Wall clock time and date at job start Tue Mar 31 2020 12:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47004 * 2 1 4 4 C 1.46494 * 119.99817 * 274.74276 * 3 2 1 5 5 C 1.50698 * 109.46994 * 262.41885 * 4 3 2 6 6 H 1.08000 * 119.99954 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99767 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99496 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00241 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47603 * 89.99493 * 9 7 5 11 11 H 1.48493 * 109.47056 * 210.00229 * 9 7 5 12 12 H 1.48508 * 109.46839 * 329.99355 * 9 7 5 13 13 C 1.34773 * 119.99736 * 94.74065 * 3 2 1 14 14 O 1.21364 * 120.00568 * 4.27307 * 13 3 2 15 15 C 1.49324 * 119.99621 * 184.27161 * 13 3 2 16 16 O 1.21399 * 119.99939 * 352.46499 * 15 13 3 17 17 N 1.34778 * 119.99598 * 172.47278 * 15 13 3 18 18 C 1.40412 * 119.99639 * 185.10547 * 17 15 13 19 19 C 1.41865 * 128.07442 * 317.65020 * 18 17 15 20 20 C 1.50695 * 126.81683 * 359.97438 * 19 18 17 21 21 N 1.30143 * 106.36578 * 180.25968 * 19 18 17 22 22 O 1.20891 * 111.78563 * 359.56922 * 21 19 18 23 23 C 1.34245 * 111.65682 * 0.44784 * 22 21 19 24 24 C 1.50695 * 126.83180 * 179.71115 * 23 22 21 25 25 C 1.53006 * 117.50025 * 8.64609 * 24 23 22 26 26 C 1.52995 * 60.00223 * 252.51163 * 25 24 23 27 27 H 1.08996 * 109.47391 * 60.00442 * 1 2 3 28 28 H 1.09004 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47580 * 300.00156 * 1 2 3 30 30 H 1.08992 * 109.47165 * 239.99706 * 2 1 3 31 31 H 1.09003 * 109.46835 * 119.99889 * 2 1 3 32 32 H 1.09003 * 109.47479 * 22.42049 * 4 3 2 33 33 H 1.09003 * 109.46915 * 142.41907 * 4 3 2 34 34 H 0.97001 * 119.99378 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00704 * 5.10307 * 17 15 13 36 36 H 1.09004 * 109.46776 * 93.91408 * 20 19 18 37 37 H 1.08999 * 109.47589 * 213.91197 * 20 19 18 38 38 H 1.08997 * 109.47409 * 333.91687 * 20 19 18 39 39 H 1.08997 * 115.55449 * 154.35509 * 24 23 22 40 40 H 1.09008 * 117.49652 * 0.02562 * 25 24 23 41 41 H 1.09000 * 117.50435 * 145.01745 * 25 24 23 42 42 H 1.08998 * 117.49530 * 252.51193 * 26 25 24 43 43 H 1.09001 * 117.52012 * 107.47961 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1635 2.1068 -1.2644 5 6 3.5981 2.0382 -1.7209 6 1 4.3284 1.5069 -1.1287 7 6 3.9779 2.6528 -2.8953 8 7 5.2297 2.5925 -3.2940 9 14 2.7145 3.5711 -3.9199 10 1 2.6612 4.9900 -3.4851 11 1 3.0981 3.5066 -5.3530 12 1 1.3797 2.9466 -3.7363 13 6 2.3339 1.9844 1.1632 14 8 2.2878 1.3598 2.2028 15 6 2.7402 3.4213 1.1729 16 8 2.9190 4.0086 0.1256 17 7 2.9085 4.0660 2.3445 18 6 3.1852 5.4425 2.3547 19 6 4.0698 6.1634 1.5118 20 6 4.9205 5.5999 0.4029 21 7 4.0054 7.4068 1.8905 22 8 3.2311 7.5574 2.8066 23 6 2.6681 6.3958 3.1754 24 6 1.6634 6.1892 4.2794 25 6 1.0734 7.4367 4.9403 26 6 2.0844 6.5747 5.6990 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5200 1.6544 -2.0189 33 1 1.8775 3.1487 -1.1203 34 1 5.4970 3.0252 -4.1199 35 1 2.8384 3.5792 3.1805 36 1 4.3871 5.6864 -0.5438 37 1 5.8564 6.1556 0.3446 38 1 5.1332 4.5503 0.6055 39 1 1.0111 5.3235 4.1655 40 1 1.4117 8.4069 4.5762 41 1 0.0327 7.3919 5.2611 42 1 1.7087 5.9627 6.5189 43 1 3.0882 6.9773 5.8344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124074835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:51 Heat of formation + Delta-G solvation = 38.640183 kcal Electronic energy + Delta-G solvation = -28157.852700 eV Core-core repulsion = 24208.612149 eV Total energy + Delta-G solvation = -3949.240551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.82645 -40.37999 -38.28421 -37.57415 -36.06977 -35.06277 -33.34523 -32.63552 -30.75653 -30.66852 -28.26191 -27.76935 -25.41834 -23.79793 -23.04539 -22.71489 -22.58565 -21.13400 -20.07158 -19.07208 -17.72805 -17.59132 -17.06839 -17.05001 -16.50357 -16.00662 -15.56479 -15.26442 -15.01991 -14.25330 -13.98259 -13.97105 -13.49904 -13.23407 -13.09372 -12.81654 -12.57719 -12.41612 -12.22833 -12.11683 -11.93332 -11.85133 -11.80571 -11.45034 -11.34109 -11.08245 -10.82475 -10.79118 -10.69840 -10.46257 -10.30308 -10.19700 -9.56389 -9.38795 -8.88468 -8.54178 -8.39999 -7.97056 -6.10551 -4.08582 1.30699 1.91681 2.34791 2.56272 3.13435 3.28643 3.33445 3.37196 3.56548 3.70604 3.92724 4.16935 4.38820 4.48393 4.54790 4.65655 4.72102 4.94971 5.23154 5.24139 5.34340 5.34582 5.39480 5.53639 5.60201 5.65019 5.72373 5.81303 5.84351 6.03977 6.09413 6.12986 6.21616 6.38920 6.41129 6.48698 6.70762 6.90500 7.06566 7.31355 7.52743 7.82597 8.14286 8.38118 8.40518 8.53036 8.90100 9.49806 11.02394 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.004928 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.338506 B = 5680.709470 C = 7184.768807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.553 5.553 4 C 0.193 3.807 5 C -0.518 4.518 6 H 0.073 0.927 7 C 0.082 3.918 8 N -0.895 5.895 9 Si 0.872 3.128 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.515 3.485 14 O -0.555 6.555 15 C 0.495 3.505 16 O -0.439 6.439 17 N -0.629 5.629 18 C 0.050 3.950 19 C 0.046 3.954 20 C -0.063 4.063 21 N -0.362 5.362 22 O 0.101 5.899 23 C -0.031 4.031 24 C -0.081 4.081 25 C -0.164 4.164 26 C -0.163 4.163 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.063 0.937 34 H 0.264 0.736 35 H 0.420 0.580 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.973 4.367 14.574 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.015 4.015 3 N -0.283 5.283 4 C 0.073 3.927 5 C -0.557 4.557 6 H 0.091 0.909 7 C -0.120 4.120 8 N -0.534 5.534 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.193 1.193 13 C 0.297 3.703 14 O -0.436 6.436 15 C 0.277 3.723 16 O -0.307 6.307 17 N -0.283 5.283 18 C -0.049 4.049 19 C -0.114 4.114 20 C -0.121 4.121 21 N -0.070 5.070 22 O 0.039 5.961 23 C -0.097 4.097 24 C -0.100 4.100 25 C -0.201 4.201 26 C -0.200 4.200 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.153 0.847 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.172 5.602 13.672 16.885 hybrid contribution -0.726 -0.536 -0.340 0.964 sum -8.898 5.067 13.333 16.811 Atomic orbital electron populations 1.22129 0.96181 1.01856 1.02118 1.21488 0.93729 0.82530 1.03713 1.47929 1.59393 1.13517 1.07426 1.20431 0.98909 0.93612 0.79777 1.21086 0.92350 1.34705 1.07533 0.90919 1.24701 0.94938 0.95306 0.97082 1.69887 1.16090 1.44212 1.23176 0.86929 0.82195 0.81383 0.79606 1.19790 1.21330 1.19259 1.19551 0.79285 0.86996 0.84443 1.90667 1.54957 1.65974 1.32001 1.20446 0.79597 0.88637 0.83593 1.90909 1.42712 1.67276 1.29757 1.42363 1.71363 1.04389 1.10161 1.17900 1.00350 0.85975 1.00637 1.23656 0.98533 0.88934 1.00311 1.20212 0.96596 1.00746 0.94522 1.73807 1.10621 1.19302 1.03275 1.84806 1.43043 1.30039 1.38196 1.22856 1.00242 0.84882 1.01718 1.20324 0.98573 1.01703 0.89367 1.23044 0.99349 0.95080 1.02651 1.23122 1.00733 1.03180 0.92983 0.92378 0.91704 0.92751 0.89657 0.89948 0.95238 0.91956 0.92604 0.74197 0.88620 0.91583 0.89899 0.84738 0.87775 0.87699 0.87558 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.77 6.18 -4.04 -0.02 1.75 16 3 N -0.55 -10.98 2.48 -175.62 -0.44 -11.41 16 4 C 0.19 4.35 3.86 -5.20 -0.02 4.33 16 5 C -0.52 -13.84 8.78 -34.44 -0.30 -14.14 16 6 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.90 -26.42 13.96 55.43 0.77 -25.65 16 9 Si 0.87 21.00 27.47 -169.99 -4.67 16.34 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.52 10.07 7.65 -11.65 -0.09 9.98 16 14 O -0.56 -10.79 15.98 5.48 0.09 -10.70 16 15 C 0.50 9.46 7.28 -11.64 -0.08 9.37 16 16 O -0.44 -9.60 8.70 5.45 0.05 -9.56 16 17 N -0.63 -9.89 5.45 -10.09 -0.05 -9.95 16 18 C 0.05 0.80 6.63 -83.34 -0.55 0.25 16 19 C 0.05 0.83 6.97 -81.92 -0.57 0.26 16 20 C -0.06 -1.20 8.56 36.00 0.31 -0.89 16 21 N -0.36 -6.25 12.06 33.58 0.40 -5.85 16 22 O 0.10 1.51 11.00 16.64 0.18 1.69 16 23 C -0.03 -0.41 6.97 -35.11 -0.24 -0.66 16 24 C -0.08 -0.77 6.27 -91.77 -0.58 -1.35 16 25 C -0.16 -1.25 10.18 -26.73 -0.27 -1.52 16 26 C -0.16 -1.20 10.23 -26.73 -0.27 -1.48 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 31 H 0.08 1.33 7.23 -51.93 -0.38 0.96 16 32 H 0.03 0.65 7.07 -51.93 -0.37 0.29 16 33 H 0.06 1.46 4.91 -51.93 -0.26 1.21 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.42 5.60 8.31 -40.82 -0.34 5.26 16 36 H 0.10 2.01 7.48 -51.93 -0.39 1.62 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.67 7.21 -51.93 -0.37 1.29 16 39 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.10 0.83 8.02 -51.92 -0.42 0.42 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -31.37 362.98 -6.52 -37.90 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.91 Total: 5.47 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -2.42 Total: 6.25 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.69 Total: -52.85 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.32 Total: -18.57 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.37 -6.52 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124074835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.537 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds