Wall clock time and date at job start Tue Mar 31 2020 12:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47226 * 2 1 4 4 C 1.35899 * 117.00071 * 179.97438 * 3 2 1 5 5 C 1.38610 * 120.01582 * 359.97438 * 4 3 2 6 6 C 1.38792 * 119.86981 * 180.02562 * 5 4 3 7 7 N 1.39665 * 120.04930 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00104 * 180.02562 * 7 6 5 9 9 C 1.53241 * 109.33538 * 187.25129 * 8 7 6 10 10 N 1.47082 * 108.52509 * 306.16899 * 9 8 7 11 11 C 1.36935 * 120.87800 * 231.18634 * 10 9 8 12 12 H 1.07994 * 120.00243 * 27.12925 * 11 10 9 13 13 C 1.38815 * 119.99552 * 206.84012 * 11 10 9 14 14 N 1.31614 * 119.99986 * 17.18837 * 13 11 10 15 15 Si 1.86797 * 120.00057 * 197.17547 * 13 11 10 16 16 H 1.48508 * 109.47149 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47196 * 120.00464 * 15 13 11 18 18 H 1.48497 * 109.47565 * 240.00842 * 15 13 11 19 19 C 1.47072 * 118.23374 * 51.45730 * 10 9 8 20 20 C 1.46908 * 110.99837 * 304.30542 * 7 6 5 21 21 C 1.38979 * 119.90869 * 0.25718 * 6 5 4 22 22 C 1.38115 * 120.03010 * 359.50963 * 21 6 5 23 23 C 1.38215 * 120.13098 * 0.46935 * 22 21 6 24 24 N 1.48007 * 119.95232 * 179.76407 * 23 22 21 25 25 O 1.21798 * 120.00306 * 0.02562 * 24 23 22 26 26 O 1.21805 * 119.99786 * 180.02562 * 24 23 22 27 27 H 1.09005 * 109.47237 * 59.99962 * 1 2 3 28 28 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47167 * 300.00233 * 1 2 3 30 30 H 1.08995 * 109.47075 * 239.99936 * 2 1 3 31 31 H 1.09001 * 109.46544 * 119.99822 * 2 1 3 32 32 H 1.07996 * 120.06507 * 0.04647 * 5 4 3 33 33 H 1.08994 * 109.49506 * 67.29462 * 8 7 6 34 34 H 1.08994 * 109.51398 * 307.22162 * 8 7 6 35 35 H 1.09003 * 109.62622 * 186.45689 * 9 8 7 36 36 H 1.09001 * 109.79122 * 65.97420 * 9 8 7 37 37 H 0.97002 * 120.00194 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.62781 * 68.25550 * 19 10 9 39 39 H 1.09007 * 109.62956 * 188.83247 * 19 10 9 40 40 H 1.09005 * 109.49135 * 292.70520 * 20 7 6 41 41 H 1.09006 * 109.49151 * 52.78280 * 20 7 6 42 42 H 1.07997 * 119.98239 * 179.72314 * 21 6 5 43 43 H 1.08004 * 119.93506 * 180.23267 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1983 0.4263 0.0016 6 6 5.5738 0.6116 0.0027 7 7 6.4283 -0.4931 0.0043 8 6 7.8352 -0.0704 0.0058 9 6 8.7340 -1.2982 -0.1749 10 7 8.3817 -2.2906 0.8519 11 6 9.3453 -2.8525 1.6461 12 1 10.2558 -2.3109 1.8558 13 6 9.1492 -4.1159 2.1867 14 7 8.2258 -4.9095 1.6869 15 14 10.1960 -4.6899 3.6234 16 1 11.1545 -3.6187 3.9966 17 1 9.3202 -4.9960 4.7829 18 1 10.9454 -5.9111 3.2331 19 6 6.9678 -2.6678 0.9988 20 6 6.1380 -1.3816 1.1376 21 6 6.0997 1.8981 0.0081 22 6 5.2544 2.9904 0.0022 23 6 3.8844 2.8075 0.0007 24 7 2.9823 3.9808 -0.0004 25 8 3.4472 5.1066 -0.0004 26 8 1.7748 3.8206 -0.0013 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.7869 -0.5723 0.0012 33 1 8.0682 0.4145 0.9537 34 1 8.0060 0.6291 -0.8124 35 1 9.7783 -1.0076 -0.0602 36 1 8.5798 -1.7259 -1.1656 37 1 8.0885 -5.7922 2.0649 38 1 6.6437 -3.2234 0.1188 39 1 6.8436 -3.2831 1.8899 40 1 6.3950 -0.8780 2.0697 41 1 5.0774 -1.6332 1.1402 42 1 7.1698 2.0437 0.0135 43 1 5.6648 3.9894 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111045226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:21 Heat of formation + Delta-G solvation = 23.772054 kcal Electronic energy + Delta-G solvation = -27433.298862 eV Core-core repulsion = 23483.413581 eV Total energy + Delta-G solvation = -3949.885281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01774 -40.69040 -39.26927 -37.22952 -36.24232 -34.76835 -32.23761 -31.98580 -30.87197 -30.48913 -29.57082 -27.13864 -25.25371 -24.57899 -23.66174 -23.03555 -21.70341 -21.53888 -19.63984 -19.46003 -18.46345 -17.97116 -17.37800 -16.99577 -16.38436 -16.28321 -16.11607 -14.96787 -14.90578 -14.63263 -14.26557 -13.90404 -13.74104 -13.58613 -13.55780 -13.01200 -12.95810 -12.86401 -12.27285 -12.14678 -11.81436 -11.51573 -11.35495 -11.32889 -11.11131 -10.93305 -10.91048 -10.88948 -10.83582 -10.63961 -10.42520 -10.10284 -9.98538 -9.92619 -8.86369 -8.71930 -8.15737 -6.94474 -5.99809 -3.42522 0.04224 0.93743 1.47152 1.63008 2.66363 3.14879 3.24622 3.33704 3.35055 3.66946 4.24870 4.32158 4.54570 4.64575 4.68180 4.71920 4.85600 4.96587 5.02240 5.13343 5.19023 5.28861 5.37315 5.45719 5.52113 5.53918 5.64525 5.71252 5.74097 5.81811 5.83882 5.89429 6.06576 6.14664 6.29370 6.50908 6.59871 6.80156 6.87879 7.11246 7.15138 7.34208 7.60575 7.90494 8.19756 8.97744 9.60160 10.16668 11.09508 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.003112 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.076536 B = 8993.847759 C = 9963.994422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.283 6.283 4 C 0.225 3.775 5 C -0.250 4.250 6 C 0.220 3.780 7 N -0.477 5.477 8 C 0.032 3.968 9 C 0.145 3.855 10 N -0.595 5.595 11 C -0.258 4.258 12 H 0.070 0.930 13 C 0.004 3.996 14 N -0.902 5.902 15 Si 0.904 3.096 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.289 1.289 19 C 0.175 3.825 20 C 0.036 3.964 21 C -0.214 4.214 22 C 0.008 3.992 23 C -0.124 4.124 24 N 0.048 4.952 25 O -0.198 6.198 26 O -0.154 6.154 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.256 0.744 38 H 0.032 0.968 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.152 0.848 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 9.852 -3.422 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.194 6.194 4 C 0.175 3.825 5 C -0.272 4.272 6 C 0.116 3.884 7 N -0.188 5.188 8 C -0.096 4.096 9 C 0.018 3.982 10 N -0.318 5.318 11 C -0.388 4.388 12 H 0.087 0.913 13 C -0.194 4.194 14 N -0.546 5.546 15 Si 0.734 3.266 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.215 1.215 19 C 0.048 3.952 20 C -0.089 4.089 21 C -0.236 4.236 22 C -0.012 4.012 23 C -0.211 4.211 24 N 0.561 4.439 25 O -0.404 6.404 26 O -0.372 6.372 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.116 0.884 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.169 0.831 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.456 8.901 -3.762 13.520 hybrid contribution 0.487 0.008 1.162 1.260 sum -8.969 8.909 -2.600 12.906 Atomic orbital electron populations 1.21761 0.91952 1.02981 1.03988 1.23040 0.96639 0.80995 1.02215 1.86385 1.16725 1.30231 1.86017 1.18330 0.83940 0.90986 0.89274 1.20808 0.92218 0.98344 1.15848 1.19381 0.92038 0.90618 0.86333 1.58778 1.05028 1.13496 1.41475 1.23027 0.85713 1.00019 1.00825 1.21030 0.95863 0.88399 0.92860 1.44166 1.02911 1.47092 1.37616 1.19230 0.99669 0.97256 1.22602 0.91274 1.25055 0.98852 0.95213 1.00327 1.70008 1.35760 1.08134 1.40739 0.86197 0.79702 0.78461 0.82253 1.20172 1.21433 1.21541 1.21062 0.82048 0.89852 1.02203 1.23316 1.00976 0.96158 0.88420 1.21308 1.01194 0.90402 1.10660 1.20690 0.88970 1.01214 0.90303 1.20286 0.90423 0.82886 1.27498 1.43274 1.01536 1.01919 0.97154 1.94489 1.80390 1.09676 1.55865 1.94552 0.96865 1.92648 1.53138 0.91217 0.90091 0.91209 0.91223 0.91266 0.83045 0.92959 0.90469 0.91598 0.95247 0.93418 0.94982 0.88413 0.93417 0.91032 0.83095 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.42 5.46 37.16 0.20 0.63 16 3 O -0.28 -3.65 8.14 -41.59 -0.34 -3.98 16 4 C 0.23 3.02 6.67 -39.25 -0.26 2.76 16 5 C -0.25 -3.17 8.13 -39.24 -0.32 -3.49 16 6 C 0.22 2.96 5.64 -83.81 -0.47 2.49 16 7 N -0.48 -7.28 4.67 -170.55 -0.80 -8.08 16 8 C 0.03 0.47 4.30 -3.70 -0.02 0.46 16 9 C 0.15 2.69 6.69 -3.60 -0.02 2.67 16 10 N -0.59 -13.53 3.03 -171.73 -0.52 -14.05 16 11 C -0.26 -6.55 9.63 -15.06 -0.15 -6.70 16 12 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 13 C 0.00 0.11 4.93 -17.43 -0.09 0.03 16 14 N -0.90 -24.43 11.16 55.49 0.62 -23.81 16 15 Si 0.90 20.39 29.59 -169.99 -5.03 15.36 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 19 C 0.17 3.72 5.45 -3.37 -0.02 3.70 16 20 C 0.04 0.61 5.44 -3.46 -0.02 0.59 16 21 C -0.21 -2.55 8.82 -39.35 -0.35 -2.89 16 22 C 0.01 0.10 9.54 -39.63 -0.38 -0.28 16 23 C -0.12 -1.75 6.87 -79.76 -0.55 -2.30 16 24 N 0.05 0.76 4.45 34.05 0.15 0.91 16 25 O -0.20 -3.17 18.44 -29.46 -0.54 -3.72 16 26 O -0.15 -2.58 17.23 -36.51 -0.63 -3.21 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 32 H 0.15 1.72 5.38 -52.49 -0.28 1.44 16 33 H 0.05 0.78 7.80 -51.93 -0.41 0.37 16 34 H 0.08 0.95 6.90 -51.93 -0.36 0.59 16 35 H 0.07 1.16 7.95 -51.93 -0.41 0.75 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 2.34 6.12 -51.93 -0.32 2.02 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.03 6.66 -51.93 -0.35 0.69 16 42 H 0.15 1.55 5.80 -52.49 -0.30 1.24 16 43 H 0.16 1.56 7.60 -52.48 -0.40 1.16 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -29.43 350.47 -9.56 -38.99 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.71 Total: -0.62 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.05 Total: -3.07 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.55 Total: -45.02 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.51 Total: -10.91 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.43 -9.56 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111045226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.762 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds