Wall clock time and date at job start Tue Mar 31 2020 12:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46980 * 2 1 4 4 C 1.34779 * 119.99972 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99618 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.46499 * 109.47069 * 180.02562 * 6 4 3 8 8 C 1.34782 * 120.00406 * 180.02562 * 7 6 4 9 9 O 1.21591 * 119.99323 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00403 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99933 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47005 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.97666 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99513 * 12 11 10 27 27 H 1.09001 * 109.47076 * 300.00525 * 1 2 3 28 28 H 1.09000 * 109.46904 * 60.00028 * 1 2 3 29 29 H 1.08997 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47205 * 239.99969 * 2 1 3 31 31 H 1.08995 * 109.47049 * 119.99506 * 2 1 3 32 32 H 0.96998 * 120.00276 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47395 * 60.00084 * 6 4 3 34 34 H 1.09005 * 109.47393 * 299.99572 * 6 4 3 35 35 H 0.97009 * 120.00113 * 0.02562 * 7 6 4 36 36 H 0.97001 * 119.99467 * 359.97438 * 10 8 7 37 37 H 1.08993 * 109.47130 * 59.99768 * 11 10 8 38 38 H 1.09003 * 109.47080 * 299.99631 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 42 42 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8457 3.0483 -0.0001 7 7 5.3107 3.0483 0.0001 8 6 5.9847 4.2155 0.0001 9 8 5.3767 5.2685 -0.0004 10 7 7.3324 4.2155 -0.0003 11 6 8.0649 5.4842 0.0003 12 6 9.5465 5.2089 0.0003 13 6 10.2257 5.0825 1.1987 14 6 11.5853 4.8304 1.2029 15 6 12.2682 4.6972 0.0097 16 6 11.5902 4.8291 -1.1949 17 8 12.2598 4.7048 -2.3693 18 6 13.5999 4.5740 -2.2991 19 1 14.0846 4.4897 -1.3377 20 6 14.3557 4.5477 -3.4612 21 7 15.6633 4.4206 -3.3927 22 14 13.5174 4.6941 -5.1241 23 1 13.4287 6.1254 -5.5095 24 1 14.3059 3.9551 -6.1427 25 1 12.1511 4.1180 -5.0422 26 6 10.2247 5.0833 -1.1958 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.3880 2.1185 -0.0004 33 1 3.4820 3.5627 0.8894 34 1 3.4829 3.5617 -0.8906 35 1 5.7958 2.2082 0.0001 36 1 7.8174 3.3754 -0.0003 37 1 7.8018 6.0552 0.8907 38 1 7.8013 6.0564 -0.8892 39 1 9.6930 5.1811 2.1331 40 1 12.1129 4.7327 2.1403 41 1 13.3291 4.4951 0.0136 42 1 16.1920 4.4018 -4.2057 43 1 9.6940 5.1827 -2.1311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113410926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:49 Heat of formation + Delta-G solvation = -69.339650 kcal Electronic energy + Delta-G solvation = -25251.574827 eV Core-core repulsion = 21297.651919 eV Total energy + Delta-G solvation = -3953.922908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.55774 -39.70538 -39.15922 -37.02597 -35.92408 -34.73291 -34.38415 -32.43312 -31.49855 -30.78312 -29.42611 -27.91489 -25.67966 -24.95690 -23.30977 -21.84031 -21.25078 -20.91832 -20.69524 -18.98310 -17.81651 -17.45773 -16.91309 -16.66157 -16.47111 -15.91692 -15.64726 -15.27305 -14.98564 -14.62114 -14.56311 -14.31792 -14.03507 -13.82065 -13.53202 -13.36297 -13.16102 -13.05516 -12.61946 -12.55642 -12.40005 -12.17761 -12.05165 -11.96783 -11.44929 -10.93001 -10.87847 -10.75102 -10.43540 -10.33488 -10.19463 -9.66457 -9.45728 -9.43353 -8.92209 -8.86696 -8.33393 -7.47199 -6.45470 -4.12737 1.76073 2.09840 2.15708 2.38233 2.98495 3.15144 3.20183 3.24125 3.38305 4.14598 4.20669 4.22267 4.46049 4.51112 4.54145 4.67747 4.79143 4.97618 4.98898 5.04377 5.13771 5.26192 5.35606 5.44161 5.48502 5.66972 5.76656 5.83219 5.86539 6.02146 6.14799 6.16194 6.43211 6.48239 6.68748 6.85106 6.90420 7.01503 7.12859 7.21612 7.50693 7.64102 7.74000 7.95410 7.98421 8.52165 8.89499 9.50645 10.61945 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.002078 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.349516 B =13469.558878 C =14338.338826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.728 5.728 4 C 0.508 3.492 5 O -0.534 6.534 6 C 0.122 3.878 7 N -0.740 5.740 8 C 0.708 3.292 9 O -0.597 6.597 10 N -0.734 5.734 11 C 0.187 3.813 12 C -0.076 4.076 13 C -0.185 4.185 14 C -0.078 4.078 15 C -0.212 4.212 16 C 0.156 3.844 17 O -0.216 6.216 18 C -0.391 4.391 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.878 5.878 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.170 4.170 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.404 0.596 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.408 0.592 36 H 0.401 0.599 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.280 0.720 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.318 -5.457 8.082 29.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.382 5.382 4 C 0.294 3.706 5 O -0.410 6.410 6 C -0.006 4.006 7 N -0.399 5.399 8 C 0.408 3.592 9 O -0.476 6.476 10 N -0.389 5.389 11 C 0.064 3.936 12 C -0.077 4.077 13 C -0.204 4.204 14 C -0.096 4.096 15 C -0.231 4.231 16 C 0.103 3.897 17 O -0.121 6.121 18 C -0.466 4.466 19 H 0.124 0.876 20 C -0.139 4.139 21 N -0.515 5.515 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.189 4.189 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.239 0.761 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.246 0.754 36 H 0.235 0.765 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.090 0.910 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -27.163 -5.182 7.708 28.707 hybrid contribution 0.125 -0.437 -0.651 0.794 sum -27.038 -5.619 7.057 28.503 Atomic orbital electron populations 1.22014 0.94175 1.03466 1.02688 1.21345 0.94425 0.82522 1.02715 1.45943 1.06854 1.09446 1.75951 1.20658 0.82656 0.91436 0.75847 1.90731 1.55138 1.46092 1.49049 1.20806 0.81688 0.93284 1.04825 1.44728 1.05502 1.08576 1.81142 1.15805 0.81995 0.83592 0.77856 1.90917 1.67978 1.30242 1.58439 1.45225 1.04008 1.10391 1.79256 1.20010 0.86755 0.84248 1.02577 1.19277 0.93555 1.01818 0.93023 1.20564 0.94567 1.08831 0.96449 1.20808 0.93958 0.97736 0.97128 1.21368 1.01573 1.08285 0.91878 1.19064 0.91331 0.93309 0.85953 1.83575 1.22022 1.79982 1.26514 1.20760 0.77358 1.51603 0.96918 0.87600 1.24468 0.94694 0.95628 0.99151 1.69643 1.04202 1.47474 1.30204 0.86181 0.80211 0.78885 0.81634 1.19835 1.20757 1.18361 1.20091 0.92116 1.09100 0.97631 0.91830 0.91816 0.90613 0.91244 0.91265 0.76117 0.88450 0.88434 0.75445 0.76480 0.90928 0.90921 0.87239 0.86971 0.84841 0.90992 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.41 10.03 37.16 0.37 -0.04 16 2 C 0.11 0.57 6.39 -4.04 -0.03 0.55 16 3 N -0.73 -3.84 5.56 -60.30 -0.33 -4.18 16 4 C 0.51 4.28 7.90 -10.99 -0.09 4.19 16 5 O -0.53 -6.51 15.67 5.55 0.09 -6.43 16 6 C 0.12 1.00 6.15 -5.20 -0.03 0.97 16 7 N -0.74 -7.96 5.53 -66.41 -0.37 -8.32 16 8 C 0.71 9.55 8.57 -86.92 -0.74 8.80 16 9 O -0.60 -9.86 16.34 5.29 0.09 -9.77 16 10 N -0.73 -9.44 5.55 -66.42 -0.37 -9.80 16 11 C 0.19 2.62 5.80 -5.20 -0.03 2.59 16 12 C -0.08 -1.22 5.25 -104.65 -0.55 -1.77 16 13 C -0.18 -2.90 9.70 -39.53 -0.38 -3.28 16 14 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 15 C -0.21 -4.38 9.17 -39.39 -0.36 -4.74 16 16 C 0.16 3.47 6.65 -39.11 -0.26 3.21 16 17 O -0.22 -5.58 8.59 0.05 0.00 -5.58 16 18 C -0.39 -10.83 9.95 30.89 0.31 -10.53 16 19 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 20 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.07 13.96 55.48 0.77 -24.30 16 22 Si 0.91 21.52 28.62 -169.99 -4.86 16.65 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 26 C -0.17 -3.21 9.65 -39.40 -0.38 -3.59 16 27 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 0.98 8.47 -40.82 -0.35 0.64 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.41 4.26 7.45 -40.82 -0.30 3.95 16 36 H 0.40 4.67 8.48 -40.82 -0.35 4.33 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.13 2.92 5.64 -52.49 -0.30 2.62 16 42 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -33.63 372.99 -7.81 -41.45 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.78 Total: 8.34 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.67 Total: -3.68 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.30 Total: -46.60 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.17 Total: -21.78 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.86 Total: 16.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.63 -7.81 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113410926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.892 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds