Wall clock time and date at job start Tue Mar 31 2020 13:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35955 * 116.99809 * 2 1 4 4 C 1.38660 * 120.06568 * 359.72752 * 3 2 1 5 5 C 1.38179 * 119.97337 * 180.27122 * 4 3 2 6 6 C 1.38266 * 120.09369 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93468 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47117 * 270.01843 * 7 6 5 9 9 O 1.21293 * 119.99899 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00087 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99883 * 0.02562 * 10 8 7 12 12 H 1.08004 * 119.99647 * 233.91455 * 11 10 8 13 13 C 1.38945 * 120.00587 * 53.91378 * 11 10 8 14 14 N 1.31410 * 119.99775 * 22.96691 * 13 11 10 15 15 Si 1.86801 * 120.00149 * 202.96982 * 13 11 10 16 16 H 1.48496 * 109.46982 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47010 * 119.99839 * 15 13 11 18 18 H 1.48501 * 109.47015 * 239.99862 * 15 13 11 19 19 C 1.46499 * 120.00125 * 180.02562 * 10 8 7 20 20 C 1.54267 * 110.03448 * 239.39020 * 19 10 8 21 21 C 1.54962 * 104.16192 * 217.13636 * 20 19 10 22 22 C 1.54894 * 102.77671 * 37.88508 * 21 20 19 23 23 C 1.53873 * 110.03473 * 122.17193 * 19 10 8 24 24 C 1.38254 * 120.12773 * 0.03999 * 6 5 4 25 25 C 1.38337 * 120.02557 * 359.95945 * 24 6 5 26 26 F 1.35102 * 120.04349 * 179.97438 * 25 24 6 27 27 H 1.09003 * 109.47114 * 299.99966 * 1 2 3 28 28 H 1.09003 * 109.47294 * 59.99573 * 1 2 3 29 29 H 1.08999 * 109.46913 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.01348 * 0.25199 * 4 3 2 31 31 H 1.07999 * 119.95340 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47567 * 30.02252 * 7 6 5 33 33 H 1.08998 * 109.47028 * 150.02314 * 7 6 5 34 34 H 0.97004 * 120.00241 * 174.69427 * 14 13 11 35 35 H 1.09002 * 110.01869 * 0.77930 * 19 10 8 36 36 H 1.09000 * 110.48631 * 335.78281 * 20 19 10 37 37 H 1.09002 * 110.49079 * 98.42518 * 20 19 10 38 38 H 1.09003 * 110.71908 * 279.57454 * 21 20 19 39 39 H 1.08994 * 110.92808 * 156.29240 * 21 20 19 40 40 H 1.09002 * 110.48754 * 203.41038 * 22 21 20 41 41 H 1.08991 * 110.60084 * 80.81928 * 22 21 20 42 42 H 1.09000 * 110.03024 * 238.57244 * 23 19 10 43 43 H 1.08997 * 110.02946 * 359.97438 * 23 19 10 44 44 H 1.07993 * 119.98908 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0057 5 6 1.9216 3.6053 -0.0114 6 6 3.3023 3.6777 -0.0108 7 6 3.9849 5.0213 -0.0164 8 6 4.2129 5.4630 -1.4391 9 8 3.8558 4.7564 -2.3580 10 7 4.8127 6.6435 -1.6903 11 6 5.2158 7.4422 -0.6516 12 1 4.8902 8.4709 -0.6035 13 6 6.0434 6.9286 0.3394 14 7 6.7960 5.8808 0.0890 15 14 6.0860 7.7273 2.0275 16 1 5.1534 8.8826 2.0521 17 1 5.6748 6.7366 3.0543 18 1 7.4643 8.1980 2.3176 19 6 5.0339 7.0731 -3.0733 20 6 6.5408 7.2849 -3.3263 21 6 6.5983 8.5174 -4.2639 22 6 5.4663 9.4199 -3.7131 23 6 4.3508 8.4297 -3.3195 24 6 4.0580 2.5200 -0.0054 25 6 3.4333 1.2857 0.0003 26 9 4.1713 0.1541 0.0050 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2136 2.3201 -0.0060 31 1 1.3341 4.5115 -0.0162 32 1 3.3560 5.7505 0.4941 33 1 4.9428 4.9443 0.4980 34 1 7.4298 5.5689 0.7538 35 1 4.6408 6.3265 -3.7634 36 1 7.0592 7.4934 -2.3904 37 1 6.9720 6.4117 -3.8160 38 1 6.3942 8.2276 -5.2947 39 1 7.5631 9.0189 -4.1890 40 1 5.1141 10.1041 -4.4851 41 1 5.8090 9.9751 -2.8401 42 1 3.6268 8.3416 -4.1295 43 1 3.8543 8.7682 -2.4101 44 1 5.1363 2.5791 -0.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125225355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:00 Heat of formation + Delta-G solvation = -96.603293 kcal Electronic energy + Delta-G solvation = -27700.336111 eV Core-core repulsion = 23725.311002 eV Total energy + Delta-G solvation = -3975.025110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.39762 -39.82454 -38.97451 -37.49160 -36.35575 -34.14826 -31.73602 -31.16799 -30.36578 -28.07852 -27.94964 -27.14213 -25.76952 -24.58682 -22.42058 -21.52199 -19.99942 -19.55410 -19.33766 -18.06024 -16.62240 -16.58149 -16.32215 -15.91737 -15.72004 -15.23716 -14.79214 -14.64601 -14.54453 -14.31551 -14.01007 -13.86385 -13.61898 -13.19435 -12.66303 -12.56614 -12.52164 -12.04401 -11.96653 -11.71873 -11.40814 -11.31029 -11.10562 -10.95816 -10.79225 -10.70172 -10.61056 -10.52173 -10.46772 -10.39206 -10.34692 -9.97530 -9.64426 -8.86713 -8.57166 -8.36041 -7.68473 -7.28934 -6.47497 -4.26328 1.52361 1.63118 3.04910 3.17743 3.19573 3.28950 3.89730 4.01198 4.13676 4.55025 4.77447 4.85342 4.92203 5.09987 5.11660 5.29055 5.37084 5.37683 5.38859 5.51019 5.59354 5.69362 5.86093 6.08436 6.19848 6.22939 6.28077 6.31821 6.34002 6.38169 6.44206 6.49682 6.51883 6.54732 6.60272 6.73700 6.82802 6.90881 7.00510 7.10236 7.17605 7.31572 7.42991 7.52134 7.99602 8.60643 8.87378 9.57667 10.01725 10.55779 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003993 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.524073 B = 7010.700157 C = 7864.778856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.076 3.924 4 C -0.181 4.181 5 C -0.083 4.083 6 C -0.045 4.045 7 C -0.097 4.097 8 C 0.517 3.483 9 O -0.606 6.606 10 N -0.447 5.447 11 C -0.338 4.338 12 H 0.083 0.917 13 C 0.054 3.946 14 N -0.852 5.852 15 Si 0.898 3.102 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.280 1.280 19 C 0.133 3.867 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.101 4.101 25 C 0.067 3.933 26 F -0.139 7.139 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.272 0.728 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 -1.507 0.900 7.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.031 3.969 4 C -0.200 4.200 5 C -0.101 4.101 6 C -0.046 4.046 7 C -0.137 4.137 8 C 0.307 3.693 9 O -0.491 6.491 10 N -0.167 5.167 11 C -0.466 4.466 12 H 0.100 0.900 13 C -0.153 4.153 14 N -0.487 5.487 15 Si 0.724 3.276 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.206 1.206 19 C 0.029 3.971 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 C -0.119 4.119 25 C 0.048 3.952 26 F -0.118 7.118 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.550 -2.234 0.541 7.892 hybrid contribution 0.218 0.363 0.871 0.969 sum -7.331 -1.871 1.412 7.697 Atomic orbital electron populations 1.23022 0.78659 1.03608 1.01336 1.86087 1.21147 1.26289 1.89427 1.18859 0.90683 0.85258 1.02140 1.20976 0.99617 0.91535 1.07884 1.20882 0.94170 0.96942 0.98121 1.19564 0.92961 0.95058 0.97039 1.20799 1.03599 0.91529 0.97753 1.20057 0.77672 0.82029 0.89546 1.90528 1.56075 1.55582 1.46933 1.43386 1.51589 1.17897 1.03788 1.19146 1.30876 0.96658 0.99937 0.89950 1.25586 0.93700 0.95939 1.00108 1.69995 1.18999 1.24818 1.34870 0.86322 0.78516 0.79822 0.82935 1.18939 1.20043 1.20615 1.21564 0.94312 0.94701 0.86529 1.22591 0.97193 0.95920 1.00141 1.22455 0.97990 0.97119 0.98556 1.22248 0.96069 0.97253 0.99788 1.22394 0.97443 0.95891 1.00780 1.20948 1.01282 0.89586 1.00119 1.16917 0.85789 0.82790 1.09749 1.91452 1.76611 1.49229 1.94498 0.92742 0.92646 0.88474 0.85075 0.85433 0.89388 0.85971 0.91774 0.90536 0.89046 0.93186 0.92626 0.92469 0.93056 0.91681 0.93052 0.91059 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.88 10.36 -19.60 -0.20 -5.08 16 3 C 0.08 1.30 6.69 -39.18 -0.26 1.04 16 4 C -0.18 -2.80 9.04 -39.45 -0.36 -3.15 16 5 C -0.08 -1.42 9.69 -39.59 -0.38 -1.80 16 6 C -0.05 -0.90 4.37 -104.61 -0.46 -1.36 16 7 C -0.10 -2.09 4.25 -29.03 -0.12 -2.21 16 8 C 0.52 12.60 7.19 -10.99 -0.08 12.52 16 9 O -0.61 -16.17 15.38 5.55 0.09 -16.09 16 10 N -0.45 -10.50 2.35 -106.54 -0.25 -10.75 16 11 C -0.34 -7.84 6.91 -14.94 -0.10 -7.95 16 12 H 0.08 1.89 7.17 -52.48 -0.38 1.51 16 13 C 0.05 1.24 3.46 -17.47 -0.06 1.18 16 14 N -0.85 -20.81 11.69 55.50 0.65 -20.16 16 15 Si 0.90 17.97 29.61 -169.99 -5.03 12.94 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 19 C 0.13 2.86 3.29 -66.81 -0.22 2.64 16 20 C -0.12 -2.43 6.42 -25.03 -0.16 -2.59 16 21 C -0.12 -2.00 6.91 -24.70 -0.17 -2.18 16 22 C -0.12 -1.84 6.83 -25.07 -0.17 -2.02 16 23 C -0.13 -2.30 6.25 -25.62 -0.16 -2.46 16 24 C -0.10 -1.99 9.67 -39.54 -0.38 -2.38 16 25 C 0.07 1.28 7.31 -39.30 -0.29 0.99 16 26 F -0.14 -2.67 17.11 2.25 0.04 -2.63 16 27 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 28 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.13 1.56 6.30 -52.48 -0.33 1.23 16 31 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 32 H 0.09 1.75 8.04 -51.93 -0.42 1.33 16 33 H 0.12 2.79 5.04 -51.93 -0.26 2.53 16 34 H 0.27 6.33 8.32 -40.82 -0.34 5.99 16 35 H 0.08 1.77 6.94 -51.93 -0.36 1.41 16 36 H 0.09 2.09 7.09 -51.93 -0.37 1.72 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.36 6.83 -51.93 -0.35 1.00 16 44 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -28.22 360.11 -7.88 -36.10 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.21 Total: 8.69 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.39 Total: -8.44 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.40 Total: -30.91 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.12 Total: -21.17 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.22 -7.88 -36.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125225355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.501 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds