Wall clock time and date at job start Tue Mar 31 2020 13:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35955 * 116.99809 * 2 1 4 4 C 1.38660 * 120.06568 * 359.72752 * 3 2 1 5 5 C 1.38179 * 119.97337 * 180.27122 * 4 3 2 6 6 C 1.38266 * 120.09369 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93468 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47117 * 270.01843 * 7 6 5 9 9 O 1.21293 * 119.99899 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00087 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99883 * 0.02562 * 10 8 7 12 12 H 1.08004 * 119.99647 * 233.91455 * 11 10 8 13 13 C 1.38945 * 120.00587 * 53.91378 * 11 10 8 14 14 N 1.31410 * 119.99775 * 22.96691 * 13 11 10 15 15 Si 1.86801 * 120.00149 * 202.96982 * 13 11 10 16 16 H 1.48496 * 109.46982 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47010 * 119.99839 * 15 13 11 18 18 H 1.48501 * 109.47015 * 239.99862 * 15 13 11 19 19 C 1.46499 * 120.00125 * 180.02562 * 10 8 7 20 20 C 1.54267 * 110.03448 * 239.39020 * 19 10 8 21 21 C 1.54962 * 104.16192 * 217.13636 * 20 19 10 22 22 C 1.54894 * 102.77671 * 37.88508 * 21 20 19 23 23 C 1.53873 * 110.03473 * 122.17193 * 19 10 8 24 24 C 1.38254 * 120.12773 * 0.03999 * 6 5 4 25 25 C 1.38337 * 120.02557 * 359.95945 * 24 6 5 26 26 F 1.35102 * 120.04349 * 179.97438 * 25 24 6 27 27 H 1.09003 * 109.47114 * 299.99966 * 1 2 3 28 28 H 1.09003 * 109.47294 * 59.99573 * 1 2 3 29 29 H 1.08999 * 109.46913 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.01348 * 0.25199 * 4 3 2 31 31 H 1.07999 * 119.95340 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47567 * 30.02252 * 7 6 5 33 33 H 1.08998 * 109.47028 * 150.02314 * 7 6 5 34 34 H 0.97004 * 120.00241 * 174.69427 * 14 13 11 35 35 H 1.09002 * 110.01869 * 0.77930 * 19 10 8 36 36 H 1.09000 * 110.48631 * 335.78281 * 20 19 10 37 37 H 1.09002 * 110.49079 * 98.42518 * 20 19 10 38 38 H 1.09003 * 110.71908 * 279.57454 * 21 20 19 39 39 H 1.08994 * 110.92808 * 156.29240 * 21 20 19 40 40 H 1.09002 * 110.48754 * 203.41038 * 22 21 20 41 41 H 1.08991 * 110.60084 * 80.81928 * 22 21 20 42 42 H 1.09000 * 110.03024 * 238.57244 * 23 19 10 43 43 H 1.08997 * 110.02946 * 359.97438 * 23 19 10 44 44 H 1.07993 * 119.98908 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0057 5 6 1.9216 3.6053 -0.0114 6 6 3.3023 3.6777 -0.0108 7 6 3.9849 5.0213 -0.0164 8 6 4.2129 5.4630 -1.4391 9 8 3.8558 4.7564 -2.3580 10 7 4.8127 6.6435 -1.6903 11 6 5.2158 7.4422 -0.6516 12 1 4.8902 8.4709 -0.6035 13 6 6.0434 6.9286 0.3394 14 7 6.7960 5.8808 0.0890 15 14 6.0860 7.7273 2.0275 16 1 5.1534 8.8826 2.0521 17 1 5.6748 6.7366 3.0543 18 1 7.4643 8.1980 2.3176 19 6 5.0339 7.0731 -3.0733 20 6 6.5408 7.2849 -3.3263 21 6 6.5983 8.5174 -4.2639 22 6 5.4663 9.4199 -3.7131 23 6 4.3508 8.4297 -3.3195 24 6 4.0580 2.5200 -0.0054 25 6 3.4333 1.2857 0.0003 26 9 4.1713 0.1541 0.0050 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2136 2.3201 -0.0060 31 1 1.3341 4.5115 -0.0162 32 1 3.3560 5.7505 0.4941 33 1 4.9428 4.9443 0.4980 34 1 7.4298 5.5689 0.7538 35 1 4.6408 6.3265 -3.7634 36 1 7.0592 7.4934 -2.3904 37 1 6.9720 6.4117 -3.8160 38 1 6.3942 8.2276 -5.2947 39 1 7.5631 9.0189 -4.1890 40 1 5.1141 10.1041 -4.4851 41 1 5.8090 9.9751 -2.8401 42 1 3.6268 8.3416 -4.1295 43 1 3.8543 8.7682 -2.4101 44 1 5.1363 2.5791 -0.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125225355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:59 Heat of formation + Delta-G solvation = -110.499832 kcal Electronic energy + Delta-G solvation = -27700.938711 eV Core-core repulsion = 23725.311002 eV Total energy + Delta-G solvation = -3975.627709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.87422 -41.21108 -40.59761 -38.88168 -37.93172 -35.95135 -33.40093 -32.77765 -31.73072 -29.44978 -29.38229 -28.45801 -27.25216 -26.30818 -23.77900 -22.97468 -21.41524 -21.24762 -21.02210 -19.28978 -18.36766 -17.96321 -17.83454 -17.34944 -17.17806 -17.01196 -16.20360 -16.06410 -15.89710 -15.81334 -15.50486 -15.27324 -15.14164 -14.68761 -14.29381 -14.16968 -14.01325 -13.44216 -13.20914 -13.17070 -13.02156 -12.84394 -12.64013 -12.37483 -12.30786 -12.22113 -12.02586 -12.02153 -11.92129 -11.85796 -11.81092 -11.37221 -11.29634 -10.68280 -10.25184 -9.92412 -9.13115 -9.08240 -8.27987 -6.12881 0.12463 0.23649 1.43932 1.52675 1.62123 2.17819 2.19455 2.36384 2.51728 2.99337 3.13670 3.22743 3.69824 3.82360 3.88956 3.93799 4.09007 4.20915 4.27466 4.40046 4.41107 4.48832 4.58410 4.67186 4.67640 4.73729 4.78437 4.82499 4.85927 4.90886 4.93294 5.02726 5.09987 5.13080 5.17295 5.21644 5.26215 5.45387 5.53198 5.58564 5.60789 5.64803 5.70342 6.18596 6.30477 6.75931 7.05676 7.71545 8.17712 8.76141 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003993 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.524073 B = 7010.700157 C = 7864.778856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.084 3.916 4 C -0.167 4.167 5 C -0.080 4.080 6 C -0.070 4.070 7 C -0.087 4.087 8 C 0.500 3.500 9 O -0.639 6.639 10 N -0.450 5.450 11 C -0.345 4.345 12 H 0.088 0.912 13 C 0.026 3.974 14 N -0.883 5.883 15 Si 0.958 3.042 16 H -0.253 1.253 17 H -0.275 1.275 18 H -0.284 1.284 19 C 0.120 3.880 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.117 4.117 25 C 0.042 3.958 26 F -0.147 7.147 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.176 0.824 31 H 0.151 0.849 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.272 0.728 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.834 -0.164 1.139 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.038 3.962 4 C -0.185 4.185 5 C -0.098 4.098 6 C -0.071 4.071 7 C -0.126 4.126 8 C 0.291 3.709 9 O -0.528 6.528 10 N -0.169 5.169 11 C -0.473 4.473 12 H 0.105 0.895 13 C -0.179 4.179 14 N -0.519 5.519 15 Si 0.782 3.218 16 H -0.177 1.177 17 H -0.200 1.200 18 H -0.210 1.210 19 C 0.017 3.983 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.158 4.158 24 C -0.136 4.136 25 C 0.023 3.977 26 F -0.126 7.126 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.193 0.807 31 H 0.168 0.832 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.807 -0.867 0.776 9.876 hybrid contribution 0.869 -0.154 0.748 1.157 sum -8.938 -1.021 1.524 9.124 Atomic orbital electron populations 1.23465 0.75597 1.05984 1.02824 1.86085 1.24263 1.25412 1.88938 1.18952 0.90031 0.86658 1.00608 1.21372 1.01591 0.89943 1.05613 1.21171 0.93072 0.98755 0.96831 1.19540 0.94370 0.93896 0.99279 1.20636 1.03215 0.92993 0.95762 1.20624 0.77638 0.82137 0.90501 1.90481 1.57694 1.56513 1.48096 1.43606 1.50792 1.17740 1.04759 1.19325 1.30977 0.96760 1.00221 0.89453 1.26198 0.92965 0.96102 1.02676 1.70093 1.19682 1.26224 1.35872 0.85413 0.78324 0.79222 0.78881 1.17680 1.20004 1.20966 1.21780 0.95403 0.95922 0.85240 1.22487 0.95891 0.97505 0.99716 1.22423 0.99260 0.95038 0.98304 1.22222 0.94728 0.96897 1.00660 1.22325 0.98271 0.94263 1.00945 1.20843 1.00573 0.90592 1.01605 1.17088 0.87064 0.82200 1.11377 1.91415 1.77045 1.49436 1.94725 0.90780 0.91436 0.85929 0.80691 0.83165 0.88055 0.87727 0.91814 0.93015 0.91960 0.94772 0.90870 0.90783 0.89691 0.91990 0.91551 0.92004 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -9.64 10.36 -93.05 -0.96 -10.60 16 3 C 0.08 2.76 6.69 22.53 0.15 2.92 16 4 C -0.17 -4.72 9.04 22.36 0.20 -4.52 16 5 C -0.08 -2.64 9.69 22.26 0.22 -2.43 16 6 C -0.07 -2.83 4.37 -19.85 -0.09 -2.92 16 7 C -0.09 -3.83 4.25 29.10 0.12 -3.71 16 8 C 0.50 25.29 7.19 87.66 0.63 25.92 16 9 O -0.64 -35.61 15.38 -3.07 -0.05 -35.66 16 10 N -0.45 -21.78 2.35 -609.38 -1.43 -23.21 16 11 C -0.35 -16.19 6.91 84.04 0.58 -15.61 16 12 H 0.09 3.97 7.17 -2.91 -0.02 3.95 16 13 C 0.03 1.19 3.46 84.93 0.29 1.48 16 14 N -0.88 -44.77 11.69 21.66 0.25 -44.51 16 15 Si 0.96 36.81 29.61 68.60 2.03 38.84 16 16 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 17 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 18 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 19 C 0.12 5.28 3.29 45.72 0.15 5.43 16 20 C -0.12 -4.86 6.42 31.69 0.20 -4.66 16 21 C -0.11 -3.46 6.91 31.91 0.22 -3.24 16 22 C -0.11 -3.15 6.83 31.67 0.22 -2.93 16 23 C -0.12 -4.22 6.25 31.32 0.20 -4.03 16 24 C -0.12 -4.90 9.67 22.30 0.22 -4.69 16 25 C 0.04 1.65 7.31 22.45 0.16 1.82 16 26 F -0.15 -5.89 17.11 44.97 0.77 -5.12 16 27 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 28 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 29 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.18 3.34 6.30 -2.91 -0.02 3.32 16 31 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.10 4.05 8.04 -2.39 -0.02 4.03 16 33 H 0.11 5.00 5.04 -2.39 -0.01 4.99 16 34 H 0.27 13.16 8.32 -92.71 -0.77 12.39 16 35 H 0.05 2.49 6.94 -2.39 -0.02 2.48 16 36 H 0.06 2.94 7.09 -2.39 -0.02 2.92 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.06 2.29 6.83 -2.39 -0.02 2.28 16 44 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -64.36 360.11 6.21 -58.15 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 1.01 Total: 31.92 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.59 Total: -9.80 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -1.18 Total: -67.73 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -1.01 Total: -46.26 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.77 Total: -5.12 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -64.36 6.21 -58.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125225355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.350 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds