Wall clock time and date at job start Tue Mar 31 2020 13:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46496 * 119.99773 * 2 1 4 4 C 1.50700 * 109.47319 * 270.00107 * 3 2 1 5 5 H 1.07993 * 120.00415 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99956 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99795 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00052 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47153 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46993 * 120.00077 * 8 6 4 11 11 H 1.48496 * 109.47030 * 240.00152 * 8 6 4 12 12 C 1.34769 * 119.99890 * 180.02562 * 2 1 3 13 13 O 1.21286 * 120.00126 * 179.97438 * 12 2 1 14 14 C 1.50706 * 120.00156 * 359.97438 * 12 2 1 15 15 O 1.42901 * 109.47079 * 180.02562 * 14 12 2 16 16 C 1.42902 * 114.00068 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47233 * 180.02562 * 16 15 14 18 18 O 1.21285 * 119.99771 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00157 * 179.97438 * 17 16 15 20 20 C 1.46503 * 120.00355 * 180.02562 * 19 17 16 21 21 C 1.50695 * 109.47313 * 180.02562 * 20 19 17 22 22 C 1.38678 * 120.41675 * 270.25293 * 21 20 19 23 23 C 1.38627 * 118.41930 * 180.24221 * 22 21 20 24 24 C 1.38232 * 119.16085 * 359.75178 * 23 22 21 25 25 N 1.31857 * 120.76541 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.72235 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.46660 * 269.99613 * 1 2 3 28 28 H 1.08997 * 109.46937 * 29.99617 * 1 2 3 29 29 H 1.08996 * 109.47047 * 149.99896 * 1 2 3 30 30 H 1.08996 * 109.47207 * 30.00803 * 3 2 1 31 31 H 1.09007 * 109.46604 * 150.00300 * 3 2 1 32 32 H 0.97001 * 120.00114 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46677 * 60.00573 * 14 12 2 34 34 H 1.08994 * 109.47235 * 300.00505 * 14 12 2 35 35 H 1.08999 * 109.46793 * 60.00064 * 16 15 14 36 36 H 1.09000 * 109.47054 * 300.00543 * 16 15 14 37 37 H 0.97000 * 119.99935 * 359.97438 * 19 17 16 38 38 H 1.09001 * 109.46632 * 59.99997 * 20 19 17 39 39 H 1.08996 * 109.46728 * 299.99991 * 20 19 17 40 40 H 1.07994 * 120.78944 * 359.96926 * 22 21 20 41 41 H 1.07997 * 120.42083 * 179.72800 * 23 22 21 42 42 H 1.07999 * 119.61954 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.61237 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6730 8 14 3.4367 3.4178 -3.4338 9 1 2.8588 2.4179 -4.3672 10 1 2.7985 4.7384 -3.6667 11 1 4.8991 3.5266 -3.6675 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 8 2.3140 -3.5584 -0.0005 16 6 1.6995 -4.8486 -0.0011 17 6 2.7662 -5.9131 -0.0004 18 8 3.9374 -5.5980 0.0010 19 7 2.4187 -7.2153 -0.0003 20 6 3.4556 -8.2502 0.0010 21 6 2.8076 -9.6107 0.0002 22 6 2.4995 -10.2423 1.1958 23 6 1.9086 -11.4953 1.1468 24 6 1.6432 -12.0673 -0.0833 25 7 1.9450 -11.4350 -1.2004 26 6 2.5076 -10.2421 -1.1917 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1383 0.5138 32 1 4.0294 4.4445 -0.8502 33 1 0.7585 -2.5298 -0.8903 34 1 0.7590 -2.5302 0.8896 35 1 1.0797 -4.9553 -0.8913 36 1 1.0790 -4.9559 0.8886 37 1 1.4820 -7.4673 -0.0003 38 1 4.0750 -8.1428 0.8915 39 1 4.0765 -8.1434 -0.8885 40 1 2.7187 -9.7711 2.1424 41 1 1.6590 -12.0182 2.0582 42 1 1.1827 -13.0430 -0.1301 43 1 2.7407 -9.7552 -2.1271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104045096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:42 Heat of formation + Delta-G solvation = -67.632568 kcal Electronic energy + Delta-G solvation = -25289.935470 eV Core-core repulsion = 21336.086587 eV Total energy + Delta-G solvation = -3953.848883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84389 -39.83562 -39.00490 -37.13532 -35.52951 -34.74343 -32.97956 -32.60648 -32.08680 -29.70133 -28.30619 -26.98024 -25.97277 -25.35312 -24.12854 -22.60148 -22.48486 -20.96379 -18.79200 -17.88006 -17.36984 -17.13471 -17.01911 -16.66922 -16.35102 -16.17812 -15.73312 -15.27542 -15.14604 -14.95935 -14.41731 -14.21448 -14.14703 -13.89268 -13.65583 -13.54872 -13.18524 -12.75525 -12.54939 -12.19648 -12.11565 -12.00129 -11.80851 -11.72865 -11.18857 -10.84943 -10.57666 -10.49616 -10.13519 -10.09460 -9.98590 -9.81384 -9.58279 -9.56451 -9.44539 -8.84216 -8.41360 -7.64758 -6.01968 -4.06596 0.43379 0.69608 2.42692 2.52296 3.25076 3.32241 3.37853 3.41030 3.45717 3.58086 3.85156 4.13095 4.26187 4.31867 4.39778 4.44473 4.47788 4.57836 4.84872 4.85630 4.95021 5.06092 5.11976 5.19957 5.23293 5.31593 5.33002 5.34852 5.52697 5.61926 5.68507 5.88595 5.98237 6.10737 6.16508 6.77876 7.07226 7.19262 7.40703 7.46271 7.54981 7.94645 7.99625 8.25141 8.38810 8.92830 9.10788 9.58427 11.06217 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.001816 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.340125 B =15412.743217 C =15743.231705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.603 5.603 3 C 0.246 3.754 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.503 3.497 13 O -0.514 6.514 14 C 0.044 3.956 15 O -0.336 6.336 16 C 0.043 3.957 17 C 0.513 3.487 18 O -0.502 6.502 19 N -0.732 5.732 20 C 0.167 3.833 21 C -0.160 4.160 22 C -0.056 4.056 23 C -0.174 4.174 24 C 0.104 3.896 25 N -0.486 5.486 26 C 0.119 3.881 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.400 0.600 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 -29.955 4.744 32.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C 0.127 3.873 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.288 3.712 13 O -0.388 6.388 14 C -0.036 4.036 15 O -0.253 6.253 16 C -0.038 4.038 17 C 0.298 3.702 18 O -0.374 6.374 19 N -0.388 5.388 20 C 0.044 3.956 21 C -0.162 4.162 22 C -0.082 4.082 23 C -0.194 4.194 24 C -0.053 4.053 25 N -0.194 5.194 26 C -0.039 4.039 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.772 -29.874 3.985 31.683 hybrid contribution -0.585 0.537 -0.103 0.801 sum -10.357 -29.337 3.881 31.353 Atomic orbital electron populations 1.21664 0.81457 1.02634 1.00458 1.48106 1.06123 1.07396 1.72133 1.19321 0.92654 0.77680 0.97620 1.21479 1.36539 1.06233 0.92315 0.92360 1.24946 0.95317 0.96412 0.97501 1.69942 1.38417 1.14317 1.30670 0.86425 0.78146 0.78203 0.84537 1.19806 1.20998 1.20830 1.19833 0.88260 0.84369 0.78742 1.90737 1.13534 1.86654 1.47906 1.22448 0.92155 0.87209 1.01768 1.88182 1.30606 1.11159 1.95333 1.22177 0.94163 0.84834 1.02591 1.20333 0.90412 0.82779 0.76643 1.90815 1.19190 1.81422 1.46022 1.45907 1.10075 1.05024 1.77807 1.20076 0.89723 0.81836 1.04003 1.20927 1.02678 0.97897 0.94701 1.21621 0.94014 0.94253 0.98359 1.22211 1.00883 0.96446 0.99882 1.22901 0.95169 0.99450 0.87781 1.67783 1.11290 1.08855 1.31467 1.22828 0.92791 0.90567 0.97681 0.93618 0.90496 0.92705 0.94767 0.93703 0.92760 0.90583 0.90761 0.90123 0.90218 0.76554 0.90121 0.89938 0.84436 0.84442 0.82550 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.24 59.85 0.61 1.85 16 2 N -0.60 -12.95 2.86 -182.95 -0.52 -13.48 16 3 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 4 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 8 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.50 11.06 7.75 -10.99 -0.09 10.98 16 13 O -0.51 -14.28 16.08 -14.36 -0.23 -14.51 16 14 C 0.04 0.67 4.97 36.01 0.18 0.85 16 15 O -0.34 -5.76 9.41 -64.74 -0.61 -6.37 16 16 C 0.04 0.45 6.42 36.01 0.23 0.69 16 17 C 0.51 6.23 7.91 -10.99 -0.09 6.14 16 18 O -0.50 -9.04 16.50 -14.36 -0.24 -9.27 16 19 N -0.73 -5.53 5.55 -61.47 -0.34 -5.87 16 20 C 0.17 1.21 5.82 -5.19 -0.03 1.18 16 21 C -0.16 -0.95 5.27 -104.48 -0.55 -1.50 16 22 C -0.06 -0.28 9.86 -39.28 -0.39 -0.67 16 23 C -0.17 -0.77 10.11 -39.44 -0.40 -1.17 16 24 C 0.10 0.58 11.18 -17.54 -0.20 0.39 16 25 N -0.49 -3.80 10.36 -13.25 -0.14 -3.94 16 26 C 0.12 0.80 10.86 -17.55 -0.19 0.61 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 30 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.04 1.36 7.42 -51.92 -0.39 0.97 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 0.93 7.40 -51.93 -0.38 0.55 16 34 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.40 1.85 8.46 -40.82 -0.35 1.51 16 38 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 42 H 0.16 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -41.21 378.24 -8.07 -49.27 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -6.05 Total: -4.51 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -1.35 Total: 11.98 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.26 Total: -49.56 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.08 Total: -30.15 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -41.21 -8.07 -49.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104045096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.359 kcal (2) G-P(sol) polarization free energy of solvation -41.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds