Wall clock time and date at job start Tue Mar 31 2020 12:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47387 * 2 1 4 4 C 1.46510 * 119.99721 * 274.80840 * 3 2 1 5 5 C 1.50696 * 109.46961 * 263.67022 * 4 3 2 6 6 H 1.07997 * 119.99806 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99928 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00304 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99949 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47252 * 89.99881 * 9 7 5 11 11 H 1.48495 * 109.47191 * 209.99993 * 9 7 5 12 12 H 1.48499 * 109.47124 * 329.99680 * 9 7 5 13 13 C 1.34775 * 120.00452 * 94.80328 * 3 2 1 14 14 O 1.21369 * 119.99813 * 354.62447 * 13 3 2 15 15 C 1.49334 * 120.00065 * 174.61791 * 13 3 2 16 16 O 1.21388 * 120.00166 * 0.06970 * 15 13 3 17 17 N 1.34779 * 120.00011 * 180.02562 * 15 13 3 18 18 C 1.39905 * 120.00112 * 185.07578 * 17 15 13 19 19 C 1.39442 * 120.42797 * 327.08872 * 18 17 15 20 20 C 1.38286 * 118.41805 * 180.27751 * 19 18 17 21 21 C 1.38928 * 119.19682 * 0.02562 * 20 19 18 22 22 O 1.35733 * 119.60847 * 179.97438 * 21 20 19 23 23 C 1.42896 * 117.00487 * 180.02562 * 22 21 20 24 24 N 1.32225 * 120.79490 * 359.97438 * 21 20 19 25 25 C 1.31930 * 121.72270 * 0.02562 * 24 21 20 26 26 C 1.50701 * 119.63665 * 180.02562 * 25 24 21 27 27 H 1.09001 * 109.47098 * 59.99648 * 1 2 3 28 28 H 1.08994 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47150 * 300.00416 * 1 2 3 30 30 H 1.09001 * 109.47433 * 240.00120 * 2 1 3 31 31 H 1.08999 * 109.47261 * 119.99594 * 2 1 3 32 32 H 1.08997 * 109.46864 * 23.67394 * 4 3 2 33 33 H 1.09001 * 109.46941 * 143.67147 * 4 3 2 34 34 H 0.96998 * 119.99981 * 180.02562 * 8 7 5 35 35 H 0.97007 * 119.99535 * 5.06860 * 17 15 13 36 36 H 1.07993 * 120.79009 * 0.24976 * 19 18 17 37 37 H 1.08001 * 120.40359 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47474 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.47299 * 300.00031 * 23 22 21 40 40 H 1.09003 * 109.46845 * 59.99992 * 23 22 21 41 41 H 1.08994 * 109.47291 * 269.97437 * 26 25 24 42 42 H 1.08996 * 109.47128 * 29.97879 * 26 25 24 43 43 H 1.09004 * 109.46868 * 149.97460 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1623 2.1073 -1.2644 5 6 3.5897 2.0128 -1.7382 6 1 4.3170 1.4669 -1.1556 7 6 3.9671 2.6232 -2.9154 8 7 5.2129 2.5412 -3.3287 9 14 2.7092 3.5679 -3.9227 10 1 2.6880 4.9864 -3.4839 11 1 3.0744 3.5000 -5.3605 12 1 1.3651 2.9683 -3.7246 13 6 2.3352 1.9841 1.1630 14 8 2.1245 1.4192 2.2164 15 6 2.9455 3.3469 1.1556 16 8 3.1552 3.9124 0.1021 17 7 3.2629 3.9496 2.3187 18 6 3.7353 5.2664 2.3181 19 6 4.5091 5.7386 1.2585 20 6 4.9591 7.0454 1.3035 21 6 4.6285 7.8389 2.3949 22 8 5.0662 9.1226 2.4479 23 6 4.6941 9.8882 3.5957 24 7 3.8925 7.3586 3.3828 25 6 3.4454 6.1174 3.3748 26 6 2.6096 5.6189 4.5254 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5014 1.6691 -2.0122 33 1 1.8977 3.1540 -1.1144 34 1 5.4785 2.9710 -4.1568 35 1 3.1635 3.4702 3.1562 36 1 4.7515 5.0989 0.4230 37 1 5.5604 7.4444 0.4999 38 1 5.1082 10.8930 3.5121 39 1 3.6075 9.9466 3.6568 40 1 5.0833 9.4087 4.4939 41 1 3.2597 5.1883 5.2870 42 1 2.0487 6.4495 4.9537 43 1 1.9157 4.8581 4.1676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124066231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:28 Heat of formation + Delta-G solvation = -69.927535 kcal Electronic energy + Delta-G solvation = -27664.269769 eV Core-core repulsion = 23710.321369 eV Total energy + Delta-G solvation = -3953.948401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.38570 -41.44334 -39.90431 -38.83036 -37.45041 -35.80495 -34.64466 -34.12263 -32.20634 -31.60838 -29.62858 -29.25986 -27.72238 -26.18966 -24.62267 -24.37299 -23.41804 -22.61335 -20.90182 -19.35351 -19.11804 -18.99287 -18.38219 -17.71285 -17.54180 -17.09748 -16.85121 -16.53183 -16.05796 -15.51526 -15.38123 -15.31157 -15.02154 -14.81319 -14.72010 -14.44331 -14.33285 -13.79972 -13.65484 -13.49203 -13.40835 -13.22530 -13.19728 -12.72521 -12.65485 -12.59004 -12.34912 -12.21660 -12.07931 -11.86643 -11.65178 -11.53646 -10.96779 -10.74006 -10.67821 -10.17929 -9.64450 -8.99159 -8.24258 -6.25207 -0.15325 0.08475 0.54468 1.30489 1.38283 1.41917 1.46856 2.09037 2.16479 2.37847 2.50220 2.63060 3.12168 3.13601 3.31188 3.62521 3.90219 4.05724 4.15648 4.34226 4.42975 4.45864 4.47020 4.49889 4.54923 4.68951 4.69444 4.73449 4.79436 4.86185 4.92273 4.96168 5.01728 5.10753 5.19912 5.32180 5.45042 5.49112 5.53379 5.99945 6.10189 6.18531 6.37723 6.68429 6.71287 6.73502 7.00688 7.36277 8.92558 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.004476 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.885544 B = 6253.572101 C = 8006.025682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.562 5.562 4 C 0.211 3.789 5 C -0.505 4.505 6 H 0.028 0.972 7 C 0.025 3.975 8 N -0.946 5.946 9 Si 0.934 3.066 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.238 1.238 13 C 0.510 3.490 14 O -0.551 6.551 15 C 0.490 3.510 16 O -0.477 6.477 17 N -0.630 5.630 18 C 0.053 3.947 19 C -0.055 4.055 20 C -0.183 4.183 21 C 0.302 3.698 22 O -0.318 6.318 23 C 0.036 3.964 24 N -0.524 5.524 25 C 0.151 3.849 26 C -0.104 4.104 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.430 0.570 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 7.220 14.688 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.292 5.292 4 C 0.090 3.910 5 C -0.544 4.544 6 H 0.046 0.954 7 C -0.173 4.173 8 N -0.587 5.587 9 Si 0.758 3.242 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.161 1.161 13 C 0.292 3.708 14 O -0.432 6.432 15 C 0.272 3.728 16 O -0.348 6.348 17 N -0.280 5.280 18 C -0.044 4.044 19 C -0.083 4.083 20 C -0.204 4.204 21 C 0.123 3.877 22 O -0.225 6.225 23 C -0.059 4.059 24 N -0.248 5.248 25 C 0.012 3.988 26 C -0.161 4.161 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.270 0.730 36 H 0.155 0.845 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.513 8.009 14.790 18.421 hybrid contribution 0.440 -0.276 -1.176 1.286 sum -7.073 7.733 13.614 17.180 Atomic orbital electron populations 1.22044 0.93549 1.03714 1.01919 1.21742 0.96022 0.80508 1.03644 1.47999 1.59758 1.14769 1.06654 1.19990 0.96132 0.93589 0.81319 1.21197 0.94295 1.32500 1.06410 0.95389 1.25522 0.96749 0.96463 0.98541 1.70034 1.18802 1.46272 1.23631 0.85929 0.80994 0.79627 0.77662 1.20403 1.21044 1.16110 1.19754 0.79969 0.86554 0.84550 1.90654 1.55645 1.66397 1.30471 1.20500 0.80339 0.87755 0.84254 1.90898 1.48872 1.64572 1.30496 1.42840 1.63442 1.11679 1.10052 1.18447 1.01044 0.86280 0.98639 1.21676 0.92552 0.95630 0.98406 1.21073 1.06165 0.93328 0.99849 1.19833 0.91721 0.85785 0.90367 1.86246 1.71085 1.19320 1.45841 1.23094 1.01404 0.95268 0.86106 1.67181 1.14995 1.15238 1.27423 1.21179 0.95176 0.86616 0.95829 1.20851 0.98636 1.02604 0.93970 0.92484 0.88804 0.92968 0.89720 0.89897 0.93579 0.92936 0.92691 0.73004 0.84470 0.83129 0.85936 0.92390 0.92143 0.87827 0.88779 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 10.24 71.98 0.74 -3.11 16 2 C 0.10 3.24 6.11 86.38 0.53 3.77 16 3 N -0.56 -22.15 2.47 -827.85 -2.05 -24.20 16 4 C 0.21 9.49 3.85 85.63 0.33 9.82 16 5 C -0.51 -27.83 8.33 25.60 0.21 -27.61 16 6 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 7 C 0.03 1.42 5.47 84.65 0.46 1.89 16 8 N -0.95 -58.32 13.96 21.45 0.30 -58.02 16 9 Si 0.93 43.45 27.47 68.60 1.88 45.33 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 13 C 0.51 19.77 7.67 87.23 0.67 20.44 16 14 O -0.55 -20.60 16.04 -3.30 -0.05 -20.65 16 15 C 0.49 19.03 7.59 87.23 0.66 19.70 16 16 O -0.48 -21.83 9.45 -3.37 -0.03 -21.86 16 17 N -0.63 -19.52 4.78 -304.46 -1.46 -20.97 16 18 C 0.05 1.64 6.33 38.26 0.24 1.89 16 19 C -0.06 -1.97 8.83 22.57 0.20 -1.77 16 20 C -0.18 -5.80 10.03 22.45 0.23 -5.58 16 21 C 0.30 8.86 7.49 84.80 0.63 9.49 16 22 O -0.32 -8.23 10.48 -90.56 -0.95 -9.17 16 23 C 0.04 0.63 10.38 113.37 1.18 1.80 16 24 N -0.52 -14.35 9.11 -296.44 -2.70 -17.05 16 25 C 0.15 3.96 6.80 42.66 0.29 4.25 16 26 C -0.10 -1.80 9.63 71.24 0.69 -1.11 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.08 2.67 8.11 -2.39 -0.02 2.66 16 31 H 0.08 2.57 7.36 -2.39 -0.02 2.55 16 32 H 0.05 1.95 7.08 -2.39 -0.02 1.93 16 33 H 0.05 2.45 5.28 -2.39 -0.01 2.44 16 34 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.43 10.89 7.25 -92.70 -0.67 10.22 16 36 H 0.14 5.79 6.14 -2.91 -0.02 5.77 16 37 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 40 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.39 7.13 -2.38 -0.02 1.37 16 Total: -1.00 -70.72 361.08 2.32 -68.40 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.32 Total: 24.31 kcal Atomic # 6 Polarization: 26.82 SS G_CDS: 7.06 Total: 33.88 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -5.91 Total: -120.24 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -1.03 Total: -51.68 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Total: -70.72 2.32 -68.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124066231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.526 kcal (2) G-P(sol) polarization free energy of solvation -70.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds