Wall clock time and date at job start Tue Mar 31 2020 12:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47324 * 2 1 4 4 C 1.46496 * 120.00335 * 274.80352 * 3 2 1 5 5 C 1.50708 * 109.47209 * 263.66684 * 4 3 2 6 6 H 1.08002 * 119.99462 * 359.97438 * 5 4 3 7 7 C 1.37869 * 119.99887 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99740 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00327 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47281 * 90.00072 * 9 7 5 11 11 H 1.48510 * 109.47254 * 210.00186 * 9 7 5 12 12 H 1.48498 * 109.47232 * 329.99895 * 9 7 5 13 13 C 1.34780 * 119.99953 * 94.80056 * 3 2 1 14 14 O 1.21363 * 120.00071 * 354.61640 * 13 3 2 15 15 C 1.49335 * 119.99834 * 174.61417 * 13 3 2 16 16 O 1.21392 * 120.00422 * 0.02562 * 15 13 3 17 17 N 1.34777 * 119.99861 * 180.02562 * 15 13 3 18 18 C 1.39883 * 120.00224 * 185.12423 * 17 15 13 19 19 C 1.39039 * 120.51132 * 327.36902 * 18 17 15 20 20 C 1.38705 * 118.41967 * 179.97438 * 19 18 17 21 21 C 1.50697 * 120.31842 * 180.02562 * 20 19 18 22 22 C 1.38095 * 119.35452 * 0.02562 * 20 19 18 23 23 N 1.31992 * 120.99410 * 359.73255 * 22 20 19 24 24 C 1.32156 * 121.72055 * 0.54180 * 23 22 20 25 25 O 1.35723 * 119.73388 * 179.74906 * 24 23 22 26 26 C 1.42903 * 116.99908 * 359.71797 * 25 24 23 27 27 H 1.08992 * 109.47445 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46973 * 300.00313 * 1 2 3 29 29 H 1.09004 * 109.47016 * 60.00074 * 1 2 3 30 30 H 1.08998 * 109.46973 * 239.99687 * 2 1 3 31 31 H 1.08999 * 109.46472 * 120.00394 * 2 1 3 32 32 H 1.09002 * 109.47084 * 23.66233 * 4 3 2 33 33 H 1.08996 * 109.47948 * 143.66556 * 4 3 2 34 34 H 0.97003 * 119.99802 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00051 * 5.11937 * 17 15 13 36 36 H 1.08004 * 120.78646 * 359.95478 * 19 18 17 37 37 H 1.09003 * 109.46919 * 90.00454 * 21 20 19 38 38 H 1.09000 * 109.46913 * 210.00018 * 21 20 19 39 39 H 1.08996 * 109.47730 * 330.00713 * 21 20 19 40 40 H 1.08004 * 119.50465 * 180.02562 * 22 20 19 41 41 H 1.09004 * 109.47085 * 300.00191 * 26 25 24 42 42 H 1.09007 * 109.46973 * 60.00092 * 26 25 24 43 43 H 1.09000 * 109.47309 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1624 2.1072 -1.2642 5 6 3.5900 2.0128 -1.7379 6 1 4.3173 1.4669 -1.1552 7 6 3.9675 2.6233 -2.9150 8 7 5.2133 2.5405 -3.3286 9 14 2.7094 3.5668 -3.9231 10 1 2.6869 4.9854 -3.4846 11 1 3.0755 3.4989 -5.3608 12 1 1.3657 2.9662 -3.7257 13 6 2.3351 1.9839 1.1631 14 8 2.1243 1.4191 2.2164 15 6 2.9456 3.3468 1.1558 16 8 3.1561 3.9119 0.1023 17 7 3.2628 3.9493 2.3189 18 6 3.7343 5.2663 2.3185 19 6 4.5005 5.7415 1.2601 20 6 4.9450 7.0546 1.3042 21 6 5.7778 7.6141 0.1797 22 6 4.6169 7.8443 2.3886 23 7 3.8839 7.3694 3.3782 24 6 3.4433 6.1235 3.3808 25 8 2.6966 5.6756 4.4219 26 6 2.4336 6.6022 5.4775 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.5018 1.6689 -2.0122 33 1 1.8978 3.1539 -1.1144 34 1 5.4789 2.9704 -4.1566 35 1 3.1641 3.4698 3.1563 36 1 4.7441 5.1031 0.4236 37 1 5.1235 8.0546 -0.5726 38 1 6.4488 8.3790 0.5704 39 1 6.3633 6.8134 -0.2720 40 1 4.9614 8.8673 2.4252 41 1 3.3761 6.9330 5.9139 42 1 1.8955 7.4628 5.0799 43 1 1.8281 6.1179 6.2437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123832969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:34 Heat of formation + Delta-G solvation = -72.520577 kcal Electronic energy + Delta-G solvation = -27926.678654 eV Core-core repulsion = 23972.617811 eV Total energy + Delta-G solvation = -3954.060843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -42.40689 -41.41646 -39.68882 -38.95931 -37.56080 -36.03790 -34.64659 -34.14190 -32.23241 -31.54363 -29.61989 -28.86988 -27.22549 -26.66997 -24.73333 -24.60001 -23.34914 -22.36347 -20.90560 -19.48856 -19.12998 -19.07030 -18.31431 -17.91596 -17.39672 -17.14227 -16.79395 -16.44740 -16.03049 -15.67604 -15.41065 -15.30433 -14.99992 -14.79991 -14.72958 -14.40123 -14.24973 -13.93150 -13.62703 -13.56219 -13.47475 -13.23554 -12.93725 -12.69799 -12.68418 -12.59339 -12.24711 -12.09248 -12.06093 -11.99684 -11.87949 -11.65309 -11.02558 -10.73272 -10.38079 -10.10542 -9.66279 -9.01575 -8.23784 -6.24906 -0.16877 0.14726 0.50958 1.28852 1.38500 1.41694 1.47262 1.99438 2.13867 2.38154 2.45285 2.66843 3.13453 3.24840 3.37814 3.73312 3.98221 4.04142 4.12992 4.16974 4.31780 4.46266 4.47384 4.47827 4.66921 4.67520 4.71881 4.76917 4.82425 4.89627 4.91062 4.98688 5.05787 5.19661 5.29062 5.34968 5.45212 5.50841 5.52972 5.95846 6.08566 6.15569 6.36106 6.66521 6.70724 6.72113 6.97272 7.36228 8.93114 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.005286 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.152387 B = 5295.411667 C = 7303.655221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.560 5.560 4 C 0.211 3.789 5 C -0.506 4.506 6 H 0.027 0.973 7 C 0.026 3.974 8 N -0.945 5.945 9 Si 0.934 3.066 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.241 1.241 13 C 0.508 3.492 14 O -0.554 6.554 15 C 0.491 3.509 16 O -0.475 6.475 17 N -0.633 5.633 18 C 0.069 3.931 19 C -0.070 4.070 20 C -0.152 4.152 21 C -0.102 4.102 22 C 0.126 3.874 23 N -0.520 5.520 24 C 0.289 3.711 25 O -0.320 6.320 26 C 0.038 3.962 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.265 0.735 35 H 0.427 0.573 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.202 0.798 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 8.906 12.384 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.291 5.291 4 C 0.089 3.911 5 C -0.545 4.545 6 H 0.045 0.955 7 C -0.172 4.172 8 N -0.586 5.586 9 Si 0.758 3.242 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.164 1.164 13 C 0.290 3.710 14 O -0.434 6.434 15 C 0.273 3.727 16 O -0.346 6.346 17 N -0.281 5.281 18 C -0.028 4.028 19 C -0.098 4.098 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.030 4.030 23 N -0.243 5.243 24 C 0.108 3.892 25 O -0.228 6.228 26 C -0.056 4.056 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.266 0.734 36 H 0.152 0.848 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.219 0.781 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.078 9.249 12.744 16.879 hybrid contribution 0.288 -0.424 -0.946 1.076 sum -5.790 8.825 11.798 15.831 Atomic orbital electron populations 1.22046 0.93552 1.03761 1.01862 1.21748 0.96036 0.80481 1.03661 1.47995 1.59716 1.14772 1.06579 1.20007 0.96324 0.93524 0.81205 1.21171 0.94152 1.32629 1.06498 0.95497 1.25513 0.96804 0.96402 0.98442 1.70039 1.18757 1.46194 1.23628 0.85918 0.80840 0.79711 0.77685 1.20153 1.20870 1.16415 1.19771 0.80022 0.86561 0.84597 1.90654 1.55684 1.66423 1.30681 1.20469 0.80353 0.87835 0.84088 1.90881 1.48946 1.64585 1.30202 1.42808 1.63347 1.11853 1.10135 1.17851 1.02293 0.85478 0.97169 1.21717 0.93393 0.97202 0.97470 1.20991 1.01741 0.93249 0.99468 1.20702 0.98660 1.01541 0.95061 1.22862 0.92338 1.00887 0.86896 1.67421 1.15323 1.11590 1.29951 1.19546 0.92702 0.88490 0.88475 1.86204 1.65696 1.41449 1.29429 1.23103 1.02085 0.93142 0.87287 0.88674 0.93217 0.92360 0.89472 0.90063 0.93475 0.93065 0.92617 0.73450 0.84809 0.90570 0.87880 0.92663 0.78135 0.91874 0.92299 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 10.24 71.98 0.74 -3.34 16 2 C 0.10 3.40 6.11 86.38 0.53 3.93 16 3 N -0.56 -23.15 2.47 -827.88 -2.05 -25.20 16 4 C 0.21 9.72 3.85 85.64 0.33 10.05 16 5 C -0.51 -28.17 8.33 25.60 0.21 -27.96 16 6 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 7 C 0.03 1.49 5.47 84.65 0.46 1.96 16 8 N -0.95 -57.95 13.96 21.45 0.30 -57.65 16 9 Si 0.93 43.32 27.47 68.60 1.88 45.20 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 13 C 0.51 21.26 7.67 87.23 0.67 21.93 16 14 O -0.55 -22.81 16.04 -3.29 -0.05 -22.86 16 15 C 0.49 20.64 7.59 87.23 0.66 21.30 16 16 O -0.47 -22.56 9.44 -3.38 -0.03 -22.59 16 17 N -0.63 -22.81 5.20 -304.15 -1.58 -24.39 16 18 C 0.07 2.39 6.38 38.37 0.24 2.64 16 19 C -0.07 -2.49 8.51 22.57 0.19 -2.30 16 20 C -0.15 -4.16 5.89 -19.79 -0.12 -4.27 16 21 C -0.10 -2.29 10.03 71.23 0.71 -1.57 16 22 C 0.13 2.90 10.84 84.63 0.92 3.82 16 23 N -0.52 -13.85 9.22 -308.42 -2.84 -16.69 16 24 C 0.29 8.73 7.51 84.96 0.64 9.37 16 25 O -0.32 -8.66 10.02 -90.45 -0.91 -9.57 16 26 C 0.04 0.70 10.38 113.37 1.18 1.88 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 2.84 8.11 -2.39 -0.02 2.83 16 31 H 0.08 2.67 7.36 -2.39 -0.02 2.65 16 32 H 0.05 2.03 7.08 -2.39 -0.02 2.02 16 33 H 0.05 2.46 5.28 -2.39 -0.01 2.44 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.43 13.96 8.01 -92.71 -0.74 13.21 16 36 H 0.13 5.72 6.12 -2.91 -0.02 5.70 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.54 8.09 -2.39 -0.02 1.52 16 39 H 0.05 1.44 8.09 -2.39 -0.02 1.42 16 40 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.06 1.09 8.11 -2.39 -0.02 1.07 16 42 H 0.06 1.06 8.10 -2.38 -0.02 1.04 16 43 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -71.56 362.88 2.34 -69.23 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.25 Total: 27.09 kcal Atomic # 6 Polarization: 30.06 SS G_CDS: 7.37 Total: 37.44 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -6.17 Total: -123.93 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.99 Total: -55.02 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -71.56 2.34 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123832969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.295 kcal (2) G-P(sol) polarization free energy of solvation -71.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds