Wall clock time and date at job start Tue Mar 31 2020 12:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47387 * 2 1 4 4 C 1.46510 * 119.99721 * 274.80840 * 3 2 1 5 5 C 1.50696 * 109.46961 * 263.67022 * 4 3 2 6 6 H 1.07997 * 119.99806 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99928 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00304 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99949 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47252 * 89.99881 * 9 7 5 11 11 H 1.48495 * 109.47191 * 209.99993 * 9 7 5 12 12 H 1.48499 * 109.47124 * 329.99680 * 9 7 5 13 13 C 1.34775 * 120.00452 * 94.80328 * 3 2 1 14 14 O 1.21369 * 119.99813 * 354.62447 * 13 3 2 15 15 C 1.49334 * 120.00065 * 174.61791 * 13 3 2 16 16 O 1.21388 * 120.00166 * 0.06970 * 15 13 3 17 17 N 1.34779 * 120.00011 * 180.02562 * 15 13 3 18 18 C 1.39905 * 120.00112 * 185.07578 * 17 15 13 19 19 C 1.39442 * 120.42797 * 327.08872 * 18 17 15 20 20 C 1.38286 * 118.41805 * 180.27751 * 19 18 17 21 21 C 1.38928 * 119.19682 * 0.02562 * 20 19 18 22 22 O 1.35733 * 119.60847 * 179.97438 * 21 20 19 23 23 C 1.42896 * 117.00487 * 180.02562 * 22 21 20 24 24 N 1.32225 * 120.79490 * 359.97438 * 21 20 19 25 25 C 1.31930 * 121.72270 * 0.02562 * 24 21 20 26 26 C 1.50701 * 119.63665 * 180.02562 * 25 24 21 27 27 H 1.09001 * 109.47098 * 59.99648 * 1 2 3 28 28 H 1.08994 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47150 * 300.00416 * 1 2 3 30 30 H 1.09001 * 109.47433 * 240.00120 * 2 1 3 31 31 H 1.08999 * 109.47261 * 119.99594 * 2 1 3 32 32 H 1.08997 * 109.46864 * 23.67394 * 4 3 2 33 33 H 1.09001 * 109.46941 * 143.67147 * 4 3 2 34 34 H 0.96998 * 119.99981 * 180.02562 * 8 7 5 35 35 H 0.97007 * 119.99535 * 5.06860 * 17 15 13 36 36 H 1.07993 * 120.79009 * 0.24976 * 19 18 17 37 37 H 1.08001 * 120.40359 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47474 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.47299 * 300.00031 * 23 22 21 40 40 H 1.09003 * 109.46845 * 59.99992 * 23 22 21 41 41 H 1.08994 * 109.47291 * 269.97437 * 26 25 24 42 42 H 1.08996 * 109.47128 * 29.97879 * 26 25 24 43 43 H 1.09004 * 109.46868 * 149.97460 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1623 2.1073 -1.2644 5 6 3.5897 2.0128 -1.7382 6 1 4.3170 1.4669 -1.1556 7 6 3.9671 2.6232 -2.9154 8 7 5.2129 2.5412 -3.3287 9 14 2.7092 3.5679 -3.9227 10 1 2.6880 4.9864 -3.4839 11 1 3.0744 3.5000 -5.3605 12 1 1.3651 2.9683 -3.7246 13 6 2.3352 1.9841 1.1630 14 8 2.1245 1.4192 2.2164 15 6 2.9455 3.3469 1.1556 16 8 3.1552 3.9124 0.1021 17 7 3.2629 3.9496 2.3187 18 6 3.7353 5.2664 2.3181 19 6 4.5091 5.7386 1.2585 20 6 4.9591 7.0454 1.3035 21 6 4.6285 7.8389 2.3949 22 8 5.0662 9.1226 2.4479 23 6 4.6941 9.8882 3.5957 24 7 3.8925 7.3586 3.3828 25 6 3.4454 6.1174 3.3748 26 6 2.6096 5.6189 4.5254 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5014 1.6691 -2.0122 33 1 1.8977 3.1540 -1.1144 34 1 5.4785 2.9710 -4.1568 35 1 3.1635 3.4702 3.1562 36 1 4.7515 5.0989 0.4230 37 1 5.5604 7.4444 0.4999 38 1 5.1082 10.8930 3.5121 39 1 3.6075 9.9466 3.6568 40 1 5.0833 9.4087 4.4939 41 1 3.2597 5.1883 5.2870 42 1 2.0487 6.4495 4.9537 43 1 1.9157 4.8581 4.1676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124066231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:30 Heat of formation + Delta-G solvation = -46.740958 kcal Electronic energy + Delta-G solvation = -27663.264324 eV Core-core repulsion = 23710.321369 eV Total energy + Delta-G solvation = -3952.942955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -41.06885 -40.08462 -38.57336 -37.54442 -35.90870 -34.43185 -32.98323 -32.62464 -30.75238 -30.42571 -28.32983 -27.76984 -26.65577 -24.87314 -23.18429 -22.69895 -22.25798 -21.25951 -19.48633 -18.12838 -17.66310 -17.12092 -16.91842 -16.46088 -16.05057 -16.01899 -15.30528 -15.02849 -14.46354 -14.29589 -14.05845 -13.94055 -13.91367 -13.51716 -13.24354 -13.07644 -12.57746 -12.50544 -12.50056 -12.36823 -12.19817 -12.00521 -11.82599 -11.77837 -11.24713 -11.07595 -10.80040 -10.71644 -10.47518 -10.35001 -10.22307 -9.74615 -9.56660 -9.39245 -8.76134 -8.52932 -8.02271 -7.76710 -6.10117 -4.07659 1.08297 1.34541 2.02134 2.71707 3.14220 3.28817 3.33594 3.37219 3.63421 3.87868 3.94071 4.17267 4.39210 4.73456 4.80363 5.08315 5.15596 5.22765 5.23751 5.29932 5.40340 5.44788 5.48191 5.53883 5.55673 5.59642 5.67308 5.82500 6.00580 6.04965 6.14037 6.16718 6.36014 6.40889 6.42995 6.72391 6.86789 7.05943 7.26317 7.37253 7.53024 7.82370 7.86272 8.14784 8.41346 8.54057 8.89769 9.50195 11.03018 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.004476 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.885544 B = 6253.572101 C = 8006.025682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.554 5.554 4 C 0.199 3.801 5 C -0.515 4.515 6 H 0.072 0.928 7 C 0.081 3.919 8 N -0.896 5.896 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.512 3.488 14 O -0.555 6.555 15 C 0.492 3.508 16 O -0.439 6.439 17 N -0.650 5.650 18 C 0.072 3.928 19 C -0.041 4.041 20 C -0.171 4.171 21 C 0.300 3.700 22 O -0.309 6.309 23 C 0.042 3.958 24 N -0.525 5.525 25 C 0.137 3.863 26 C -0.105 4.105 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.418 0.582 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 6.503 13.049 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.284 5.284 4 C 0.078 3.922 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.121 4.121 8 N -0.535 5.535 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.193 1.193 13 C 0.294 3.706 14 O -0.436 6.436 15 C 0.274 3.726 16 O -0.308 6.308 17 N -0.300 5.300 18 C -0.025 4.025 19 C -0.068 4.068 20 C -0.193 4.193 21 C 0.121 3.879 22 O -0.217 6.217 23 C -0.053 4.053 24 N -0.249 5.249 25 C -0.002 4.002 26 C -0.162 4.162 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.255 0.745 36 H 0.187 0.813 37 H 0.163 0.837 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.227 7.306 13.086 15.873 hybrid contribution -0.356 -0.089 -0.848 0.924 sum -5.583 7.217 12.238 15.265 Atomic orbital electron populations 1.22118 0.96172 1.01807 1.02191 1.21480 0.93893 0.82361 1.03506 1.47951 1.59339 1.13570 1.07520 1.20310 0.98848 0.93109 0.79900 1.21071 0.92960 1.34074 1.07270 0.90961 1.24712 0.94969 0.95349 0.97103 1.69885 1.16461 1.44357 1.22796 0.86911 0.82117 0.81479 0.79493 1.19789 1.21314 1.19254 1.19660 0.80084 0.86368 0.84499 1.90666 1.55747 1.66349 1.30797 1.20413 0.80545 0.87848 0.83800 1.90907 1.46960 1.63777 1.29111 1.43054 1.64746 1.11634 1.10553 1.18359 1.00126 0.86053 0.98009 1.21904 0.91198 0.95178 0.98556 1.21038 1.05608 0.93646 0.98960 1.19740 0.92285 0.85189 0.90708 1.86248 1.71247 1.19977 1.44182 1.22789 1.00991 0.94367 0.87191 1.67024 1.14952 1.15159 1.27761 1.20619 0.96374 0.87312 0.95853 1.20702 0.98639 1.01905 0.94985 0.92415 0.91793 0.92587 0.89652 0.90169 0.95123 0.92678 0.92607 0.74467 0.81280 0.83734 0.88963 0.92525 0.92519 0.90156 0.90158 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 10.24 37.15 0.38 -1.88 16 2 C 0.11 1.82 6.11 -4.04 -0.02 1.79 16 3 N -0.55 -11.04 2.47 -175.61 -0.43 -11.47 16 4 C 0.20 4.49 3.85 -5.19 -0.02 4.47 16 5 C -0.52 -13.78 8.33 -34.44 -0.29 -14.07 16 6 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 8 N -0.90 -26.57 13.96 55.43 0.77 -25.80 16 9 Si 0.87 20.96 27.47 -169.99 -4.67 16.29 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.51 10.00 7.67 -11.64 -0.09 9.92 16 14 O -0.55 -10.70 16.04 5.48 0.09 -10.61 16 15 C 0.49 9.44 7.59 -11.64 -0.09 9.35 16 16 O -0.44 -9.71 9.45 5.46 0.05 -9.66 16 17 N -0.65 -10.16 4.78 -10.18 -0.05 -10.21 16 18 C 0.07 1.13 6.33 -83.54 -0.53 0.60 16 19 C -0.04 -0.70 8.83 -39.12 -0.35 -1.05 16 20 C -0.17 -2.65 10.03 -39.31 -0.39 -3.05 16 21 C 0.30 4.51 7.49 -17.13 -0.13 4.38 16 22 O -0.31 -4.21 10.48 -18.91 -0.20 -4.41 16 23 C 0.04 0.42 10.38 101.05 1.05 1.47 16 24 N -0.52 -7.62 9.11 -9.38 -0.09 -7.71 16 25 C 0.14 1.91 6.80 -82.37 -0.56 1.35 16 26 C -0.10 -1.07 9.63 36.01 0.35 -0.72 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 31 H 0.08 1.29 7.36 -51.93 -0.38 0.91 16 32 H 0.03 0.68 7.08 -51.93 -0.37 0.31 16 33 H 0.06 1.29 5.28 -51.93 -0.27 1.02 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.42 5.55 7.25 -40.82 -0.30 5.26 16 36 H 0.17 3.29 6.14 -52.49 -0.32 2.97 16 37 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 40 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.76 7.13 -51.93 -0.37 0.39 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -31.75 361.08 -5.69 -37.45 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.82 Total: 5.98 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: -0.79 Total: 14.71 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.20 Total: -55.19 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.06 Total: -24.68 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.75 -5.69 -37.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124066231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.294 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds