1.76676 2.57755 2.75559 3.11075 3.28454 3.29448 3.37682 3.59474 3.65164 3.80452 4.34621 4.88544 4.90981 4.94491 5.03897 5.05990 5.12760 5.25058 5.27086 5.32627 5.34293 5.54011 5.57239 5.72248 5.72671 5.73268 5.79359 5.88666 5.89878 6.04263 6.10844 6.40801 6.59642 6.68736 6.70589 6.78355 6.84214 7.06727 7.54720 7.70181 7.77724 7.82411 8.15400 8.28286 8.62491 8.79238 9.35826 10.82510 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.004935 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.922441 B = 5672.097101 C = 7367.658568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 C -0.177 4.177 4 C -0.117 4.117 5 C 0.571 3.429 6 O -0.500 6.500 7 N -0.653 5.653 8 C 0.388 3.612 9 C -0.306 4.306 10 C 0.551 3.449 11 O -0.526 6.526 12 O -0.357 6.357 13 C 0.065 3.935 14 C -0.151 4.151 15 C 0.088 3.912 16 N -0.281 5.281 17 N -0.302 5.302 18 C 0.250 3.750 19 C -0.528 4.528 20 H 0.075 0.925 21 C 0.068 3.932 22 N -0.896 5.896 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.414 0.586 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.190 0.810 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 6.360 14.408 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 C -0.180 4.180 4 C -0.174 4.174 5 C 0.360 3.640 6 O -0.373 6.373 7 N -0.308 5.308 8 C 0.158 3.842 9 C -0.322 4.322 10 C 0.398 3.602 11 O -0.417 6.417 12 O -0.274 6.274 13 C -0.009 4.009 14 C -0.208 4.208 15 C -0.099 4.099 16 N -0.102 5.102 17 N -0.081 5.081 18 C 0.133 3.867 19 C -0.567 4.567 20 H 0.093 0.907 21 C -0.135 4.135 22 N -0.534 5.534 23 Si 0.733 3.267 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.144 0.856 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.254 0.746 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.207 0.793 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.463 5.406 13.049 14.543 hybrid contribution -0.888 -0.417 0.544 1.122 sum -4.352 4.990 13.593 15.120 Atomic orbital electron populations 1.20954 0.92202 1.02819 1.02395 1.23526 0.96098 0.98032 0.92064 1.21200 0.91902 0.96854 1.08026 1.20831 0.99894 0.94056 1.02602 1.18262 0.87683 0.82799 0.75244 1.90837 1.69613 1.30591 1.46264 1.42227 1.02088 1.10300 1.76208 1.17571 0.83402 0.96482 0.86754 1.18858 0.93788 1.29358 0.90183 1.19798 0.82899 0.72363 0.85135 1.90792 1.20459 1.49301 1.81120 1.86554 1.38930 1.83190 1.18767 1.22899 0.97854 1.01603 0.78584 1.21791 0.97365 1.03327 0.98356 1.23828 0.97105 0.97425 0.91529 1.77223 0.94617 1.23194 1.15197 1.49993 1.03188 1.45730 1.09172 1.19939 0.94822 0.99020 0.72924 1.21290 1.43669 0.91063 1.00644 0.90723 1.24861 0.94748 0.98770 0.95110 1.69918 1.43845 1.34798 1.04822 0.86398 0.79123 0.84168 0.77026 1.19697 1.21119 1.19923 0.91597 0.90833 0.90750 0.85606 0.90679 0.90977 0.91789 0.74612 0.91573 0.91569 0.90591 0.91503 0.91529 0.79301 0.93088 0.92022 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.91 36.00 0.32 -1.03 16 2 C -0.08 -1.17 9.84 -36.12 -0.36 -1.53 16 3 C -0.18 -2.87 6.00 -102.87 -0.62 -3.48 16 4 C -0.12 -1.39 9.18 36.00 0.33 -1.06 16 5 C 0.57 11.77 7.70 -12.69 -0.10 11.67 16 6 O -0.50 -12.44 14.92 5.27 0.08 -12.37 16 7 N -0.65 -12.50 4.47 -12.17 -0.05 -12.55 16 8 C 0.39 8.22 6.48 -153.51 -0.99 7.22 16 9 C -0.31 -5.96 6.15 -104.85 -0.64 -6.61 16 10 C 0.55 9.95 7.94 34.16 0.27 10.22 16 11 O -0.53 -10.16 16.09 -19.33 -0.31 -10.47 16 12 O -0.36 -5.40 10.07 -40.88 -0.41 -5.81 16 13 C 0.06 0.75 6.20 37.16 0.23 0.99 16 14 C -0.15 -1.26 10.29 37.16 0.38 -0.87 16 15 C 0.09 1.60 11.86 -16.97 -0.20 1.40 16 16 N -0.28 -6.10 12.47 30.88 0.39 -5.71 16 17 N -0.30 -6.98 3.58 -61.14 -0.22 -7.20 16 18 C 0.25 6.36 6.08 -5.19 -0.03 6.32 16 19 C -0.53 -14.82 8.87 -34.44 -0.31 -15.13 16 20 H 0.07 2.26 7.07 -52.49 -0.37 1.89 16 21 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 22 N -0.90 -25.25 13.29 55.43 0.74 -24.51 16 23 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.66 7.40 -51.93 -0.38 0.27 16 29 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.13 2.13 7.49 -52.48 -0.39 1.74 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.69 6.49 -51.93 -0.34 0.36 16 33 H 0.06 0.71 6.64 -51.92 -0.34 0.36 16 34 H 0.41 6.49 6.89 -40.82 -0.28 6.21 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.19 2.65 8.06 -52.49 -0.42 2.22 16 41 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 376.39 15.07 5.67 5.67 Total: -1.00 -34.10 376.39 -6.85 -40.95 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.89 Total: 4.99 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -1.81 Total: 9.91 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.85 Total: -49.98 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.64 Total: -28.64 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.10 -6.85 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093256417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.727 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds