Wall clock time and date at job start Tue Mar 31 2020 13:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46496 * 119.99773 * 2 1 4 4 C 1.50700 * 109.47319 * 270.00107 * 3 2 1 5 5 H 1.07993 * 120.00415 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99956 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99795 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00052 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47153 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46993 * 120.00077 * 8 6 4 11 11 H 1.48496 * 109.47030 * 240.00152 * 8 6 4 12 12 C 1.34769 * 119.99890 * 180.02562 * 2 1 3 13 13 O 1.21286 * 120.00126 * 179.97438 * 12 2 1 14 14 C 1.50706 * 120.00156 * 359.97438 * 12 2 1 15 15 O 1.42901 * 109.47079 * 180.02562 * 14 12 2 16 16 C 1.42902 * 114.00068 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47233 * 180.02562 * 16 15 14 18 18 O 1.21285 * 119.99771 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00157 * 179.97438 * 17 16 15 20 20 C 1.46503 * 120.00355 * 180.02562 * 19 17 16 21 21 C 1.50695 * 109.47313 * 180.02562 * 20 19 17 22 22 C 1.38678 * 120.41675 * 270.25293 * 21 20 19 23 23 C 1.38627 * 118.41930 * 180.24221 * 22 21 20 24 24 C 1.38232 * 119.16085 * 359.75178 * 23 22 21 25 25 N 1.31857 * 120.76541 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.72235 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.46660 * 269.99613 * 1 2 3 28 28 H 1.08997 * 109.46937 * 29.99617 * 1 2 3 29 29 H 1.08996 * 109.47047 * 149.99896 * 1 2 3 30 30 H 1.08996 * 109.47207 * 30.00803 * 3 2 1 31 31 H 1.09007 * 109.46604 * 150.00300 * 3 2 1 32 32 H 0.97001 * 120.00114 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46677 * 60.00573 * 14 12 2 34 34 H 1.08994 * 109.47235 * 300.00505 * 14 12 2 35 35 H 1.08999 * 109.46793 * 60.00064 * 16 15 14 36 36 H 1.09000 * 109.47054 * 300.00543 * 16 15 14 37 37 H 0.97000 * 119.99935 * 359.97438 * 19 17 16 38 38 H 1.09001 * 109.46632 * 59.99997 * 20 19 17 39 39 H 1.08996 * 109.46728 * 299.99991 * 20 19 17 40 40 H 1.07994 * 120.78944 * 359.96926 * 22 21 20 41 41 H 1.07997 * 120.42083 * 179.72800 * 23 22 21 42 42 H 1.07999 * 119.61954 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.61237 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6730 8 14 3.4367 3.4178 -3.4338 9 1 2.8588 2.4179 -4.3672 10 1 2.7985 4.7384 -3.6667 11 1 4.8991 3.5266 -3.6675 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 8 2.3140 -3.5584 -0.0005 16 6 1.6995 -4.8486 -0.0011 17 6 2.7662 -5.9131 -0.0004 18 8 3.9374 -5.5980 0.0010 19 7 2.4187 -7.2153 -0.0003 20 6 3.4556 -8.2502 0.0010 21 6 2.8076 -9.6107 0.0002 22 6 2.4995 -10.2423 1.1958 23 6 1.9086 -11.4953 1.1468 24 6 1.6432 -12.0673 -0.0833 25 7 1.9450 -11.4350 -1.2004 26 6 2.5076 -10.2421 -1.1917 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1383 0.5138 32 1 4.0294 4.4445 -0.8502 33 1 0.7585 -2.5298 -0.8903 34 1 0.7590 -2.5302 0.8896 35 1 1.0797 -4.9553 -0.8913 36 1 1.0790 -4.9559 0.8886 37 1 1.4820 -7.4673 -0.0003 38 1 4.0750 -8.1428 0.8915 39 1 4.0765 -8.1434 -0.8885 40 1 2.7187 -9.7711 2.1424 41 1 1.6590 -12.0182 2.0582 42 1 1.1827 -13.0430 -0.1301 43 1 2.7407 -9.7552 -2.1271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104045096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:42 Heat of formation + Delta-G solvation = -99.505383 kcal Electronic energy + Delta-G solvation = -25291.317579 eV Core-core repulsion = 21336.086587 eV Total energy + Delta-G solvation = -3955.230992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36921 -40.84417 -40.42913 -38.30956 -36.55926 -36.30413 -34.74394 -33.50667 -32.59206 -30.99472 -29.68126 -28.19577 -27.18050 -26.53169 -24.54349 -24.51738 -23.00093 -21.81406 -20.31653 -18.76166 -18.65627 -18.21143 -17.98884 -17.63117 -17.35866 -17.26280 -17.12247 -16.53673 -16.33914 -15.96034 -15.75348 -15.35844 -15.05756 -14.68968 -14.38952 -14.29341 -14.11965 -13.95685 -13.89358 -13.70418 -13.45872 -13.18259 -13.04582 -12.97587 -12.76487 -12.54612 -12.52715 -12.21672 -11.68775 -11.14804 -10.78770 -10.76474 -10.65834 -10.57561 -10.47169 -10.19741 -10.04812 -9.43597 -8.23415 -6.38252 0.00536 0.29578 1.35074 1.38769 1.49898 1.54208 1.66130 1.79702 2.28093 2.40548 2.85143 3.06116 3.22472 3.42270 3.66346 3.71036 3.85545 3.86216 4.00623 4.06782 4.14114 4.24944 4.26182 4.38146 4.47957 4.50667 4.59952 4.72024 4.77124 4.84583 4.97184 5.01911 5.15713 5.22152 5.26211 5.27832 5.54855 5.72265 5.79675 5.97142 6.05167 6.48836 6.69872 6.76990 6.98406 7.19873 7.27610 7.48104 8.83986 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.001816 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.340125 B =15412.743217 C =15743.231705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.608 5.608 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.266 1.266 11 H -0.284 1.284 12 C 0.486 3.514 13 O -0.593 6.593 14 C 0.061 3.939 15 O -0.391 6.391 16 C 0.039 3.961 17 C 0.509 3.491 18 O -0.576 6.576 19 N -0.707 5.707 20 C 0.169 3.831 21 C -0.158 4.158 22 C -0.058 4.058 23 C -0.168 4.168 24 C 0.094 3.906 25 N -0.516 5.516 26 C 0.107 3.893 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.030 0.970 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.419 0.581 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.153 0.847 41 H 0.166 0.834 42 H 0.178 0.822 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.877 -31.966 4.511 35.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.341 5.341 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.073 0.927 6 C -0.194 4.194 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.190 1.190 11 H -0.210 1.210 12 C 0.274 3.726 13 O -0.473 6.473 14 C -0.018 4.018 15 O -0.310 6.310 16 C -0.040 4.040 17 C 0.296 3.704 18 O -0.454 6.454 19 N -0.362 5.362 20 C 0.045 3.955 21 C -0.160 4.160 22 C -0.084 4.084 23 C -0.187 4.187 24 C -0.062 4.062 25 N -0.225 5.225 26 C -0.050 4.050 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.048 0.952 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.256 0.744 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.171 0.829 41 H 0.183 0.817 42 H 0.195 0.805 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.335 -31.941 3.757 34.816 hybrid contribution 0.428 1.042 0.047 1.128 sum -12.907 -30.899 3.804 33.701 Atomic orbital electron populations 1.22052 0.77099 1.04528 1.03079 1.48131 1.08775 1.05738 1.71432 1.18779 0.91141 0.80359 0.96086 1.21763 1.36902 1.06485 0.93101 0.92719 1.25904 0.94874 0.96500 1.02146 1.70060 1.38955 1.14812 1.33017 0.85336 0.77781 0.78506 0.78982 1.19029 1.19043 1.21047 1.21240 0.87922 0.86707 0.76723 1.90693 1.17227 1.87999 1.51391 1.22394 0.90767 0.82889 1.05760 1.88113 1.33233 1.13655 1.95953 1.22544 0.93667 0.81378 1.06427 1.20866 0.89884 0.84244 0.75450 1.90792 1.22082 1.82643 1.49852 1.45721 1.11183 1.03767 1.75576 1.20018 0.89717 0.82543 1.03196 1.20715 1.03163 0.97083 0.95087 1.21871 0.93498 0.94562 0.98502 1.22501 0.99647 0.96041 1.00518 1.23353 0.94878 1.00226 0.87758 1.67782 1.12389 1.09420 1.32883 1.22907 0.93230 0.90713 0.98170 0.90544 0.91388 0.88067 0.95182 0.98920 0.92392 0.86607 0.85959 0.86255 0.85839 0.74395 0.90746 0.91107 0.82900 0.81688 0.80500 0.82236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.99 10.24 127.77 1.31 3.30 16 2 N -0.61 -25.98 2.86 -851.13 -2.43 -28.42 16 3 C 0.26 14.34 5.16 85.63 0.44 14.78 16 4 C -0.54 -32.30 9.39 25.60 0.24 -32.06 16 5 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 6 C 0.00 0.27 5.46 84.66 0.46 0.73 16 7 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 8 Si 0.97 46.18 29.54 68.60 2.03 48.20 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 12 C 0.49 21.40 7.75 87.66 0.68 22.08 16 13 O -0.59 -34.79 16.08 15.99 0.26 -34.54 16 14 C 0.06 1.64 4.97 71.24 0.35 1.99 16 15 O -0.39 -12.81 9.41 -120.76 -1.14 -13.94 16 16 C 0.04 0.69 6.42 71.24 0.46 1.15 16 17 C 0.51 11.89 7.91 87.66 0.69 12.58 16 18 O -0.58 -21.57 16.50 15.99 0.26 -21.30 16 19 N -0.71 -9.58 5.55 -466.79 -2.59 -12.17 16 20 C 0.17 2.40 5.82 85.63 0.50 2.90 16 21 C -0.16 -1.71 5.27 -19.77 -0.10 -1.81 16 22 C -0.06 -0.45 9.86 22.47 0.22 -0.23 16 23 C -0.17 -1.03 10.11 22.36 0.23 -0.81 16 24 C 0.09 0.88 11.18 84.69 0.95 1.83 16 25 N -0.52 -7.57 10.36 -195.83 -2.03 -9.60 16 26 C 0.11 1.38 10.86 84.67 0.92 2.30 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.97 8.07 -2.39 -0.02 1.95 16 29 H 0.10 1.80 6.44 -2.39 -0.02 1.78 16 30 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 31 H -0.01 -0.48 7.42 -2.38 -0.02 -0.50 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.12 2.19 7.40 -2.39 -0.02 2.18 16 34 H 0.12 2.12 8.11 -2.39 -0.02 2.10 16 35 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.42 2.65 8.46 -92.71 -0.78 1.86 16 38 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 39 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 40 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.17 0.07 8.06 -2.91 -0.02 0.05 16 42 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 43 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -99.84 378.24 2.23 -97.60 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 0.24 Total: 2.79 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 7.35 Total: 28.73 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -6.77 Total: -107.54 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -0.62 Total: -69.78 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -99.84 2.23 -97.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104045096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.902 kcal (2) G-P(sol) polarization free energy of solvation -99.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds