Wall clock time and date at job start Tue Mar 31 2020 13:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00246 * 2 1 4 4 C 1.38755 * 120.05244 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94149 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05699 * 359.74531 * 5 4 3 7 7 C 1.50700 * 119.94672 * 180.27677 * 6 5 4 8 8 N 1.46898 * 109.46937 * 270.23224 * 7 6 5 9 9 C 1.46899 * 110.99999 * 294.29916 * 8 7 6 10 10 C 1.53246 * 109.33436 * 172.74805 * 9 8 7 11 11 N 1.47080 * 108.52160 * 53.83569 * 10 9 8 12 12 C 1.36932 * 120.88146 * 128.83603 * 11 10 9 13 13 H 1.07999 * 119.99598 * 206.55540 * 12 11 10 14 14 C 1.38805 * 120.00366 * 26.55634 * 12 11 10 15 15 N 1.31621 * 119.99868 * 17.02776 * 14 12 11 16 16 Si 1.86801 * 120.00252 * 197.02738 * 14 12 11 17 17 H 1.48500 * 109.47107 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47016 * 119.99786 * 16 14 12 19 19 H 1.48498 * 109.47332 * 239.99855 * 16 14 12 20 20 C 1.47082 * 118.23618 * 308.80888 * 11 10 9 21 21 C 1.46901 * 110.99400 * 169.99914 * 8 7 6 22 22 C 1.38248 * 120.11062 * 0.51076 * 6 5 4 23 23 C 1.38166 * 120.05460 * 359.49122 * 22 6 5 24 24 N 1.48000 * 120.03122 * 180.23241 * 23 22 6 25 25 O 1.21799 * 120.00002 * 359.97438 * 24 23 22 26 26 O 1.21796 * 120.00351 * 180.02562 * 24 23 22 27 27 H 1.09001 * 109.47026 * 300.00185 * 1 2 3 28 28 H 1.09002 * 109.47032 * 59.99869 * 1 2 3 29 29 H 1.08996 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.03073 * 0.04695 * 4 3 2 31 31 H 1.07998 * 119.97172 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47109 * 30.23808 * 7 6 5 33 33 H 1.09003 * 109.47057 * 150.23172 * 7 6 5 34 34 H 1.09001 * 109.49675 * 292.70615 * 9 8 7 35 35 H 1.09002 * 109.49037 * 52.79296 * 9 8 7 36 36 H 1.08996 * 109.62734 * 294.11830 * 10 9 8 37 37 H 1.09005 * 109.62526 * 173.54231 * 10 9 8 38 38 H 0.97004 * 120.00357 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.63105 * 291.48116 * 20 11 10 40 40 H 1.08999 * 109.78853 * 170.99240 * 20 11 10 41 41 H 1.08994 * 109.49879 * 307.21068 * 21 8 7 42 42 H 1.08998 * 109.49686 * 67.29917 * 21 8 7 43 43 H 1.07996 * 119.97679 * 179.76264 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6757 0.0042 7 6 3.9862 5.0185 0.0100 8 7 4.2087 5.4605 -1.3732 9 6 5.1605 4.5782 -2.0612 10 6 5.2270 4.9611 -3.5435 11 7 5.5276 6.3975 -3.6420 12 6 6.5504 6.8489 -4.4327 13 1 7.0432 7.7808 -4.1982 14 6 6.9538 6.1088 -5.5355 15 7 6.1682 5.1715 -6.0221 16 14 8.6115 6.4430 -6.3291 17 1 9.2980 7.5386 -5.5988 18 1 9.4431 5.2139 -6.2746 19 1 8.4108 6.8425 -7.7452 20 6 4.7001 7.3362 -2.8691 21 6 4.6543 6.8597 -1.4133 22 6 4.0561 2.5170 -0.0005 23 6 3.4312 1.2848 -0.0001 24 7 4.2390 0.0447 0.0000 25 8 5.4552 0.1101 -0.0008 26 8 3.6876 -1.0413 0.0000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2128 2.3204 -0.0002 31 1 1.3341 4.5113 -0.0019 32 1 3.3582 5.7441 0.5268 33 1 4.9441 4.9359 0.5236 34 1 6.1478 4.6878 -1.6125 35 1 4.8306 3.5435 -1.9672 36 1 4.2681 4.7542 -4.0185 37 1 6.0134 4.3879 -4.0348 38 1 6.4502 4.6539 -6.7925 39 1 3.6905 7.3576 -3.2792 40 1 5.1349 8.3347 -2.9140 41 1 3.9574 7.4798 -0.8495 42 1 5.6486 6.9376 -0.9737 43 1 5.1345 2.5751 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103882210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:21 Heat of formation + Delta-G solvation = 26.402283 kcal Electronic energy + Delta-G solvation = -27501.259504 eV Core-core repulsion = 23551.488278 eV Total energy + Delta-G solvation = -3949.771226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10654 -40.52398 -38.87137 -37.51902 -36.30669 -34.57064 -32.39789 -31.87901 -30.53035 -30.00588 -28.21958 -27.08320 -26.35499 -24.67184 -22.95842 -22.58530 -22.47433 -21.33936 -19.29565 -19.08079 -18.54061 -17.98841 -17.44743 -16.87616 -16.59047 -16.15941 -15.35531 -15.16861 -14.93083 -14.63038 -14.52774 -14.17731 -13.60348 -13.44950 -13.30340 -12.97198 -12.94769 -12.55703 -12.08083 -11.91606 -11.64331 -11.61620 -11.38771 -11.36154 -11.09937 -10.94513 -10.92050 -10.77739 -10.49563 -10.36983 -10.10745 -9.87330 -9.78644 -9.62104 -8.77104 -8.53791 -7.96716 -6.70926 -5.80536 -3.22201 -0.09869 0.76386 1.37885 1.49333 2.62234 3.05848 3.36909 3.44784 3.46560 4.08402 4.22079 4.34243 4.48478 4.52772 4.67780 4.71728 4.73376 4.75079 5.09588 5.11094 5.32580 5.35420 5.37288 5.40035 5.52478 5.62002 5.80668 5.84207 6.01790 6.04206 6.10208 6.13918 6.25327 6.39427 6.45904 6.61822 6.73122 6.85413 7.17267 7.43007 7.55909 7.64225 7.78379 7.81490 8.40459 9.18256 9.81670 10.39449 11.28317 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015675 B = 0.003372 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.888108 B = 8302.422666 C = 9143.811681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.285 6.285 3 C 0.190 3.810 4 C -0.214 4.214 5 C -0.005 4.005 6 C -0.102 4.102 7 C 0.093 3.907 8 N -0.529 5.529 9 C 0.030 3.970 10 C 0.180 3.820 11 N -0.595 5.595 12 C -0.254 4.254 13 H 0.067 0.933 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.290 1.290 20 C 0.149 3.851 21 C 0.045 3.955 22 C -0.013 4.013 23 C -0.080 4.080 24 N 0.038 4.962 25 O -0.179 6.179 26 O -0.145 6.145 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.089 0.911 38 H 0.254 0.746 39 H 0.025 0.975 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 -4.833 16.012 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.195 6.195 3 C 0.140 3.860 4 C -0.234 4.234 5 C -0.024 4.024 6 C -0.104 4.104 7 C -0.035 4.035 8 N -0.254 5.254 9 C -0.098 4.098 10 C 0.054 3.946 11 N -0.318 5.318 12 C -0.383 4.383 13 H 0.085 0.915 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.217 1.217 20 C 0.022 3.978 21 C -0.085 4.085 22 C -0.032 4.032 23 C -0.165 4.165 24 N 0.556 4.444 25 O -0.389 6.389 26 O -0.364 6.364 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.859 -4.536 15.598 21.352 hybrid contribution 1.505 -0.097 -0.125 1.513 sum -12.354 -4.633 15.472 20.334 Atomic orbital electron populations 1.23280 0.77352 1.05041 1.01796 1.86403 1.22157 1.24565 1.86385 1.18646 0.89378 0.86408 0.91530 1.21284 1.00842 0.90976 1.10259 1.21275 0.94002 0.97701 0.89402 1.19747 0.93444 0.94716 1.02468 1.21030 0.98718 0.91741 0.92035 1.62053 1.48099 1.03270 1.11938 1.23016 0.92257 0.95186 0.99386 1.20839 1.00139 0.85286 0.88378 1.44129 1.35078 1.00852 1.51764 1.19222 1.07823 1.07271 1.04021 0.91549 1.25029 0.98781 0.99714 0.96115 1.70033 1.34889 1.25449 1.24333 0.86233 0.84026 0.77654 0.78919 1.20284 1.21479 1.21693 1.20963 0.94741 0.93344 0.88726 1.22658 0.97569 0.87930 1.00303 1.20900 1.02137 0.88617 0.91551 1.20443 0.88098 0.85705 1.22206 1.43309 1.01168 1.02366 0.97579 1.94550 0.95593 1.93945 1.54790 1.94554 1.74344 1.14936 1.52581 0.92103 0.91873 0.87247 0.83241 0.83614 0.89691 0.93876 0.95302 0.92300 0.95702 0.89275 0.93608 0.95733 0.92493 0.91846 0.95125 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.28 -3.24 8.51 -41.55 -0.35 -3.59 16 3 C 0.19 2.26 6.67 -39.21 -0.26 2.00 16 4 C -0.21 -1.95 9.04 -39.43 -0.36 -2.30 16 5 C -0.01 -0.05 9.69 -39.60 -0.38 -0.43 16 6 C -0.10 -1.19 4.89 -104.60 -0.51 -1.70 16 7 C 0.09 1.12 5.12 -4.98 -0.03 1.10 16 8 N -0.53 -8.56 4.62 -235.76 -1.09 -9.65 16 9 C 0.03 0.58 5.34 -3.70 -0.02 0.56 16 10 C 0.18 4.33 5.42 -3.60 -0.02 4.31 16 11 N -0.59 -14.87 3.04 -172.01 -0.52 -15.39 16 12 C -0.25 -6.95 9.63 -15.06 -0.15 -7.09 16 13 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 14 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 15 N -0.90 -26.35 11.15 55.49 0.62 -25.73 16 16 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 C 0.15 3.04 6.69 -3.60 -0.02 3.02 16 21 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 22 C -0.01 -0.16 7.36 -39.60 -0.29 -0.46 16 23 C -0.08 -1.13 6.87 -79.81 -0.55 -1.67 16 24 N 0.04 0.63 4.45 34.03 0.15 0.78 16 25 O -0.18 -3.09 18.45 -29.46 -0.54 -3.64 16 26 O -0.14 -2.44 17.24 -36.49 -0.63 -3.07 16 27 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 28 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 29 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.15 0.87 6.30 -52.49 -0.33 0.54 16 31 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 33 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 1.06 5.65 -51.93 -0.29 0.77 16 36 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 2.41 6.12 -51.93 -0.32 2.10 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 41 H 0.06 0.85 7.99 -51.93 -0.41 0.43 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.16 2.06 7.48 -52.49 -0.39 1.67 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -32.87 353.22 -9.65 -42.52 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.87 Total: -3.39 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.70 Total: -0.88 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.84 Total: -49.99 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.53 Total: -10.30 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.87 -9.65 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.919 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds