Wall clock time and date at job start Tue Mar 31 2020 12:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47089 * 2 1 4 4 C 1.46503 * 120.00355 * 270.00340 * 3 2 1 5 5 C 1.50701 * 109.47102 * 270.00179 * 4 3 2 6 6 H 1.08003 * 120.00111 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00157 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99776 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00323 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46929 * 59.99717 * 9 7 5 11 11 H 1.48501 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47110 * 299.99763 * 9 7 5 13 13 C 1.34779 * 119.99917 * 90.00368 * 3 2 1 14 14 O 1.21585 * 120.00123 * 179.97438 * 13 3 2 15 15 N 1.34779 * 119.99911 * 359.97438 * 13 3 2 16 16 C 1.39944 * 119.99850 * 183.40895 * 15 13 3 17 17 C 1.38881 * 120.07355 * 46.97419 * 16 15 13 18 18 C 1.50706 * 120.03301 * 359.97438 * 17 16 15 19 19 C 1.38095 * 119.93127 * 180.02562 * 17 16 15 20 20 C 1.38300 * 120.07079 * 359.97438 * 19 17 16 21 21 C 1.38258 * 120.13975 * 0.27827 * 20 19 17 22 22 N 1.48016 * 119.96647 * 179.72105 * 21 20 19 23 23 O 1.21803 * 120.00190 * 38.07273 * 22 21 20 24 24 O 1.21806 * 120.00179 * 218.07351 * 22 21 20 25 25 C 1.38143 * 120.06906 * 359.45214 * 21 20 19 26 26 C 1.50702 * 120.03730 * 180.29800 * 25 21 20 27 27 H 1.09000 * 109.47182 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46676 * 299.99338 * 1 2 3 29 29 H 1.08995 * 109.47383 * 59.99652 * 1 2 3 30 30 H 1.09005 * 109.47161 * 240.00738 * 2 1 3 31 31 H 1.08995 * 109.47383 * 120.00348 * 2 1 3 32 32 H 1.09000 * 109.46803 * 30.00177 * 4 3 2 33 33 H 1.08999 * 109.46859 * 150.00018 * 4 3 2 34 34 H 0.97003 * 120.00413 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00096 * 3.41243 * 15 13 3 36 36 H 1.08995 * 109.47101 * 262.90278 * 18 17 16 37 37 H 1.09002 * 109.46673 * 22.90892 * 18 17 16 38 38 H 1.09006 * 109.46351 * 142.90124 * 18 17 16 39 39 H 1.07997 * 119.96294 * 180.02562 * 19 17 16 40 40 H 1.07999 * 119.93120 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.46906 * 267.60064 * 26 25 21 42 42 H 1.08999 * 109.46834 * 27.59582 * 26 25 21 43 43 H 1.08999 * 109.46787 * 147.59642 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8774 8 7 3.3492 3.1268 -3.6175 9 14 5.9137 2.0977 -3.4165 10 1 6.1415 0.6412 -3.5944 11 1 6.1611 2.7978 -4.7025 12 1 6.8408 2.6209 -2.3813 13 6 2.2430 2.0165 1.1672 14 8 2.6487 3.1627 1.1673 15 7 2.0180 1.3813 2.3344 16 6 2.1827 2.0632 3.5453 17 6 1.6366 3.3294 3.7108 18 6 0.8659 3.9714 2.5860 19 6 1.8014 3.9999 4.9067 20 6 2.5090 3.4117 5.9392 21 6 3.0583 2.1535 5.7758 22 7 3.8201 1.5301 6.8813 23 8 3.4514 1.6758 8.0330 24 8 4.8157 0.8714 6.6392 25 6 2.8922 1.4752 4.5839 26 6 3.4856 0.1010 4.4090 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1382 34 1 3.6752 3.5174 -4.4434 35 1 1.7418 0.4514 2.3352 36 1 1.5213 4.6461 2.0353 37 1 0.4924 3.1986 1.9142 38 1 0.0266 4.5337 2.9954 39 1 1.3766 4.9844 5.0362 40 1 2.6369 3.9383 6.8734 41 1 4.4784 0.1875 3.9675 42 1 3.5612 -0.3884 5.3800 43 1 2.8464 -0.4899 3.7530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127751079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:08 Heat of formation + Delta-G solvation = 5.137235 kcal Electronic energy + Delta-G solvation = -27856.799705 eV Core-core repulsion = 23906.106358 eV Total energy + Delta-G solvation = -3950.693348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30205 -40.91691 -38.96366 -36.61887 -35.73809 -34.89760 -33.91023 -32.84349 -31.09368 -30.28590 -28.63014 -27.76323 -26.76189 -24.90461 -23.50251 -23.21680 -21.89632 -21.46641 -19.95996 -19.03147 -18.65686 -17.95355 -17.53429 -16.53398 -16.46467 -15.93805 -15.47388 -15.00739 -14.76087 -14.44804 -14.11223 -13.86766 -13.79074 -13.46207 -13.12631 -13.04608 -12.74129 -12.21856 -12.15660 -12.11708 -11.96707 -11.78750 -11.63187 -11.57347 -11.30120 -11.15308 -11.05165 -10.97444 -10.92381 -10.62770 -10.27567 -10.19870 -9.72366 -9.48745 -9.20330 -8.51314 -8.50271 -7.78699 -6.12335 -4.17319 -0.03264 0.80855 1.14488 1.35266 2.88360 3.12023 3.27277 3.32100 3.35747 3.64723 4.14483 4.22832 4.34748 4.39991 4.50868 4.76654 4.96115 5.05143 5.13392 5.17002 5.22362 5.32220 5.41672 5.43515 5.51259 5.66739 5.76085 5.79076 5.80838 5.82526 5.94468 6.05384 6.12727 6.30081 6.34468 6.44796 6.58653 6.72305 7.19149 7.35043 7.48744 7.59683 7.84404 8.13151 8.37520 8.82113 9.04659 9.48439 10.95452 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.003615 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.879927 B = 7743.192496 C = 8156.662885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.604 5.604 4 C 0.262 3.738 5 C -0.530 4.530 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.698 3.302 14 O -0.563 6.563 15 N -0.695 5.695 16 C 0.179 3.821 17 C -0.023 4.023 18 C -0.110 4.110 19 C -0.108 4.108 20 C -0.071 4.071 21 C -0.035 4.035 22 N 0.030 4.970 23 O -0.165 6.165 24 O -0.153 6.153 25 C -0.046 4.046 26 C -0.119 4.119 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 -4.193 14.948 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.401 3.599 14 O -0.439 6.439 15 N -0.348 5.348 16 C 0.082 3.918 17 C -0.026 4.026 18 C -0.166 4.166 19 C -0.127 4.127 20 C -0.091 4.091 21 C -0.118 4.118 22 N 0.551 4.449 23 O -0.380 6.380 24 O -0.371 6.371 25 C -0.050 4.050 26 C -0.176 4.176 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.828 -2.960 14.064 16.366 hybrid contribution 1.127 -0.846 -0.071 1.411 sum -6.702 -3.806 13.993 15.975 Atomic orbital electron populations 1.22251 0.96529 1.01647 1.02536 1.21398 0.93653 0.84285 1.02539 1.47630 1.66804 1.13307 1.06096 1.19245 0.96307 0.93399 0.76708 1.21398 0.96935 1.32174 1.06358 0.92544 1.24905 0.97843 0.94820 0.96326 1.69911 1.35756 1.33266 1.14385 0.86567 0.84761 0.78298 0.77864 1.20235 1.21131 1.20188 1.15823 0.79448 0.84819 0.79825 1.90923 1.51173 1.16309 1.85452 1.42937 1.73347 1.15489 1.03015 1.16758 0.96802 0.92778 0.85476 1.20354 0.93719 0.93134 0.95415 1.21099 0.98633 1.01500 0.95342 1.20863 0.99731 1.00641 0.91480 1.20792 0.95504 0.92234 1.00591 1.20470 1.06046 0.97028 0.88295 1.43578 1.00170 0.99077 1.02086 1.94526 1.72595 1.65129 1.05760 1.94539 1.14767 1.37457 1.90328 1.19475 0.95820 0.98678 0.91058 1.20910 1.02170 0.90951 1.03524 0.91973 0.93177 0.91649 0.89285 0.92599 0.94717 0.93700 0.92592 0.75806 0.87575 0.91464 0.92132 0.83437 0.83707 0.88676 0.90698 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.11 1.49 5.92 -4.04 -0.02 1.46 16 3 N -0.60 -11.47 2.46 -180.80 -0.44 -11.91 16 4 C 0.26 6.34 5.16 -5.19 -0.03 6.32 16 5 C -0.53 -14.32 9.39 -34.44 -0.32 -14.64 16 6 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 9 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.70 13.10 6.36 -86.91 -0.55 12.55 16 14 O -0.56 -12.66 12.16 5.29 0.06 -12.60 16 15 N -0.70 -9.90 4.38 -14.22 -0.06 -9.97 16 16 C 0.18 2.50 5.97 -83.69 -0.50 2.00 16 17 C -0.02 -0.31 5.48 -104.43 -0.57 -0.88 16 18 C -0.11 -1.50 8.07 36.01 0.29 -1.21 16 19 C -0.11 -1.17 9.72 -39.61 -0.39 -1.56 16 20 C -0.07 -0.80 9.67 -39.55 -0.38 -1.18 16 21 C -0.04 -0.47 6.46 -79.98 -0.52 -0.98 16 22 N 0.03 0.43 4.09 33.95 0.14 0.57 16 23 O -0.16 -2.36 18.96 -29.46 -0.56 -2.92 16 24 O -0.15 -2.28 16.66 -29.46 -0.49 -2.77 16 25 C -0.05 -0.61 5.89 -104.43 -0.61 -1.22 16 26 C -0.12 -1.37 8.65 36.01 0.31 -1.06 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.06 0.63 6.32 -51.93 -0.33 0.30 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.40 4.60 5.40 -40.82 -0.22 4.38 16 36 H 0.11 1.74 6.73 -51.93 -0.35 1.39 16 37 H 0.07 1.01 5.97 -51.93 -0.31 0.70 16 38 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 39 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.15 1.32 8.02 -52.49 -0.42 0.90 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 0.85 6.40 -51.93 -0.33 0.51 16 43 H 0.07 0.68 6.85 -51.93 -0.36 0.32 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -31.68 359.41 -8.86 -40.54 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.62 Total: 2.51 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.01 Total: -0.36 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.37 Total: -46.15 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.99 Total: -18.29 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.68 -8.86 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127751079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.675 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds