Wall clock time and date at job start Tue Mar 31 2020 13:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33040 * 119.99914 * 2 1 4 4 C 1.50691 * 120.00120 * 359.97438 * 3 2 1 5 5 C 1.47038 * 119.99933 * 179.97438 * 3 2 1 6 6 O 1.21609 * 119.99979 * 359.97438 * 5 3 2 7 7 N 1.34773 * 120.00093 * 179.97438 * 5 3 2 8 8 C 1.38346 * 120.00108 * 184.56834 * 7 5 3 9 9 C 1.39280 * 126.43758 * 258.13036 * 8 7 5 10 10 C 1.46722 * 126.51311 * 359.97438 * 9 8 7 11 11 O 1.21588 * 120.00431 * 0.02562 * 10 9 8 12 12 O 1.34841 * 119.99916 * 179.97438 * 10 9 8 13 13 C 1.45192 * 117.00251 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47177 * 180.02562 * 13 12 10 15 15 C 1.41476 * 106.96559 * 179.97438 * 9 8 7 16 16 N 1.30303 * 108.17700 * 0.02562 * 15 9 8 17 17 N 1.34796 * 126.43874 * 78.13270 * 8 7 5 18 18 C 1.46503 * 125.74142 * 359.97438 * 17 8 7 19 19 C 1.50697 * 109.47271 * 274.65026 * 18 17 8 20 20 H 1.08000 * 119.99862 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00225 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99852 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00254 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46688 * 60.00616 * 23 21 19 25 25 H 1.48502 * 109.47027 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47337 * 300.00365 * 23 21 19 27 27 H 1.09001 * 109.47286 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47283 * 300.00661 * 1 2 3 29 29 H 1.09001 * 109.46864 * 60.00639 * 1 2 3 30 30 H 1.08005 * 120.00360 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47826 * 270.00376 * 4 3 2 32 32 H 1.08999 * 109.47280 * 30.00679 * 4 3 2 33 33 H 1.09007 * 109.47455 * 150.00681 * 4 3 2 34 34 H 0.97001 * 120.00285 * 4.56400 * 7 5 3 35 35 H 1.09000 * 109.47066 * 300.00539 * 13 12 10 36 36 H 1.09010 * 109.47011 * 60.00023 * 13 12 10 37 37 H 1.09007 * 109.47090 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47408 * 300.00140 * 14 13 12 39 39 H 1.08997 * 109.47130 * 60.00297 * 14 13 12 40 40 H 1.07994 * 125.90668 * 180.02562 * 15 9 8 41 41 H 1.08994 * 109.47184 * 34.65420 * 18 17 8 42 42 H 1.09002 * 109.46420 * 154.65310 * 18 17 8 43 43 H 0.96998 * 119.99627 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1721 1.1522 0.0000 4 6 1.4187 2.4572 -0.0006 5 6 3.6425 1.1522 0.0006 6 8 4.2506 0.0990 0.0015 7 7 4.3164 2.3193 0.0000 8 6 5.6966 2.3212 -0.0948 9 6 6.5974 2.5097 0.9506 10 6 6.2628 2.7441 2.3597 11 8 5.0990 2.7882 2.7091 12 8 7.2459 2.9098 3.2676 13 6 6.8414 3.1372 4.6433 14 6 8.0844 3.3015 5.5200 15 6 7.8963 2.4320 0.3953 16 7 7.7792 2.2143 -0.8841 17 7 6.4222 2.1410 -1.2164 18 6 5.8810 1.9067 -2.5575 19 6 5.6070 0.4360 -2.7388 20 1 5.8148 -0.2551 -1.9352 21 6 5.0900 -0.0273 -3.9300 22 7 4.8364 0.8143 -4.9083 23 14 4.7497 -1.8503 -4.1544 24 1 3.7648 -2.2988 -3.1375 25 1 4.2011 -2.0877 -5.5139 26 1 6.0128 -2.6135 -3.9906 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 2.0470 -0.9353 0.0004 31 1 1.2373 2.7717 -1.0283 32 1 0.4661 2.3270 0.5130 33 1 2.0076 3.2171 0.5132 34 1 3.8337 3.1581 0.0661 35 1 6.2356 4.0417 4.6991 36 1 6.2576 2.2867 4.9957 37 1 7.7807 3.4718 6.5529 38 1 8.6905 2.3973 5.4642 39 1 8.6677 4.1521 5.1675 40 1 8.8243 2.5352 0.9379 41 1 4.9536 2.4666 -2.6779 42 1 6.6040 2.2363 -3.3037 43 1 4.4730 0.4883 -5.7465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093256417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:59 Heat of formation + Delta-G solvation = -58.399689 kcal Electronic energy + Delta-G solvation = -27786.839371 eV Core-core repulsion = 23833.390856 eV Total energy + Delta-G solvation = -3953.448516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.73410 -40.98832 -40.63135 -37.48501 -36.54582 -36.12554 -35.74027 -33.66685 -32.53309 -31.11123 -29.83403 -29.26428 -27.15024 -25.93519 -24.65215 -23.86784 -23.27178 -21.85237 -21.10468 -20.04825 -19.15793 -18.74362 -18.33543 -17.98393 -17.45154 -17.22277 -16.77770 -16.36144 -16.04023 -15.70284 -15.35355 -14.92526 -14.86733 -14.48156 -14.38406 -14.35322 -14.19461 -13.78341 -13.52663 -13.40185 -13.38234 -13.10426 -12.87633 -12.84143 -12.82719 -12.53449 -12.32046 -12.31568 -12.21386 -11.92052 -11.44557 -11.40785 -11.22124 -10.82296 -10.78378 -10.40545 -9.99584 -9.77906 -8.40229 -6.51574 0.11839 0.36063 1.03598 1.21510 1.29467 1.31196 1.41770 1.78609 2.07518 2.17126 2.24361 2.34017 2.92139 3.56566 3.68426 3.87258 3.96478 4.08029 4.14984 4.17947 4.25998 4.39442 4.43304 4.47995 4.67287 4.73375 4.79143 4.81454 4.89831 4.95010 4.99592 5.00199 5.04132 5.12794 5.19131 5.43545 5.44550 5.49280 5.51218 5.61332 5.71053 5.89698 6.25046 6.53458 6.61739 6.84571 7.07900 7.18239 8.67958 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.004935 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.922441 B = 5672.097101 C = 7367.658568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.110 4.110 5 C 0.560 3.440 6 O -0.557 6.557 7 N -0.645 5.645 8 C 0.374 3.626 9 C -0.311 4.311 10 C 0.555 3.445 11 O -0.542 6.542 12 O -0.352 6.352 13 C 0.055 3.945 14 C -0.144 4.144 15 C 0.107 3.893 16 N -0.313 5.313 17 N -0.327 5.327 18 C 0.269 3.731 19 C -0.539 4.539 20 H 0.046 0.954 21 C 0.031 3.969 22 N -0.914 5.914 23 Si 0.957 3.043 24 H -0.277 1.277 25 H -0.265 1.265 26 H -0.276 1.276 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.428 0.572 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.235 0.765 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 6.996 16.009 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.091 4.091 3 C -0.203 4.203 4 C -0.166 4.166 5 C 0.352 3.648 6 O -0.435 6.435 7 N -0.301 5.301 8 C 0.145 3.855 9 C -0.327 4.327 10 C 0.402 3.598 11 O -0.434 6.434 12 O -0.269 6.269 13 C -0.018 4.018 14 C -0.201 4.201 15 C -0.079 4.079 16 N -0.134 5.134 17 N -0.105 5.105 18 C 0.151 3.849 19 C -0.577 4.577 20 H 0.064 0.936 21 C -0.170 4.170 22 N -0.552 5.552 23 Si 0.782 3.218 24 H -0.203 1.203 25 H -0.189 1.189 26 H -0.201 1.201 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.271 0.729 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.251 0.749 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.468 6.096 14.666 16.499 hybrid contribution -0.519 -0.605 0.218 0.827 sum -4.987 5.491 14.884 16.630 Atomic orbital electron populations 1.21038 0.88246 1.04312 1.04099 1.23831 0.98816 0.96460 0.90014 1.21399 0.89497 0.99439 1.09933 1.20874 1.00670 0.91608 1.03456 1.19172 0.89624 0.82175 0.73874 1.90795 1.71080 1.32391 1.49188 1.42281 1.01556 1.10862 1.75410 1.18016 0.84469 0.96202 0.86796 1.19149 0.93952 1.28663 0.90921 1.19560 0.83084 0.72084 0.85029 1.90777 1.21213 1.49973 1.81392 1.86541 1.37835 1.82494 1.20053 1.23307 0.99914 1.01737 0.76889 1.21818 0.95773 1.03606 0.98869 1.24541 0.98305 0.94645 0.90394 1.77171 0.94115 1.24973 1.17095 1.49718 1.04058 1.47927 1.08821 1.19413 0.93971 0.97392 0.74172 1.21250 1.44292 0.92015 1.00122 0.93608 1.25501 0.94404 1.02320 0.94789 1.69967 1.43942 1.36164 1.05134 0.85625 0.78682 0.79893 0.77642 1.20299 1.18903 1.20109 0.90426 0.88205 0.89377 0.88602 0.90152 0.87929 0.91276 0.72924 0.90921 0.92001 0.87983 0.91509 0.90886 0.74901 0.93700 0.93890 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.91 71.23 0.63 -1.60 16 2 C -0.07 -2.13 9.84 24.52 0.24 -1.89 16 3 C -0.20 -6.46 6.00 -18.72 -0.11 -6.58 16 4 C -0.11 -2.40 9.18 71.23 0.65 -1.75 16 5 C 0.56 23.92 7.70 86.55 0.67 24.58 16 6 O -0.56 -29.29 14.92 -4.06 -0.06 -29.35 16 7 N -0.65 -25.40 4.47 -310.69 -1.39 -26.78 16 8 C 0.37 16.29 6.48 132.59 0.86 17.15 16 9 C -0.31 -12.12 6.15 -20.01 -0.12 -12.24 16 10 C 0.56 19.65 7.94 70.04 0.56 20.20 16 11 O -0.54 -20.65 16.09 19.55 0.31 -20.34 16 12 O -0.35 -10.05 10.07 -57.53 -0.58 -10.63 16 13 C 0.05 1.17 6.20 71.98 0.45 1.62 16 14 C -0.14 -1.97 10.29 71.98 0.74 -1.23 16 15 C 0.11 3.87 11.86 85.72 1.02 4.88 16 16 N -0.31 -13.81 12.47 -56.23 -0.70 -14.51 16 17 N -0.33 -15.66 3.58 -347.36 -1.24 -16.90 16 18 C 0.27 14.32 6.08 85.63 0.52 14.84 16 19 C -0.54 -31.47 8.87 25.60 0.23 -31.24 16 20 H 0.05 2.92 7.07 -2.91 -0.02 2.90 16 21 C 0.03 1.76 5.46 84.65 0.46 2.22 16 22 N -0.91 -52.11 13.29 21.45 0.28 -51.83 16 23 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 24 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.38 7.40 -2.39 -0.02 1.37 16 29 H 0.09 1.46 8.10 -2.39 -0.02 1.44 16 30 H 0.10 3.41 7.49 -2.91 -0.02 3.39 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.10 1.61 6.49 -2.39 -0.02 1.59 16 33 H 0.07 1.42 6.64 -2.38 -0.02 1.40 16 34 H 0.43 13.64 6.89 -92.71 -0.64 13.00 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.23 5.94 8.06 -2.91 -0.02 5.92 16 41 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.04 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -77.49 376.39 5.85 -71.64 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.40 Total: 21.63 kcal Atomic # 6 Polarization: 22.18 SS G_CDS: 6.79 Total: 28.97 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -3.05 Total: -110.02 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: -0.33 Total: -60.31 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -77.49 5.85 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093256417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.241 kcal (2) G-P(sol) polarization free energy of solvation -77.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds