Wall clock time and date at job start Tue Mar 31 2020 12:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46959 * 2 1 4 4 C 1.35728 * 116.99525 * 179.97438 * 3 2 1 5 5 N 1.32146 * 119.73696 * 0.02562 * 4 3 2 6 6 C 1.31996 * 121.72775 * 180.02562 * 5 4 3 7 7 C 1.38099 * 120.98470 * 359.97438 * 6 5 4 8 8 C 1.38703 * 119.35975 * 0.29659 * 7 6 5 9 9 C 1.39035 * 118.41780 * 359.46700 * 8 7 6 10 10 N 1.39885 * 120.51402 * 180.24179 * 9 8 7 11 11 C 1.34771 * 119.99770 * 327.35248 * 10 9 8 12 12 O 1.21388 * 120.00110 * 5.12907 * 11 10 9 13 13 C 1.49339 * 120.00119 * 185.12230 * 11 10 9 14 14 O 1.21360 * 119.99379 * 0.02562 * 13 11 10 15 15 N 1.34769 * 120.00370 * 180.02562 * 13 11 10 16 16 C 1.46495 * 120.00080 * 174.61459 * 15 13 11 17 17 C 1.53004 * 109.47123 * 94.80620 * 16 15 13 18 18 C 1.46504 * 119.99957 * 354.61276 * 15 13 11 19 19 C 1.50699 * 109.47356 * 83.66740 * 18 15 13 20 20 H 1.08005 * 119.99900 * 0.02562 * 19 18 15 21 21 C 1.37873 * 120.00183 * 179.97438 * 19 18 15 22 22 N 1.31511 * 120.00150 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99792 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47162 * 60.00337 * 23 21 19 25 25 H 1.48505 * 109.47102 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47311 * 300.00243 * 23 21 19 27 27 H 1.09005 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47111 * 299.99497 * 1 2 3 29 29 H 1.08995 * 109.47596 * 59.99731 * 1 2 3 30 30 H 1.08996 * 109.47002 * 240.00189 * 2 1 3 31 31 H 1.09002 * 109.47222 * 120.00096 * 2 1 3 32 32 H 1.08000 * 119.50792 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.32104 * 180.02562 * 7 6 5 34 34 H 1.08005 * 120.79414 * 179.69811 * 8 7 6 35 35 H 0.97001 * 120.00144 * 147.36102 * 10 9 8 36 36 H 1.08996 * 109.47174 * 214.79754 * 16 15 13 37 37 H 1.08989 * 109.47579 * 334.80183 * 16 15 13 38 38 H 1.08998 * 109.47236 * 180.02562 * 17 16 15 39 39 H 1.09008 * 109.46636 * 299.99959 * 17 16 15 40 40 H 1.08993 * 109.47721 * 59.99278 * 17 16 15 41 41 H 1.08996 * 109.47410 * 203.67335 * 18 15 13 42 42 H 1.09000 * 109.47283 * 323.66899 * 18 15 13 43 43 H 0.97000 * 120.00178 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 7 4.1520 0.4734 0.0005 6 6 5.4658 0.6007 0.0015 7 6 6.0592 1.8477 0.0021 8 6 5.2599 2.9812 0.0079 9 6 3.8792 2.8173 0.0016 10 7 3.0318 3.9302 0.0019 11 6 3.4029 5.0595 0.6371 12 8 4.5095 5.1436 1.1289 13 6 2.4528 6.2074 0.7358 14 8 1.3463 6.1231 0.2444 15 7 2.8240 7.3368 1.3706 16 6 1.9391 8.5043 1.3660 17 6 1.0843 8.5012 2.6351 18 6 4.1125 7.3970 2.0651 19 6 5.2004 7.7322 1.0776 20 1 4.9563 7.8856 0.0367 21 6 6.5071 7.8443 1.5030 22 7 6.8042 7.6581 2.7705 23 14 7.8555 8.2591 0.2786 24 1 7.5681 9.5746 -0.3475 25 1 9.1617 8.3203 0.9827 26 1 7.9090 7.2117 -0.7727 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 6.0859 -0.2835 0.0019 33 1 7.1353 1.9394 0.0026 34 1 5.6994 3.9677 0.0134 35 1 2.1771 3.8892 -0.4549 36 1 2.5382 9.4142 1.3339 37 1 1.2905 8.4652 0.4910 38 1 0.4255 9.3696 2.6315 39 1 0.4851 7.5912 2.6673 40 1 1.7329 8.5403 3.5102 41 1 4.0735 8.1652 2.8374 42 1 4.3235 6.4311 2.5240 43 1 7.7236 7.7365 3.0697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124014882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:43 Heat of formation + Delta-G solvation = -73.723472 kcal Electronic energy + Delta-G solvation = -27694.968960 eV Core-core repulsion = 23740.855956 eV Total energy + Delta-G solvation = -3954.113005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.32974 -41.34146 -39.66833 -38.88674 -37.46425 -35.96432 -34.66776 -33.10518 -32.44380 -32.03296 -30.43763 -29.03100 -26.60989 -25.41575 -25.00799 -24.20704 -23.39697 -22.59430 -20.85411 -19.60320 -19.13667 -18.56724 -18.36997 -17.70292 -17.43144 -17.26736 -16.71374 -16.53131 -16.16582 -15.98504 -15.34424 -15.23830 -14.90191 -14.78335 -14.50711 -14.35261 -14.23115 -13.70965 -13.48719 -13.37576 -13.31777 -13.24219 -13.15588 -12.71057 -12.69106 -12.45736 -12.32814 -12.08157 -12.03619 -11.79635 -11.69018 -11.68363 -10.98233 -10.58715 -10.46176 -10.06027 -9.65089 -9.05736 -8.12118 -6.20755 -0.11539 0.20788 0.56724 1.36393 1.41400 1.42613 1.49947 1.92600 2.19427 2.40881 2.57960 2.75145 3.21589 3.31241 3.41370 3.81072 4.06122 4.10803 4.11156 4.15030 4.21413 4.33854 4.41171 4.47830 4.50805 4.75137 4.80281 4.87926 4.93561 4.96528 5.01150 5.11314 5.18473 5.23363 5.26326 5.38340 5.51095 5.57440 5.76559 6.02355 6.12762 6.20607 6.29466 6.71379 6.76094 6.83000 7.05545 7.44983 8.96120 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.004698 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.531749 B = 5958.001066 C = 7963.920718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.320 6.320 4 C 0.296 3.704 5 N -0.528 5.528 6 C 0.125 3.875 7 C -0.183 4.183 8 C -0.067 4.067 9 C 0.063 3.937 10 N -0.634 5.634 11 C 0.488 3.512 12 O -0.468 6.468 13 C 0.506 3.494 14 O -0.559 6.559 15 N -0.564 5.564 16 C 0.103 3.897 17 C -0.154 4.154 18 C 0.249 3.751 19 C -0.518 4.518 20 H 0.045 0.955 21 C 0.024 3.976 22 N -0.921 5.921 23 Si 0.950 3.050 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.277 1.277 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.203 0.797 33 H 0.166 0.834 34 H 0.137 0.863 35 H 0.425 0.575 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.022 0.978 42 H 0.040 0.960 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.801 -13.051 -5.298 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.228 6.228 4 C 0.114 3.886 5 N -0.252 5.252 6 C -0.030 4.030 7 C -0.203 4.203 8 C -0.095 4.095 9 C -0.034 4.034 10 N -0.283 5.283 11 C 0.269 3.731 12 O -0.338 6.338 13 C 0.288 3.712 14 O -0.440 6.440 15 N -0.294 5.294 16 C -0.018 4.018 17 C -0.212 4.212 18 C 0.129 3.871 19 C -0.557 4.557 20 H 0.063 0.937 21 C -0.175 4.175 22 N -0.561 5.561 23 Si 0.776 3.224 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.202 1.202 27 H 0.122 0.878 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.220 0.780 33 H 0.183 0.817 34 H 0.155 0.845 35 H 0.264 0.736 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.057 -13.563 -5.004 16.550 hybrid contribution 0.998 1.077 -0.542 1.565 sum -7.059 -12.486 -5.546 15.378 Atomic orbital electron populations 1.21849 0.91266 1.04313 1.03159 1.22824 0.96039 0.79672 1.02561 1.86215 1.15971 1.32667 1.87919 1.19557 0.85094 0.88099 0.95806 1.67436 1.07504 1.30856 1.19394 1.23034 0.88622 0.98482 0.92881 1.22251 1.02694 0.91826 1.03548 1.21834 0.91048 1.01761 0.94840 1.17904 0.90964 0.84821 1.09688 1.42820 1.22372 1.10164 1.52960 1.20481 0.88220 0.84266 0.80099 1.90955 1.20347 1.79673 1.42851 1.19805 0.86656 0.84464 0.80292 1.90640 1.21421 1.82328 1.49642 1.48293 1.20743 1.11576 1.48819 1.21700 0.92759 0.87234 1.00111 1.22033 0.99589 1.02894 0.96708 1.19437 0.77828 0.97956 0.91897 1.21315 0.92754 1.47281 0.94328 0.93666 1.25499 1.00280 0.95121 0.96613 1.70012 1.19752 1.50437 1.15914 0.85739 0.78655 0.78783 0.79220 1.19466 1.20672 1.20223 0.87812 0.92203 0.91601 0.91133 0.91787 0.78002 0.81676 0.84497 0.73625 0.89594 0.89786 0.88605 0.93399 0.93083 0.96015 0.94251 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.06 1.32 6.03 71.98 0.43 1.75 16 3 O -0.32 -9.01 9.67 -90.50 -0.87 -9.89 16 4 C 0.30 9.04 7.51 84.97 0.64 9.68 16 5 N -0.53 -14.11 9.21 -308.42 -2.84 -16.96 16 6 C 0.13 2.77 11.17 84.63 0.95 3.72 16 7 C -0.18 -4.67 10.10 22.35 0.23 -4.44 16 8 C -0.07 -2.29 8.83 22.57 0.20 -2.09 16 9 C 0.06 2.18 6.38 38.37 0.24 2.42 16 10 N -0.63 -23.00 5.20 -304.16 -1.58 -24.58 16 11 C 0.49 20.86 7.59 87.24 0.66 21.53 16 12 O -0.47 -22.83 9.44 -3.37 -0.03 -22.86 16 13 C 0.51 21.71 7.67 87.24 0.67 22.38 16 14 O -0.56 -23.50 16.04 -3.28 -0.05 -23.55 16 15 N -0.56 -24.41 2.47 -827.90 -2.05 -26.46 16 16 C 0.10 3.62 6.11 86.38 0.53 4.15 16 17 C -0.15 -4.54 10.24 71.98 0.74 -3.80 16 18 C 0.25 12.63 4.78 85.63 0.41 13.04 16 19 C -0.52 -28.21 7.78 25.60 0.20 -28.02 16 20 H 0.05 2.48 7.81 -2.91 -0.02 2.46 16 21 C 0.02 1.34 5.46 84.65 0.46 1.80 16 22 N -0.92 -53.41 13.29 21.45 0.28 -53.12 16 23 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 31 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 32 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.14 5.52 6.12 -2.91 -0.02 5.50 16 35 H 0.43 14.08 8.02 -92.71 -0.74 13.34 16 36 H 0.09 2.93 8.11 -2.39 -0.02 2.91 16 37 H 0.08 2.81 7.36 -2.39 -0.02 2.79 16 38 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.02 1.14 8.02 -2.39 -0.02 1.12 16 42 H 0.04 2.22 5.85 -2.39 -0.01 2.21 16 43 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -67.68 366.90 2.27 -65.41 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.29 Total: 25.80 kcal Atomic # 6 Polarization: 33.46 SS G_CDS: 7.09 Total: 40.55 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -6.19 Total: -121.12 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -0.96 Total: -56.30 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.68 2.27 -65.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124014882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.311 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds