Wall clock time and date at job start Tue Mar 31 2020 12:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46980 * 2 1 4 4 C 1.34779 * 119.99972 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99618 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.46499 * 109.47069 * 180.02562 * 6 4 3 8 8 C 1.34782 * 120.00406 * 180.02562 * 7 6 4 9 9 O 1.21591 * 119.99323 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00403 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99933 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47005 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.97666 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99513 * 12 11 10 27 27 H 1.09001 * 109.47076 * 300.00525 * 1 2 3 28 28 H 1.09000 * 109.46904 * 60.00028 * 1 2 3 29 29 H 1.08997 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47205 * 239.99969 * 2 1 3 31 31 H 1.08995 * 109.47049 * 119.99506 * 2 1 3 32 32 H 0.96998 * 120.00276 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47395 * 60.00084 * 6 4 3 34 34 H 1.09005 * 109.47393 * 299.99572 * 6 4 3 35 35 H 0.97009 * 120.00113 * 0.02562 * 7 6 4 36 36 H 0.97001 * 119.99467 * 359.97438 * 10 8 7 37 37 H 1.08993 * 109.47130 * 59.99768 * 11 10 8 38 38 H 1.09003 * 109.47080 * 299.99631 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 42 42 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8457 3.0483 -0.0001 7 7 5.3107 3.0483 0.0001 8 6 5.9847 4.2155 0.0001 9 8 5.3767 5.2685 -0.0004 10 7 7.3324 4.2155 -0.0003 11 6 8.0649 5.4842 0.0003 12 6 9.5465 5.2089 0.0003 13 6 10.2257 5.0825 1.1987 14 6 11.5853 4.8304 1.2029 15 6 12.2682 4.6972 0.0097 16 6 11.5902 4.8291 -1.1949 17 8 12.2598 4.7048 -2.3693 18 6 13.5999 4.5740 -2.2991 19 1 14.0846 4.4897 -1.3377 20 6 14.3557 4.5477 -3.4612 21 7 15.6633 4.4206 -3.3927 22 14 13.5174 4.6941 -5.1241 23 1 13.4287 6.1254 -5.5095 24 1 14.3059 3.9551 -6.1427 25 1 12.1511 4.1180 -5.0422 26 6 10.2247 5.0833 -1.1958 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.3880 2.1185 -0.0004 33 1 3.4820 3.5627 0.8894 34 1 3.4829 3.5617 -0.8906 35 1 5.7958 2.2082 0.0001 36 1 7.8174 3.3754 -0.0003 37 1 7.8018 6.0552 0.8907 38 1 7.8013 6.0564 -0.8892 39 1 9.6930 5.1811 2.1331 40 1 12.1129 4.7327 2.1403 41 1 13.3291 4.4951 0.0136 42 1 16.1920 4.4018 -4.2057 43 1 9.6940 5.1827 -2.1311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113410926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:48 Heat of formation + Delta-G solvation = -95.394065 kcal Electronic energy + Delta-G solvation = -25252.704631 eV Core-core repulsion = 21297.651919 eV Total energy + Delta-G solvation = -3955.052712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43171 -40.94803 -40.40333 -38.60832 -36.49387 -35.82944 -35.40297 -34.45379 -32.38868 -31.71533 -30.97093 -28.74006 -27.34343 -26.41217 -23.74930 -23.31967 -22.34704 -21.98832 -21.72200 -20.01196 -19.60981 -18.93581 -17.80114 -17.53597 -17.19666 -16.88534 -16.73248 -16.69490 -16.26028 -15.81947 -15.69037 -15.44569 -15.30491 -15.21107 -14.82555 -14.49435 -14.22329 -14.20713 -13.82932 -13.80256 -13.34089 -13.25788 -13.10090 -12.69289 -12.58844 -12.46685 -12.37525 -12.36578 -11.94529 -11.49623 -11.31360 -11.14041 -10.91875 -10.46142 -10.18161 -9.83785 -9.79571 -9.12286 -8.50404 -6.23056 0.33134 0.65112 1.31212 1.34517 1.44623 1.51081 1.56638 2.11112 2.25416 2.27214 2.75778 2.98919 3.10746 3.38972 3.65022 3.77739 4.07113 4.13843 4.21521 4.28930 4.36595 4.37339 4.44187 4.50485 4.52559 4.66012 4.72993 4.92919 4.94115 5.06370 5.19555 5.26935 5.31501 5.36563 5.38405 5.42845 5.63663 5.69344 5.74495 5.89074 5.91453 6.19795 6.41709 6.84105 6.97700 7.09737 7.50160 7.58198 8.60986 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.002078 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.349516 B =13469.558878 C =14338.338826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.110 3.890 3 N -0.712 5.712 4 C 0.510 3.490 5 O -0.577 6.577 6 C 0.121 3.879 7 N -0.734 5.734 8 C 0.708 3.292 9 O -0.627 6.627 10 N -0.731 5.731 11 C 0.194 3.806 12 C -0.062 4.062 13 C -0.157 4.157 14 C -0.075 4.075 15 C -0.228 4.228 16 C 0.118 3.882 17 O -0.246 6.246 18 C -0.398 4.398 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.922 5.922 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.268 1.268 25 H -0.264 1.264 26 C -0.168 4.168 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.420 0.580 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.411 0.589 36 H 0.407 0.593 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.284 0.716 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.858 -5.103 9.330 32.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.013 4.013 3 N -0.365 5.365 4 C 0.296 3.704 5 O -0.457 6.457 6 C -0.006 4.006 7 N -0.392 5.392 8 C 0.408 3.592 9 O -0.508 6.508 10 N -0.386 5.386 11 C 0.071 3.929 12 C -0.062 4.062 13 C -0.176 4.176 14 C -0.093 4.093 15 C -0.247 4.247 16 C 0.069 3.931 17 O -0.153 6.153 18 C -0.475 4.475 19 H 0.101 0.899 20 C -0.188 4.188 21 N -0.562 5.562 22 Si 0.791 3.209 23 H -0.192 1.192 24 H -0.193 1.193 25 H -0.188 1.188 26 C -0.188 4.188 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.258 0.742 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.248 0.752 36 H 0.243 0.757 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -30.781 -4.838 8.993 32.431 hybrid contribution 0.955 -0.541 -0.731 1.319 sum -29.826 -5.379 8.262 31.413 Atomic orbital electron populations 1.21966 0.91844 1.04197 1.03467 1.21411 0.96251 0.82017 1.01648 1.45871 1.06162 1.10322 1.74176 1.20713 0.83276 0.90995 0.75391 1.90717 1.56364 1.47166 1.51417 1.20983 0.80230 0.93341 1.06068 1.44721 1.06610 1.07822 1.80079 1.15841 0.81943 0.83742 0.77660 1.90900 1.68530 1.31411 1.59964 1.45080 1.04002 1.10280 1.79217 1.19913 0.84994 0.84809 1.03227 1.19490 0.94728 0.99924 0.92089 1.21055 0.93867 1.04824 0.97854 1.21148 0.94780 0.96475 0.96870 1.21404 1.00854 1.09327 0.93132 1.19589 0.92631 0.95242 0.85666 1.83519 1.20751 1.82791 1.28262 1.20704 0.78661 1.51758 0.96336 0.89923 1.25247 0.95288 0.95676 1.02551 1.69724 1.05398 1.49848 1.31266 0.85248 0.78878 0.79134 0.77654 1.19155 1.19275 1.18824 1.20291 0.90769 1.08495 0.99245 0.90933 0.91078 0.89959 0.92480 0.92283 0.74232 0.86945 0.87336 0.75191 0.75714 0.89467 0.91262 0.83229 0.83824 0.87226 0.90598 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.44 10.03 71.98 0.72 0.29 16 2 C 0.11 0.97 6.39 86.38 0.55 1.53 16 3 N -0.71 -6.18 5.56 -463.06 -2.57 -8.75 16 4 C 0.51 7.82 7.90 87.66 0.69 8.51 16 5 O -0.58 -13.69 15.67 -3.05 -0.05 -13.74 16 6 C 0.12 1.72 6.15 85.63 0.53 2.25 16 7 N -0.73 -14.29 5.53 -482.29 -2.67 -16.96 16 8 C 0.71 17.36 8.57 179.05 1.53 18.89 16 9 O -0.63 -19.15 16.34 -4.00 -0.07 -19.21 16 10 N -0.73 -16.70 5.55 -482.30 -2.68 -19.38 16 11 C 0.19 4.79 5.80 85.63 0.50 5.28 16 12 C -0.06 -1.79 5.25 -19.88 -0.10 -1.90 16 13 C -0.16 -4.28 9.70 22.30 0.22 -4.06 16 14 C -0.07 -2.38 10.04 22.25 0.22 -2.16 16 15 C -0.23 -9.56 9.17 22.39 0.21 -9.36 16 16 C 0.12 5.34 6.65 22.58 0.15 5.49 16 17 O -0.25 -13.18 8.59 -22.74 -0.20 -13.38 16 18 C -0.40 -23.25 9.95 67.92 0.68 -22.58 16 19 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 20 C 0.01 0.63 5.49 84.83 0.47 1.10 16 21 N -0.92 -54.85 13.96 21.61 0.30 -54.54 16 22 Si 0.97 45.53 28.62 68.60 1.96 47.49 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 26 C -0.17 -6.20 9.65 22.39 0.22 -5.99 16 27 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.42 0.95 8.47 -92.71 -0.79 0.16 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.41 7.90 7.45 -92.70 -0.69 7.21 16 36 H 0.41 8.38 8.48 -92.71 -0.79 7.60 16 37 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 38 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 41 H 0.11 5.10 5.64 -2.91 -0.02 5.09 16 42 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -75.94 372.99 -0.58 -76.52 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -1.19 Total: 24.65 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 6.57 Total: -2.70 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -7.62 Total: -99.63 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -0.31 Total: -46.33 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.96 Total: 47.49 kcal Total: -75.94 -0.58 -76.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113410926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.879 kcal (2) G-P(sol) polarization free energy of solvation -75.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds