Wall clock time and date at job start Tue Mar 31 2020 12:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47089 * 2 1 4 4 C 1.46503 * 120.00355 * 270.00340 * 3 2 1 5 5 C 1.50701 * 109.47102 * 270.00179 * 4 3 2 6 6 H 1.08003 * 120.00111 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00157 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99776 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00323 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46929 * 59.99717 * 9 7 5 11 11 H 1.48501 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47110 * 299.99763 * 9 7 5 13 13 C 1.34779 * 119.99917 * 90.00368 * 3 2 1 14 14 O 1.21585 * 120.00123 * 179.97438 * 13 3 2 15 15 N 1.34779 * 119.99911 * 359.97438 * 13 3 2 16 16 C 1.39944 * 119.99850 * 183.40895 * 15 13 3 17 17 C 1.38881 * 120.07355 * 46.97419 * 16 15 13 18 18 C 1.50706 * 120.03301 * 359.97438 * 17 16 15 19 19 C 1.38095 * 119.93127 * 180.02562 * 17 16 15 20 20 C 1.38300 * 120.07079 * 359.97438 * 19 17 16 21 21 C 1.38258 * 120.13975 * 0.27827 * 20 19 17 22 22 N 1.48016 * 119.96647 * 179.72105 * 21 20 19 23 23 O 1.21803 * 120.00190 * 38.07273 * 22 21 20 24 24 O 1.21806 * 120.00179 * 218.07351 * 22 21 20 25 25 C 1.38143 * 120.06906 * 359.45214 * 21 20 19 26 26 C 1.50702 * 120.03730 * 180.29800 * 25 21 20 27 27 H 1.09000 * 109.47182 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46676 * 299.99338 * 1 2 3 29 29 H 1.08995 * 109.47383 * 59.99652 * 1 2 3 30 30 H 1.09005 * 109.47161 * 240.00738 * 2 1 3 31 31 H 1.08995 * 109.47383 * 120.00348 * 2 1 3 32 32 H 1.09000 * 109.46803 * 30.00177 * 4 3 2 33 33 H 1.08999 * 109.46859 * 150.00018 * 4 3 2 34 34 H 0.97003 * 120.00413 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00096 * 3.41243 * 15 13 3 36 36 H 1.08995 * 109.47101 * 262.90278 * 18 17 16 37 37 H 1.09002 * 109.46673 * 22.90892 * 18 17 16 38 38 H 1.09006 * 109.46351 * 142.90124 * 18 17 16 39 39 H 1.07997 * 119.96294 * 180.02562 * 19 17 16 40 40 H 1.07999 * 119.93120 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.46906 * 267.60064 * 26 25 21 42 42 H 1.08999 * 109.46834 * 27.59582 * 26 25 21 43 43 H 1.08999 * 109.46787 * 147.59642 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8774 8 7 3.3492 3.1268 -3.6175 9 14 5.9137 2.0977 -3.4165 10 1 6.1415 0.6412 -3.5944 11 1 6.1611 2.7978 -4.7025 12 1 6.8408 2.6209 -2.3813 13 6 2.2430 2.0165 1.1672 14 8 2.6487 3.1627 1.1673 15 7 2.0180 1.3813 2.3344 16 6 2.1827 2.0632 3.5453 17 6 1.6366 3.3294 3.7108 18 6 0.8659 3.9714 2.5860 19 6 1.8014 3.9999 4.9067 20 6 2.5090 3.4117 5.9392 21 6 3.0583 2.1535 5.7758 22 7 3.8201 1.5301 6.8813 23 8 3.4514 1.6758 8.0330 24 8 4.8157 0.8714 6.6392 25 6 2.8922 1.4752 4.5839 26 6 3.4856 0.1010 4.4090 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1382 34 1 3.6752 3.5174 -4.4434 35 1 1.7418 0.4514 2.3352 36 1 1.5213 4.6461 2.0353 37 1 0.4924 3.1986 1.9142 38 1 0.0266 4.5337 2.9954 39 1 1.3766 4.9844 5.0362 40 1 2.6369 3.9383 6.8734 41 1 4.4784 0.1875 3.9675 42 1 3.5612 -0.3884 5.3800 43 1 2.8464 -0.4899 3.7530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127751079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:06 Heat of formation + Delta-G solvation = -12.127192 kcal Electronic energy + Delta-G solvation = -27857.548347 eV Core-core repulsion = 23906.106358 eV Total energy + Delta-G solvation = -3951.441990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.37542 -42.14202 -40.19454 -37.71747 -37.17828 -36.16792 -34.94405 -34.81032 -32.19458 -31.65917 -29.69672 -29.18210 -28.15623 -25.95362 -25.21549 -24.44077 -23.09231 -22.51162 -21.26286 -20.14768 -19.75031 -19.24957 -18.71027 -18.53133 -17.74993 -17.11842 -16.69600 -16.42546 -16.06067 -15.93790 -15.39789 -15.00639 -14.74919 -14.65798 -14.47438 -14.20504 -13.96423 -13.70804 -13.33420 -13.19621 -13.15061 -13.08814 -12.87703 -12.74338 -12.70118 -12.61589 -12.50912 -12.27004 -12.20263 -12.05469 -11.97372 -11.76176 -11.42998 -10.99232 -10.62847 -10.20295 -9.72897 -9.28400 -8.21520 -6.35281 -1.10031 -0.16534 0.08641 0.30286 1.36815 1.39937 1.46553 1.60803 2.02860 2.29629 2.38965 2.89878 3.08880 3.28686 3.41140 3.54319 3.80912 3.94584 4.02908 4.16262 4.25193 4.34158 4.41516 4.46905 4.49787 4.71518 4.72716 4.78395 4.84046 4.89778 4.94103 4.97562 5.00676 5.14387 5.20929 5.26622 5.33131 5.34755 5.56154 5.61788 5.75523 5.98580 6.07484 6.47367 6.73295 6.98048 7.31470 7.60038 8.84460 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.003615 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.879927 B = 7743.192496 C = 8156.662885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.611 5.611 4 C 0.282 3.718 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.699 3.301 14 O -0.607 6.607 15 N -0.676 5.676 16 C 0.157 3.843 17 C -0.035 4.035 18 C -0.102 4.102 19 C -0.096 4.096 20 C -0.061 4.061 21 C -0.050 4.050 22 N 0.032 4.968 23 O -0.158 6.158 24 O -0.177 6.177 25 C -0.048 4.048 26 C -0.119 4.119 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.027 0.973 33 H 0.004 0.996 34 H 0.267 0.733 35 H 0.418 0.582 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.183 0.817 40 H 0.171 0.829 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -5.031 16.584 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.345 5.345 4 C 0.161 3.839 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.565 5.565 9 Si 0.785 3.215 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.402 3.598 14 O -0.486 6.486 15 N -0.329 5.329 16 C 0.060 3.940 17 C -0.038 4.038 18 C -0.158 4.158 19 C -0.115 4.115 20 C -0.081 4.081 21 C -0.133 4.133 22 N 0.551 4.449 23 O -0.377 6.377 24 O -0.390 6.390 25 C -0.052 4.052 26 C -0.176 4.176 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.022 0.978 34 H 0.076 0.924 35 H 0.259 0.741 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.200 0.800 40 H 0.188 0.812 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.184 -3.884 15.722 18.145 hybrid contribution 1.165 -0.542 -0.476 1.371 sum -7.019 -4.426 15.246 17.358 Atomic orbital electron populations 1.22166 0.94362 1.03597 1.01846 1.21711 0.95417 0.81565 1.03719 1.47448 1.67289 1.15035 1.04702 1.18629 0.94918 0.91553 0.78843 1.21697 0.98119 1.31914 1.06399 0.93162 1.25724 1.01801 0.94582 0.96498 1.70019 1.37552 1.34122 1.14803 0.85589 0.79697 0.78934 0.77312 1.18663 1.20404 1.20737 1.15880 0.78970 0.84333 0.80647 1.90901 1.53062 1.18329 1.86271 1.42502 1.72649 1.15883 1.01875 1.16915 0.98213 0.93576 0.85281 1.20535 0.93913 0.93144 0.96209 1.20936 0.99103 1.00662 0.95122 1.21210 0.98688 1.01585 0.90021 1.21160 0.94003 0.91344 1.01583 1.20688 1.06641 0.97875 0.88101 1.43714 1.00047 0.98863 1.02245 1.94508 1.72346 1.64695 1.06161 1.94545 1.15539 1.38513 1.90430 1.19560 0.95473 0.99303 0.90833 1.20942 1.01994 0.90573 1.04045 0.88600 0.92508 0.93710 0.90246 0.89267 0.95511 0.97772 0.92437 0.74125 0.90745 0.93376 0.88835 0.79979 0.81151 0.89615 0.90580 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 10.24 71.98 0.74 -2.75 16 2 C 0.10 2.67 5.92 86.38 0.51 3.18 16 3 N -0.61 -23.61 2.46 -844.19 -2.07 -25.69 16 4 C 0.28 14.22 5.16 85.63 0.44 14.66 16 5 C -0.54 -30.03 9.39 25.60 0.24 -29.79 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.75 5.46 84.65 0.46 1.21 16 8 N -0.93 -54.15 13.29 21.45 0.28 -53.86 16 9 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 C 0.70 26.62 6.36 179.05 1.14 27.76 16 14 O -0.61 -28.35 12.16 -3.98 -0.05 -28.40 16 15 N -0.68 -18.69 4.38 -317.18 -1.39 -20.08 16 16 C 0.16 4.20 5.97 38.15 0.23 4.43 16 17 C -0.04 -0.89 5.48 -19.74 -0.11 -1.00 16 18 C -0.10 -2.77 8.07 71.24 0.58 -2.19 16 19 C -0.10 -1.82 9.72 22.25 0.22 -1.60 16 20 C -0.06 -1.20 9.67 22.29 0.22 -0.98 16 21 C -0.05 -1.23 6.46 36.36 0.24 -0.99 16 22 N 0.03 0.87 4.09 -46.51 -0.19 0.68 16 23 O -0.16 -4.23 18.96 18.88 0.36 -3.87 16 24 O -0.18 -5.16 16.66 18.88 0.31 -4.84 16 25 C -0.05 -1.19 5.89 -19.74 -0.12 -1.31 16 26 C -0.12 -2.58 8.65 71.24 0.62 -1.96 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.08 2.32 8.07 -2.38 -0.02 2.30 16 31 H 0.09 1.80 6.32 -2.39 -0.02 1.79 16 32 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 33 H 0.00 0.24 7.42 -2.39 -0.02 0.22 16 34 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.42 8.72 5.40 -92.71 -0.50 8.22 16 36 H 0.07 2.54 6.73 -2.39 -0.02 2.52 16 37 H 0.05 1.46 5.97 -2.39 -0.01 1.45 16 38 H 0.09 1.82 8.13 -2.38 -0.02 1.80 16 39 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.17 2.45 8.02 -2.91 -0.02 2.43 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.08 1.63 6.40 -2.39 -0.02 1.61 16 43 H 0.09 1.55 6.85 -2.39 -0.02 1.53 16 Total: -1.00 -71.44 359.41 5.22 -66.22 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.55 Total: 15.08 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 5.39 Total: 8.67 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -3.37 Total: -98.96 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: 0.62 Total: -37.11 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.44 5.22 -66.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127751079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.089 kcal (2) G-P(sol) polarization free energy of solvation -71.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds