Wall clock time and date at job start Tue Mar 31 2020 12:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47004 * 2 1 4 4 C 1.46494 * 119.99817 * 274.74276 * 3 2 1 5 5 C 1.50698 * 109.46994 * 262.41885 * 4 3 2 6 6 H 1.08000 * 119.99954 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99767 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99496 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00241 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47603 * 89.99493 * 9 7 5 11 11 H 1.48493 * 109.47056 * 210.00229 * 9 7 5 12 12 H 1.48508 * 109.46839 * 329.99355 * 9 7 5 13 13 C 1.34773 * 119.99736 * 94.74065 * 3 2 1 14 14 O 1.21364 * 120.00568 * 4.27307 * 13 3 2 15 15 C 1.49324 * 119.99621 * 184.27161 * 13 3 2 16 16 O 1.21399 * 119.99939 * 352.46499 * 15 13 3 17 17 N 1.34778 * 119.99598 * 172.47278 * 15 13 3 18 18 C 1.40412 * 119.99639 * 185.10547 * 17 15 13 19 19 C 1.41865 * 128.07442 * 317.65020 * 18 17 15 20 20 C 1.50695 * 126.81683 * 359.97438 * 19 18 17 21 21 N 1.30143 * 106.36578 * 180.25968 * 19 18 17 22 22 O 1.20891 * 111.78563 * 359.56922 * 21 19 18 23 23 C 1.34245 * 111.65682 * 0.44784 * 22 21 19 24 24 C 1.50695 * 126.83180 * 179.71115 * 23 22 21 25 25 C 1.53006 * 117.50025 * 8.64609 * 24 23 22 26 26 C 1.52995 * 60.00223 * 252.51163 * 25 24 23 27 27 H 1.08996 * 109.47391 * 60.00442 * 1 2 3 28 28 H 1.09004 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47580 * 300.00156 * 1 2 3 30 30 H 1.08992 * 109.47165 * 239.99706 * 2 1 3 31 31 H 1.09003 * 109.46835 * 119.99889 * 2 1 3 32 32 H 1.09003 * 109.47479 * 22.42049 * 4 3 2 33 33 H 1.09003 * 109.46915 * 142.41907 * 4 3 2 34 34 H 0.97001 * 119.99378 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00704 * 5.10307 * 17 15 13 36 36 H 1.09004 * 109.46776 * 93.91408 * 20 19 18 37 37 H 1.08999 * 109.47589 * 213.91197 * 20 19 18 38 38 H 1.08997 * 109.47409 * 333.91687 * 20 19 18 39 39 H 1.08997 * 115.55449 * 154.35509 * 24 23 22 40 40 H 1.09008 * 117.49652 * 0.02562 * 25 24 23 41 41 H 1.09000 * 117.50435 * 145.01745 * 25 24 23 42 42 H 1.08998 * 117.49530 * 252.51193 * 26 25 24 43 43 H 1.09001 * 117.52012 * 107.47961 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1635 2.1068 -1.2644 5 6 3.5981 2.0382 -1.7209 6 1 4.3284 1.5069 -1.1287 7 6 3.9779 2.6528 -2.8953 8 7 5.2297 2.5925 -3.2940 9 14 2.7145 3.5711 -3.9199 10 1 2.6612 4.9900 -3.4851 11 1 3.0981 3.5066 -5.3530 12 1 1.3797 2.9466 -3.7363 13 6 2.3339 1.9844 1.1632 14 8 2.2878 1.3598 2.2028 15 6 2.7402 3.4213 1.1729 16 8 2.9190 4.0086 0.1256 17 7 2.9085 4.0660 2.3445 18 6 3.1852 5.4425 2.3547 19 6 4.0698 6.1634 1.5118 20 6 4.9205 5.5999 0.4029 21 7 4.0054 7.4068 1.8905 22 8 3.2311 7.5574 2.8066 23 6 2.6681 6.3958 3.1754 24 6 1.6634 6.1892 4.2794 25 6 1.0734 7.4367 4.9403 26 6 2.0844 6.5747 5.6990 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5200 1.6544 -2.0189 33 1 1.8775 3.1487 -1.1203 34 1 5.4970 3.0252 -4.1199 35 1 2.8384 3.5792 3.1805 36 1 4.3871 5.6864 -0.5438 37 1 5.8564 6.1556 0.3446 38 1 5.1332 4.5503 0.6055 39 1 1.0111 5.3235 4.1655 40 1 1.4117 8.4069 4.5762 41 1 0.0327 7.3919 5.2611 42 1 1.7087 5.9627 6.5189 43 1 3.0882 6.9773 5.8344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124074835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:47 Heat of formation + Delta-G solvation = 18.443651 kcal Electronic energy + Delta-G solvation = -28158.728488 eV Core-core repulsion = 24208.612149 eV Total energy + Delta-G solvation = -3950.116338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -46.12577 -41.90049 -39.77013 -38.33456 -37.58698 -36.48544 -34.70821 -34.65179 -32.20419 -31.90039 -29.72294 -29.62116 -26.82392 -24.76541 -24.60348 -24.28290 -23.23611 -22.52095 -21.32767 -20.42877 -19.14039 -18.98780 -18.90744 -18.56472 -17.80928 -17.18062 -16.99696 -16.63955 -16.40462 -15.99034 -15.42608 -15.13712 -14.87312 -14.72944 -14.39189 -14.35756 -14.24684 -13.91684 -13.72958 -13.55816 -13.23444 -13.18390 -12.71247 -12.63367 -12.59180 -12.43825 -12.33206 -12.20100 -12.07643 -11.87831 -11.66882 -11.59982 -11.34426 -10.79046 -10.66230 -10.34281 -9.68585 -9.55387 -8.25089 -6.26283 0.08093 0.45952 0.95298 1.23575 1.35914 1.40611 1.44953 1.95816 2.16511 2.36503 2.51385 2.89152 3.08931 3.12714 3.24886 3.32859 3.66830 3.88376 4.04521 4.11535 4.14995 4.33562 4.38580 4.49440 4.50564 4.55606 4.66021 4.69099 4.82643 4.89146 4.91819 4.98834 5.02210 5.11004 5.13458 5.25085 5.27715 5.33155 5.45794 5.52618 5.95575 6.10123 6.36667 6.70724 6.71222 6.99040 7.13003 7.35576 8.91423 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.004928 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.338506 B = 5680.709470 C = 7184.768807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.560 5.560 4 C 0.205 3.795 5 C -0.509 4.509 6 H 0.028 0.972 7 C 0.029 3.971 8 N -0.943 5.943 9 Si 0.931 3.069 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.238 1.238 13 C 0.513 3.487 14 O -0.554 6.554 15 C 0.494 3.506 16 O -0.474 6.474 17 N -0.609 5.609 18 C 0.021 3.979 19 C 0.023 3.977 20 C -0.050 4.050 21 N -0.377 5.377 22 O 0.111 5.889 23 C 0.004 3.996 24 C -0.106 4.106 25 C -0.153 4.153 26 C -0.146 4.146 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.264 0.736 35 H 0.432 0.568 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.148 0.852 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 4.726 16.550 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.290 5.290 4 C 0.084 3.916 5 C -0.547 4.547 6 H 0.046 0.954 7 C -0.169 4.169 8 N -0.584 5.584 9 Si 0.755 3.245 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.161 1.161 13 C 0.295 3.705 14 O -0.435 6.435 15 C 0.276 3.724 16 O -0.345 6.345 17 N -0.262 5.262 18 C -0.078 4.078 19 C -0.136 4.136 20 C -0.108 4.108 21 N -0.084 5.084 22 O 0.048 5.952 23 C -0.063 4.063 24 C -0.125 4.125 25 C -0.190 4.190 26 C -0.183 4.183 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.273 0.727 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.166 0.834 40 H 0.117 0.883 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.131 5.933 15.700 20.139 hybrid contribution 0.227 -0.636 -0.750 1.010 sum -10.904 5.297 14.949 19.247 Atomic orbital electron populations 1.22055 0.93396 1.03796 1.01956 1.21752 0.95985 0.80648 1.03745 1.47975 1.59755 1.14729 1.06541 1.20105 0.96137 0.94146 0.81214 1.21206 0.93721 1.33165 1.06638 0.95351 1.25473 0.96652 0.96289 0.98510 1.70032 1.18353 1.46036 1.23984 0.85971 0.81120 0.79608 0.77768 1.20565 1.21068 1.16139 1.19657 0.79112 0.87244 0.84475 1.90654 1.54933 1.66083 1.31788 1.20492 0.79305 0.88548 0.84054 1.90898 1.44728 1.67801 1.31062 1.42086 1.70009 1.04443 1.09689 1.17929 1.01639 0.86253 1.01935 1.23573 0.99502 0.89752 1.00786 1.19926 0.97137 0.99765 0.93941 1.73779 1.11547 1.19010 1.04072 1.84785 1.42428 1.30590 1.37389 1.23515 0.98674 0.83319 1.00790 1.20615 0.98793 1.03737 0.89360 1.23191 1.00778 0.93787 1.01269 1.23254 1.00730 1.02599 0.91760 0.92480 0.88718 0.92885 0.89791 0.89812 0.93766 0.92169 0.92691 0.72744 0.91321 0.90463 0.91956 0.83432 0.88274 0.85337 0.85058 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 10.24 71.98 0.74 -3.01 16 2 C 0.10 3.16 6.18 86.38 0.53 3.70 16 3 N -0.56 -22.03 2.48 -827.90 -2.05 -24.08 16 4 C 0.21 9.23 3.86 85.63 0.33 9.56 16 5 C -0.51 -27.97 8.78 25.60 0.22 -27.74 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 7 C 0.03 1.64 5.47 84.66 0.46 2.10 16 8 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 9 Si 0.93 43.61 27.47 68.60 1.88 45.50 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 13 C 0.51 19.93 7.65 87.23 0.67 20.60 16 14 O -0.55 -20.98 15.98 -3.29 -0.05 -21.04 16 15 C 0.49 19.07 7.28 87.23 0.63 19.71 16 16 O -0.47 -21.39 8.70 -3.40 -0.03 -21.42 16 17 N -0.61 -18.93 5.45 -304.16 -1.66 -20.59 16 18 C 0.02 0.66 6.63 38.14 0.25 0.91 16 19 C 0.02 0.86 6.97 43.70 0.30 1.16 16 20 C -0.05 -2.01 8.56 71.23 0.61 -1.40 16 21 N -0.38 -13.01 12.06 -48.89 -0.59 -13.60 16 22 O 0.11 3.19 11.00 69.72 0.77 3.96 16 23 C 0.00 0.09 6.97 25.16 0.18 0.27 16 24 C -0.11 -1.71 6.27 -11.54 -0.07 -1.78 16 25 C -0.15 -1.75 10.18 30.59 0.31 -1.44 16 26 C -0.15 -1.61 10.23 30.59 0.31 -1.30 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.09 1.74 8.14 -2.38 -0.02 1.73 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 31 H 0.08 2.61 7.23 -2.39 -0.02 2.59 16 32 H 0.04 1.87 7.07 -2.39 -0.02 1.86 16 33 H 0.06 2.81 4.91 -2.39 -0.01 2.80 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.43 11.03 8.31 -92.71 -0.77 10.26 16 36 H 0.07 3.09 7.48 -2.39 -0.02 3.07 16 37 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.06 2.69 7.21 -2.39 -0.02 2.67 16 39 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.10 1.28 8.02 -2.38 -0.02 1.26 16 41 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -70.65 362.98 4.28 -66.37 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.23 Total: 21.13 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 5.49 Total: 21.34 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -4.00 Total: -115.85 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: 0.68 Total: -38.49 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.50 kcal Total: -70.65 4.28 -66.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124074835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.815 kcal (2) G-P(sol) polarization free energy of solvation -70.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds