Wall clock time and date at job start Tue Mar 31 2020 12:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47324 * 2 1 4 4 C 1.46496 * 120.00335 * 274.80352 * 3 2 1 5 5 C 1.50708 * 109.47209 * 263.66684 * 4 3 2 6 6 H 1.08002 * 119.99462 * 359.97438 * 5 4 3 7 7 C 1.37869 * 119.99887 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99740 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00327 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47281 * 90.00072 * 9 7 5 11 11 H 1.48510 * 109.47254 * 210.00186 * 9 7 5 12 12 H 1.48498 * 109.47232 * 329.99895 * 9 7 5 13 13 C 1.34780 * 119.99953 * 94.80056 * 3 2 1 14 14 O 1.21363 * 120.00071 * 354.61640 * 13 3 2 15 15 C 1.49335 * 119.99834 * 174.61417 * 13 3 2 16 16 O 1.21392 * 120.00422 * 0.02562 * 15 13 3 17 17 N 1.34777 * 119.99861 * 180.02562 * 15 13 3 18 18 C 1.39883 * 120.00224 * 185.12423 * 17 15 13 19 19 C 1.39039 * 120.51132 * 327.36902 * 18 17 15 20 20 C 1.38705 * 118.41967 * 179.97438 * 19 18 17 21 21 C 1.50697 * 120.31842 * 180.02562 * 20 19 18 22 22 C 1.38095 * 119.35452 * 0.02562 * 20 19 18 23 23 N 1.31992 * 120.99410 * 359.73255 * 22 20 19 24 24 C 1.32156 * 121.72055 * 0.54180 * 23 22 20 25 25 O 1.35723 * 119.73388 * 179.74906 * 24 23 22 26 26 C 1.42903 * 116.99908 * 359.71797 * 25 24 23 27 27 H 1.08992 * 109.47445 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46973 * 300.00313 * 1 2 3 29 29 H 1.09004 * 109.47016 * 60.00074 * 1 2 3 30 30 H 1.08998 * 109.46973 * 239.99687 * 2 1 3 31 31 H 1.08999 * 109.46472 * 120.00394 * 2 1 3 32 32 H 1.09002 * 109.47084 * 23.66233 * 4 3 2 33 33 H 1.08996 * 109.47948 * 143.66556 * 4 3 2 34 34 H 0.97003 * 119.99802 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00051 * 5.11937 * 17 15 13 36 36 H 1.08004 * 120.78646 * 359.95478 * 19 18 17 37 37 H 1.09003 * 109.46919 * 90.00454 * 21 20 19 38 38 H 1.09000 * 109.46913 * 210.00018 * 21 20 19 39 39 H 1.08996 * 109.47730 * 330.00713 * 21 20 19 40 40 H 1.08004 * 119.50465 * 180.02562 * 22 20 19 41 41 H 1.09004 * 109.47085 * 300.00191 * 26 25 24 42 42 H 1.09007 * 109.46973 * 60.00092 * 26 25 24 43 43 H 1.09000 * 109.47309 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1624 2.1072 -1.2642 5 6 3.5900 2.0128 -1.7379 6 1 4.3173 1.4669 -1.1552 7 6 3.9675 2.6233 -2.9150 8 7 5.2133 2.5405 -3.3286 9 14 2.7094 3.5668 -3.9231 10 1 2.6869 4.9854 -3.4846 11 1 3.0755 3.4989 -5.3608 12 1 1.3657 2.9662 -3.7257 13 6 2.3351 1.9839 1.1631 14 8 2.1243 1.4191 2.2164 15 6 2.9456 3.3468 1.1558 16 8 3.1561 3.9119 0.1023 17 7 3.2628 3.9493 2.3189 18 6 3.7343 5.2663 2.3185 19 6 4.5005 5.7415 1.2601 20 6 4.9450 7.0546 1.3042 21 6 5.7778 7.6141 0.1797 22 6 4.6169 7.8443 2.3886 23 7 3.8839 7.3694 3.3782 24 6 3.4433 6.1235 3.3808 25 8 2.6966 5.6756 4.4219 26 6 2.4336 6.6022 5.4775 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.5018 1.6689 -2.0122 33 1 1.8978 3.1539 -1.1144 34 1 5.4789 2.9704 -4.1566 35 1 3.1641 3.4698 3.1563 36 1 4.7441 5.1031 0.4236 37 1 5.1235 8.0546 -0.5726 38 1 6.4488 8.3790 0.5704 39 1 6.3633 6.8134 -0.2720 40 1 4.9614 8.8673 2.4252 41 1 3.3761 6.9330 5.9139 42 1 1.8955 7.4628 5.0799 43 1 1.8281 6.1179 6.2437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123832969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:41 Heat of formation + Delta-G solvation = -49.102474 kcal Electronic energy + Delta-G solvation = -27925.663169 eV Core-core repulsion = 23972.617811 eV Total energy + Delta-G solvation = -3953.045358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -41.06835 -39.98937 -38.23875 -37.78616 -35.94171 -34.57624 -33.04618 -32.61084 -30.72697 -30.26316 -27.91966 -27.73237 -26.23892 -25.22004 -23.47183 -22.71169 -22.09075 -21.01432 -19.41228 -18.33246 -17.66456 -17.08538 -16.78902 -16.58464 -16.03106 -15.85652 -15.20379 -14.91416 -14.57110 -14.33497 -14.11615 -13.85126 -13.81396 -13.42406 -13.21714 -13.03412 -12.64210 -12.61212 -12.46252 -12.18695 -12.00118 -11.92439 -11.76368 -11.74005 -11.08317 -11.05217 -10.80256 -10.71863 -10.62827 -10.42251 -10.21330 -9.80190 -9.55118 -9.04039 -8.71481 -8.49999 -7.98978 -7.78359 -6.09133 -4.06162 1.08084 1.36596 2.05414 2.77049 3.04512 3.28984 3.33886 3.37044 3.67008 3.90827 3.95346 4.39893 4.41017 4.79293 4.90853 5.10223 5.15292 5.18346 5.24674 5.24788 5.36303 5.43845 5.53115 5.58835 5.70315 5.74235 5.78745 5.91086 6.07747 6.09658 6.18395 6.30028 6.43755 6.45136 6.48669 6.72272 6.87885 7.09245 7.25293 7.43318 7.54767 7.84293 7.86038 8.19254 8.43850 8.58094 8.91145 9.51397 11.04056 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.005286 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.152387 B = 5295.411667 C = 7303.655221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.555 5.555 4 C 0.198 3.802 5 C -0.513 4.513 6 H 0.072 0.928 7 C 0.081 3.919 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.512 3.488 14 O -0.552 6.552 15 C 0.494 3.506 16 O -0.442 6.442 17 N -0.646 5.646 18 C 0.098 3.902 19 C -0.053 4.053 20 C -0.149 4.149 21 C -0.105 4.105 22 C 0.109 3.891 23 N -0.521 5.521 24 C 0.287 3.713 25 O -0.309 6.309 26 C 0.044 3.956 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.263 0.737 35 H 0.421 0.579 36 H 0.170 0.830 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.158 0.842 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 7.265 11.477 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.285 5.285 4 C 0.078 3.922 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.121 4.121 8 N -0.536 5.536 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.193 1.193 13 C 0.294 3.706 14 O -0.433 6.433 15 C 0.275 3.725 16 O -0.310 6.310 17 N -0.295 5.295 18 C 0.000 4.000 19 C -0.080 4.080 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.047 4.047 23 N -0.243 5.243 24 C 0.105 3.895 25 O -0.216 6.216 26 C -0.051 4.051 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.259 0.741 36 H 0.187 0.813 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.175 0.825 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.359 7.633 11.777 14.696 hybrid contribution -0.333 0.059 -0.833 0.900 sum -4.692 7.692 10.944 14.176 Atomic orbital electron populations 1.22121 0.96209 1.01778 1.02194 1.21471 0.93877 0.82385 1.03471 1.47928 1.59537 1.13559 1.07471 1.20305 0.98829 0.93129 0.79932 1.21083 0.92965 1.33897 1.07206 0.90957 1.24706 0.94962 0.95388 0.97095 1.69894 1.16459 1.44461 1.22795 0.86912 0.82182 0.81446 0.79457 1.19831 1.21341 1.19264 1.19647 0.80085 0.86340 0.84494 1.90672 1.55529 1.66267 1.30805 1.20403 0.80473 0.87894 0.83696 1.90897 1.47211 1.63839 1.29098 1.42967 1.64292 1.11409 1.10814 1.17718 1.00760 0.85552 0.95996 1.21873 0.92048 0.95969 0.98115 1.20729 1.01820 0.94404 0.98206 1.20654 0.98562 1.01322 0.95676 1.22174 0.94424 0.99560 0.88501 1.67263 1.15126 1.12375 1.29574 1.19549 0.92880 0.88474 0.88600 1.86215 1.66200 1.40121 1.29082 1.22806 1.01268 0.93188 0.87863 0.91811 0.92574 0.92437 0.89671 0.90188 0.95132 0.92694 0.92664 0.74097 0.81314 0.90932 0.91475 0.90801 0.82515 0.92460 0.92474 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.11 1.88 6.11 -4.04 -0.02 1.86 16 3 N -0.55 -11.39 2.47 -175.62 -0.43 -11.83 16 4 C 0.20 4.56 3.85 -5.19 -0.02 4.54 16 5 C -0.51 -13.81 8.33 -34.44 -0.29 -14.10 16 6 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 8 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 9 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.51 10.52 7.67 -11.64 -0.09 10.43 16 14 O -0.55 -11.34 16.04 5.49 0.09 -11.25 16 15 C 0.49 9.99 7.59 -11.64 -0.09 9.90 16 16 O -0.44 -10.02 9.44 5.46 0.05 -9.97 16 17 N -0.65 -11.26 5.20 -10.08 -0.05 -11.32 16 18 C 0.10 1.65 6.38 -83.39 -0.53 1.12 16 19 C -0.05 -0.90 8.51 -39.11 -0.33 -1.23 16 20 C -0.15 -2.10 5.89 -104.50 -0.62 -2.71 16 21 C -0.10 -1.23 10.03 36.00 0.36 -0.87 16 22 C 0.11 1.40 10.84 -17.54 -0.19 1.21 16 23 N -0.52 -7.50 9.22 -13.16 -0.12 -7.62 16 24 C 0.29 4.45 7.51 -16.92 -0.13 4.32 16 25 O -0.31 -4.36 10.02 -18.88 -0.19 -4.55 16 26 C 0.04 0.45 10.38 101.05 1.05 1.50 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 31 H 0.08 1.33 7.36 -51.93 -0.38 0.95 16 32 H 0.03 0.69 7.08 -51.93 -0.37 0.32 16 33 H 0.06 1.31 5.28 -51.93 -0.27 1.04 16 34 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 35 H 0.42 6.72 8.01 -40.82 -0.33 6.39 16 36 H 0.17 3.32 6.12 -52.48 -0.32 3.00 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 40 H 0.16 1.49 8.06 -52.48 -0.42 1.06 16 41 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 42 H 0.06 0.58 8.10 -51.92 -0.42 0.16 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -31.78 362.88 -5.60 -37.38 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.90 Total: 6.99 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: -0.61 Total: 16.15 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.17 Total: -56.50 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.78 -5.60 -37.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123832969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.723 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds