Wall clock time and date at job start Tue Mar 31 2020 13:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00246 * 2 1 4 4 C 1.38755 * 120.05244 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94149 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05699 * 359.74531 * 5 4 3 7 7 C 1.50700 * 119.94672 * 180.27677 * 6 5 4 8 8 N 1.46898 * 109.46937 * 270.23224 * 7 6 5 9 9 C 1.46899 * 110.99999 * 294.29916 * 8 7 6 10 10 C 1.53246 * 109.33436 * 172.74805 * 9 8 7 11 11 N 1.47080 * 108.52160 * 53.83569 * 10 9 8 12 12 C 1.36932 * 120.88146 * 128.83603 * 11 10 9 13 13 H 1.07999 * 119.99598 * 206.55540 * 12 11 10 14 14 C 1.38805 * 120.00366 * 26.55634 * 12 11 10 15 15 N 1.31621 * 119.99868 * 17.02776 * 14 12 11 16 16 Si 1.86801 * 120.00252 * 197.02738 * 14 12 11 17 17 H 1.48500 * 109.47107 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47016 * 119.99786 * 16 14 12 19 19 H 1.48498 * 109.47332 * 239.99855 * 16 14 12 20 20 C 1.47082 * 118.23618 * 308.80888 * 11 10 9 21 21 C 1.46901 * 110.99400 * 169.99914 * 8 7 6 22 22 C 1.38248 * 120.11062 * 0.51076 * 6 5 4 23 23 C 1.38166 * 120.05460 * 359.49122 * 22 6 5 24 24 N 1.48000 * 120.03122 * 180.23241 * 23 22 6 25 25 O 1.21799 * 120.00002 * 359.97438 * 24 23 22 26 26 O 1.21796 * 120.00351 * 180.02562 * 24 23 22 27 27 H 1.09001 * 109.47026 * 300.00185 * 1 2 3 28 28 H 1.09002 * 109.47032 * 59.99869 * 1 2 3 29 29 H 1.08996 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.03073 * 0.04695 * 4 3 2 31 31 H 1.07998 * 119.97172 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47109 * 30.23808 * 7 6 5 33 33 H 1.09003 * 109.47057 * 150.23172 * 7 6 5 34 34 H 1.09001 * 109.49675 * 292.70615 * 9 8 7 35 35 H 1.09002 * 109.49037 * 52.79296 * 9 8 7 36 36 H 1.08996 * 109.62734 * 294.11830 * 10 9 8 37 37 H 1.09005 * 109.62526 * 173.54231 * 10 9 8 38 38 H 0.97004 * 120.00357 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.63105 * 291.48116 * 20 11 10 40 40 H 1.08999 * 109.78853 * 170.99240 * 20 11 10 41 41 H 1.08994 * 109.49879 * 307.21068 * 21 8 7 42 42 H 1.08998 * 109.49686 * 67.29917 * 21 8 7 43 43 H 1.07996 * 119.97679 * 179.76264 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6757 0.0042 7 6 3.9862 5.0185 0.0100 8 7 4.2087 5.4605 -1.3732 9 6 5.1605 4.5782 -2.0612 10 6 5.2270 4.9611 -3.5435 11 7 5.5276 6.3975 -3.6420 12 6 6.5504 6.8489 -4.4327 13 1 7.0432 7.7808 -4.1982 14 6 6.9538 6.1088 -5.5355 15 7 6.1682 5.1715 -6.0221 16 14 8.6115 6.4430 -6.3291 17 1 9.2980 7.5386 -5.5988 18 1 9.4431 5.2139 -6.2746 19 1 8.4108 6.8425 -7.7452 20 6 4.7001 7.3362 -2.8691 21 6 4.6543 6.8597 -1.4133 22 6 4.0561 2.5170 -0.0005 23 6 3.4312 1.2848 -0.0001 24 7 4.2390 0.0447 0.0000 25 8 5.4552 0.1101 -0.0008 26 8 3.6876 -1.0413 0.0000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2128 2.3204 -0.0002 31 1 1.3341 4.5113 -0.0019 32 1 3.3582 5.7441 0.5268 33 1 4.9441 4.9359 0.5236 34 1 6.1478 4.6878 -1.6125 35 1 4.8306 3.5435 -1.9672 36 1 4.2681 4.7542 -4.0185 37 1 6.0134 4.3879 -4.0348 38 1 6.4502 4.6539 -6.7925 39 1 3.6905 7.3576 -3.2792 40 1 5.1349 8.3347 -2.9140 41 1 3.9574 7.4798 -0.8495 42 1 5.6486 6.9376 -0.9737 43 1 5.1345 2.5751 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103882210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:20 Heat of formation + Delta-G solvation = 5.687947 kcal Electronic energy + Delta-G solvation = -27502.157745 eV Core-core repulsion = 23551.488278 eV Total energy + Delta-G solvation = -3950.669467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.24900 -41.42292 -40.00126 -38.72139 -37.54151 -36.19363 -33.70274 -33.10051 -31.87718 -31.62662 -29.10923 -28.29357 -27.50529 -26.09742 -24.37233 -24.14432 -23.57320 -22.39990 -20.86482 -20.14881 -19.73996 -18.85975 -18.73349 -18.61824 -17.46577 -17.07423 -16.84766 -16.31468 -16.14493 -15.76168 -15.73064 -15.36844 -15.07539 -15.01768 -14.88949 -14.29783 -13.88536 -13.43597 -13.20901 -13.14293 -13.00288 -12.75611 -12.66774 -12.65422 -12.55388 -12.30205 -12.26659 -12.19344 -12.03657 -12.00308 -11.87053 -11.59483 -11.45894 -10.64802 -10.61718 -9.65288 -9.28737 -8.70415 -7.90146 -5.34490 -1.17198 -0.08095 0.30821 0.43180 1.43735 1.46131 1.56082 1.91720 2.18223 2.48794 3.07829 3.25445 3.29300 3.49216 3.65920 3.66927 3.79188 3.90158 4.23458 4.27456 4.30121 4.34421 4.36769 4.44047 4.46636 4.60796 4.66916 4.68974 4.71985 4.77420 4.86393 4.90257 5.01623 5.14180 5.19397 5.26074 5.34334 5.36829 5.59468 5.63777 5.98684 6.10595 6.21216 6.34986 6.54003 7.10857 7.82642 8.35659 9.16670 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015675 B = 0.003372 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.888108 B = 8302.422666 C = 9143.811681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.310 6.310 3 C 0.188 3.812 4 C -0.201 4.201 5 C 0.011 3.989 6 C -0.110 4.110 7 C 0.096 3.904 8 N -0.532 5.532 9 C 0.051 3.949 10 C 0.188 3.812 11 N -0.615 5.615 12 C -0.261 4.261 13 H 0.071 0.929 14 C -0.053 4.053 15 N -0.937 5.937 16 Si 0.966 3.034 17 H -0.264 1.264 18 H -0.293 1.293 19 H -0.291 1.291 20 C 0.142 3.858 21 C 0.055 3.945 22 C -0.026 4.026 23 C -0.108 4.108 24 N 0.040 4.960 25 O -0.220 6.220 26 O -0.157 6.157 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.191 0.809 31 H 0.184 0.816 32 H 0.125 0.875 33 H 0.044 0.956 34 H 0.019 0.981 35 H 0.065 0.935 36 H -0.004 1.004 37 H 0.049 0.951 38 H 0.249 0.751 39 H 0.019 0.981 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.025 0.975 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.762 -2.946 18.010 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.221 6.221 3 C 0.139 3.861 4 C -0.219 4.219 5 C -0.007 4.007 6 C -0.112 4.112 7 C -0.031 4.031 8 N -0.257 5.257 9 C -0.078 4.078 10 C 0.062 3.938 11 N -0.339 5.339 12 C -0.391 4.391 13 H 0.088 0.912 14 C -0.248 4.248 15 N -0.584 5.584 16 Si 0.794 3.206 17 H -0.188 1.188 18 H -0.220 1.220 19 H -0.218 1.218 20 C 0.017 3.983 21 C -0.073 4.073 22 C -0.046 4.046 23 C -0.194 4.194 24 N 0.551 4.449 25 O -0.422 6.422 26 O -0.377 6.377 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.140 0.860 30 H 0.208 0.792 31 H 0.201 0.799 32 H 0.143 0.857 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.014 0.986 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.128 0.872 42 H 0.043 0.957 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.397 -2.638 17.637 24.225 hybrid contribution 2.078 -0.650 -0.708 2.289 sum -14.319 -3.287 16.929 22.415 Atomic orbital electron populations 1.23677 0.74600 1.06704 1.03624 1.86387 1.25056 1.24736 1.85890 1.18930 0.88681 0.87786 0.90746 1.21741 1.02570 0.89496 1.08124 1.21737 0.93092 0.99283 0.86621 1.19817 0.94530 0.93693 1.03158 1.21144 0.99761 0.92789 0.89375 1.61958 1.46401 1.02673 1.14703 1.22563 0.92879 0.96224 0.96174 1.20533 0.96984 0.84969 0.91313 1.44415 1.35600 1.01818 1.52067 1.19582 1.08467 1.07153 1.03933 0.91182 1.25790 1.01927 1.00003 0.97094 1.70195 1.36553 1.26739 1.24871 0.85231 0.80091 0.77466 0.77830 1.18818 1.22004 1.21808 1.21176 0.93497 0.92948 0.90705 1.22525 0.98789 0.88534 0.97497 1.20896 1.01823 0.89152 0.92684 1.20693 0.89039 0.84500 1.25138 1.43701 1.01171 1.03200 0.96857 1.94526 0.96701 1.94294 1.56707 1.94507 1.74173 1.16211 1.52794 0.89640 0.90450 0.85978 0.79175 0.79909 0.85730 0.93767 0.96267 0.91656 0.98603 0.93268 0.94223 0.96299 0.91964 0.87214 0.95654 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.31 -6.55 8.51 -71.28 -0.61 -7.16 16 3 C 0.19 4.13 6.67 22.51 0.15 4.28 16 4 C -0.20 -2.76 9.04 22.37 0.20 -2.56 16 5 C 0.01 0.16 9.69 22.25 0.22 0.37 16 6 C -0.11 -2.25 4.89 -19.85 -0.10 -2.35 16 7 C 0.10 1.96 5.12 85.56 0.44 2.40 16 8 N -0.53 -15.86 4.62 -899.80 -4.16 -20.01 16 9 C 0.05 1.96 5.34 86.39 0.46 2.42 16 10 C 0.19 9.40 5.42 86.35 0.47 9.86 16 11 N -0.61 -31.10 3.04 -698.11 -2.12 -33.22 16 12 C -0.26 -14.49 9.63 84.03 0.81 -13.68 16 13 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 14 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16 15 N -0.94 -56.89 11.15 21.65 0.24 -56.65 16 16 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 C 0.14 5.60 6.69 86.35 0.58 6.18 16 21 C 0.06 1.63 5.62 86.39 0.49 2.12 16 22 C -0.03 -0.67 7.36 22.25 0.16 -0.50 16 23 C -0.11 -3.06 6.87 36.48 0.25 -2.81 16 24 N 0.04 1.39 4.45 -46.25 -0.21 1.19 16 25 O -0.22 -8.22 18.45 18.89 0.35 -7.87 16 26 O -0.16 -5.54 17.24 25.61 0.44 -5.10 16 27 H 0.09 0.36 7.66 -2.39 -0.02 0.34 16 28 H 0.08 0.49 7.66 -2.39 -0.02 0.47 16 29 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.19 1.03 6.30 -2.91 -0.02 1.01 16 31 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.12 1.64 7.91 -2.39 -0.02 1.62 16 33 H 0.04 0.93 8.07 -2.39 -0.02 0.91 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 2.41 5.65 -2.39 -0.01 2.39 16 36 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.05 2.82 6.12 -2.38 -0.01 2.80 16 38 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 2.34 7.96 -2.39 -0.02 2.32 16 41 H 0.11 2.31 7.99 -2.39 -0.02 2.29 16 42 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.14 3.95 7.48 -2.91 -0.02 3.93 16 Total: -1.00 -76.99 353.22 2.65 -74.34 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.03 Total: 2.46 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.66 Total: 4.31 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -6.24 Total: -108.69 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.13 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -76.99 2.65 -74.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.028 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds