Wall clock time and date at job start Tue Mar 31 2020 12:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46959 * 2 1 4 4 C 1.35728 * 116.99525 * 179.97438 * 3 2 1 5 5 N 1.32146 * 119.73696 * 0.02562 * 4 3 2 6 6 C 1.31996 * 121.72775 * 180.02562 * 5 4 3 7 7 C 1.38099 * 120.98470 * 359.97438 * 6 5 4 8 8 C 1.38703 * 119.35975 * 0.29659 * 7 6 5 9 9 C 1.39035 * 118.41780 * 359.46700 * 8 7 6 10 10 N 1.39885 * 120.51402 * 180.24179 * 9 8 7 11 11 C 1.34771 * 119.99770 * 327.35248 * 10 9 8 12 12 O 1.21388 * 120.00110 * 5.12907 * 11 10 9 13 13 C 1.49339 * 120.00119 * 185.12230 * 11 10 9 14 14 O 1.21360 * 119.99379 * 0.02562 * 13 11 10 15 15 N 1.34769 * 120.00370 * 180.02562 * 13 11 10 16 16 C 1.46495 * 120.00080 * 174.61459 * 15 13 11 17 17 C 1.53004 * 109.47123 * 94.80620 * 16 15 13 18 18 C 1.46504 * 119.99957 * 354.61276 * 15 13 11 19 19 C 1.50699 * 109.47356 * 83.66740 * 18 15 13 20 20 H 1.08005 * 119.99900 * 0.02562 * 19 18 15 21 21 C 1.37873 * 120.00183 * 179.97438 * 19 18 15 22 22 N 1.31511 * 120.00150 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99792 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47162 * 60.00337 * 23 21 19 25 25 H 1.48505 * 109.47102 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47311 * 300.00243 * 23 21 19 27 27 H 1.09005 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47111 * 299.99497 * 1 2 3 29 29 H 1.08995 * 109.47596 * 59.99731 * 1 2 3 30 30 H 1.08996 * 109.47002 * 240.00189 * 2 1 3 31 31 H 1.09002 * 109.47222 * 120.00096 * 2 1 3 32 32 H 1.08000 * 119.50792 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.32104 * 180.02562 * 7 6 5 34 34 H 1.08005 * 120.79414 * 179.69811 * 8 7 6 35 35 H 0.97001 * 120.00144 * 147.36102 * 10 9 8 36 36 H 1.08996 * 109.47174 * 214.79754 * 16 15 13 37 37 H 1.08989 * 109.47579 * 334.80183 * 16 15 13 38 38 H 1.08998 * 109.47236 * 180.02562 * 17 16 15 39 39 H 1.09008 * 109.46636 * 299.99959 * 17 16 15 40 40 H 1.08993 * 109.47721 * 59.99278 * 17 16 15 41 41 H 1.08996 * 109.47410 * 203.67335 * 18 15 13 42 42 H 1.09000 * 109.47283 * 323.66899 * 18 15 13 43 43 H 0.97000 * 120.00178 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 7 4.1520 0.4734 0.0005 6 6 5.4658 0.6007 0.0015 7 6 6.0592 1.8477 0.0021 8 6 5.2599 2.9812 0.0079 9 6 3.8792 2.8173 0.0016 10 7 3.0318 3.9302 0.0019 11 6 3.4029 5.0595 0.6371 12 8 4.5095 5.1436 1.1289 13 6 2.4528 6.2074 0.7358 14 8 1.3463 6.1231 0.2444 15 7 2.8240 7.3368 1.3706 16 6 1.9391 8.5043 1.3660 17 6 1.0843 8.5012 2.6351 18 6 4.1125 7.3970 2.0651 19 6 5.2004 7.7322 1.0776 20 1 4.9563 7.8856 0.0367 21 6 6.5071 7.8443 1.5030 22 7 6.8042 7.6581 2.7705 23 14 7.8555 8.2591 0.2786 24 1 7.5681 9.5746 -0.3475 25 1 9.1617 8.3203 0.9827 26 1 7.9090 7.2117 -0.7727 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 6.0859 -0.2835 0.0019 33 1 7.1353 1.9394 0.0026 34 1 5.6994 3.9677 0.0134 35 1 2.1771 3.8892 -0.4549 36 1 2.5382 9.4142 1.3339 37 1 1.2905 8.4652 0.4910 38 1 0.4255 9.3696 2.6315 39 1 0.4851 7.5912 2.6673 40 1 1.7329 8.5403 3.5102 41 1 4.0735 8.1652 2.8374 42 1 4.3235 6.4311 2.5240 43 1 7.7236 7.7365 3.0697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124014882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:45 Heat of formation + Delta-G solvation = -52.417801 kcal Electronic energy + Delta-G solvation = -27694.045077 eV Core-core repulsion = 23740.855956 eV Total energy + Delta-G solvation = -3953.189122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98597 -39.89498 -38.22433 -37.66822 -35.80449 -34.48811 -32.67056 -32.11990 -31.34210 -30.49840 -29.26838 -27.08627 -25.14963 -24.31731 -23.09575 -22.92756 -22.37551 -21.20518 -19.33643 -18.43721 -17.67484 -16.83995 -16.60196 -16.46183 -16.18816 -15.83516 -15.04011 -14.95642 -14.89729 -14.30776 -14.11077 -13.87300 -13.72393 -13.39206 -13.14428 -12.95868 -12.67823 -12.43342 -12.38044 -12.24033 -11.98319 -11.68472 -11.59580 -11.56498 -10.98537 -10.86623 -10.84298 -10.62523 -10.61099 -10.46538 -9.99546 -9.77536 -9.71303 -9.20818 -8.67598 -8.29343 -7.93405 -7.77387 -6.04364 -4.06619 1.12236 1.40165 2.14310 2.85928 2.97060 3.29963 3.34654 3.37097 3.75314 3.98466 4.06111 4.40042 4.44891 4.89768 4.90439 4.94387 5.03272 5.15085 5.23146 5.31827 5.35967 5.47511 5.53744 5.65197 5.68758 5.71518 5.79677 5.89345 6.06898 6.15125 6.24517 6.28217 6.44092 6.55541 6.68279 6.75688 7.24843 7.34251 7.39101 7.54897 7.83919 7.86726 8.07684 8.17479 8.33649 8.66079 8.93325 9.55582 11.04476 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.004698 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.531749 B = 5958.001066 C = 7963.920718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.070 3.930 3 O -0.307 6.307 4 C 0.296 3.704 5 N -0.526 5.526 6 C 0.109 3.891 7 C -0.185 4.185 8 C -0.052 4.052 9 C 0.095 3.905 10 N -0.648 5.648 11 C 0.489 3.511 12 O -0.433 6.433 13 C 0.509 3.491 14 O -0.559 6.559 15 N -0.559 5.559 16 C 0.111 3.889 17 C -0.164 4.164 18 C 0.229 3.771 19 C -0.515 4.515 20 H 0.053 0.947 21 C 0.070 3.930 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.167 0.833 35 H 0.420 0.580 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -11.684 -4.381 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.006 4.006 3 O -0.215 6.215 4 C 0.114 3.886 5 N -0.249 5.249 6 C -0.046 4.046 7 C -0.205 4.205 8 C -0.079 4.079 9 C -0.004 4.004 10 N -0.298 5.298 11 C 0.271 3.729 12 O -0.301 6.301 13 C 0.291 3.709 14 O -0.440 6.440 15 N -0.289 5.289 16 C -0.012 4.012 17 C -0.222 4.222 18 C 0.110 3.890 19 C -0.553 4.553 20 H 0.071 0.929 21 C -0.132 4.132 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.158 0.842 34 H 0.184 0.816 35 H 0.258 0.742 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.868 -12.180 -4.061 15.058 hybrid contribution 1.005 0.790 -0.796 1.506 sum -6.863 -11.391 -4.857 14.157 Atomic orbital electron populations 1.21824 0.93147 1.02661 1.03494 1.22547 0.94577 0.81152 1.02291 1.86219 1.16542 1.30539 1.88215 1.19542 0.84351 0.88460 0.96282 1.67281 1.06743 1.31644 1.19262 1.22289 0.88942 0.97424 0.95982 1.21962 1.01626 0.92496 1.04456 1.21931 0.90533 1.01814 0.93637 1.17751 0.90858 0.84560 1.07182 1.43006 1.22192 1.10594 1.53962 1.20477 0.88685 0.83663 0.80122 1.90963 1.19213 1.78895 1.41001 1.19668 0.86527 0.84292 0.80438 1.90657 1.21503 1.82247 1.49598 1.48297 1.21232 1.10380 1.49002 1.21434 0.92853 0.88464 0.98445 1.22106 0.99856 1.01677 0.98577 1.19925 0.76672 0.99906 0.92449 1.21157 0.91902 1.47756 0.94521 0.92858 1.24788 0.98204 0.95163 0.95090 1.69903 1.19339 1.49306 1.14331 0.86663 0.81163 0.78844 0.81317 1.20393 1.21234 1.20286 0.90483 0.91561 0.91609 0.91805 0.91762 0.82475 0.84206 0.81563 0.74226 0.89915 0.90551 0.92033 0.92690 0.92214 0.94901 0.91807 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.07 0.77 6.03 37.16 0.22 0.99 16 3 O -0.31 -4.42 9.67 -18.89 -0.18 -4.61 16 4 C 0.30 4.61 7.51 -16.92 -0.13 4.48 16 5 N -0.53 -7.55 9.21 -13.15 -0.12 -7.67 16 6 C 0.11 1.36 11.17 -17.53 -0.20 1.17 16 7 C -0.18 -2.50 10.10 -39.46 -0.40 -2.89 16 8 C -0.05 -0.87 8.83 -39.11 -0.35 -1.21 16 9 C 0.09 1.60 6.38 -83.39 -0.53 1.07 16 10 N -0.65 -11.40 5.20 -10.08 -0.05 -11.45 16 11 C 0.49 10.06 7.59 -11.64 -0.09 9.97 16 12 O -0.43 -10.06 9.44 5.46 0.05 -10.01 16 13 C 0.51 10.69 7.67 -11.64 -0.09 10.60 16 14 O -0.56 -11.72 16.04 5.49 0.09 -11.64 16 15 N -0.56 -11.85 2.47 -175.62 -0.43 -12.28 16 16 C 0.11 1.96 6.11 -4.04 -0.02 1.93 16 17 C -0.16 -2.49 10.24 37.16 0.38 -2.11 16 18 C 0.23 5.62 4.78 -5.19 -0.02 5.59 16 19 C -0.51 -13.69 7.78 -34.44 -0.27 -13.96 16 20 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 21 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 22 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 23 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.17 3.17 6.12 -52.48 -0.32 2.85 16 35 H 0.42 6.79 8.02 -40.82 -0.33 6.47 16 36 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 37 H 0.08 1.31 7.36 -51.94 -0.38 0.92 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.03 0.83 8.02 -51.93 -0.42 0.42 16 42 H 0.06 1.71 5.85 -51.93 -0.30 1.41 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -30.87 366.90 -6.55 -37.42 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.94 Total: 6.68 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: -1.20 Total: 16.50 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.13 Total: -55.96 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.04 Total: -26.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.87 -6.55 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124014882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.000 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds