Wall clock time and date at job start Tue Mar 31 2020 12:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46819 * 2 1 4 4 C 1.37106 * 119.99753 * 291.29062 * 3 2 1 5 5 H 1.08001 * 119.99444 * 158.71132 * 4 3 2 6 6 C 1.38946 * 120.00307 * 338.71705 * 4 3 2 7 7 N 1.31416 * 119.99952 * 356.29162 * 6 4 3 8 8 Si 1.86799 * 120.00077 * 176.28802 * 6 4 3 9 9 H 1.48496 * 109.46950 * 59.99961 * 8 6 4 10 10 H 1.48502 * 109.47216 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46868 * 299.99958 * 8 6 4 12 12 C 1.34769 * 120.00366 * 111.29882 * 3 2 1 13 13 O 1.21294 * 120.00640 * 175.86838 * 12 3 2 14 14 C 1.50700 * 119.99981 * 356.14284 * 12 3 2 15 15 C 1.50702 * 109.54324 * 66.15378 * 14 12 3 16 16 C 1.38247 * 119.97541 * 175.99084 * 15 14 12 17 17 C 1.38194 * 120.02620 * 179.77250 * 16 15 14 18 18 C 1.38461 * 119.97279 * 0.50223 * 17 16 15 19 19 F 1.35105 * 120.02403 * 179.76874 * 18 17 16 20 20 C 1.38460 * 119.94841 * 359.75506 * 18 17 16 21 21 C 1.38195 * 119.97584 * 359.97438 * 20 18 17 22 22 C 1.53184 * 109.54269 * 305.89106 * 14 12 3 23 23 C 1.53088 * 109.16058 * 297.11290 * 22 14 12 24 24 O 1.42907 * 109.41516 * 302.38896 * 23 22 14 25 25 C 1.42898 * 114.09658 * 61.15898 * 24 23 22 26 26 C 1.53090 * 109.41782 * 298.84496 * 25 24 23 27 27 H 1.09002 * 109.47485 * 306.60662 * 1 2 3 28 28 H 1.08992 * 109.47394 * 66.60719 * 1 2 3 29 29 H 1.09002 * 109.46965 * 186.61028 * 1 2 3 30 30 H 1.08997 * 109.47011 * 240.00286 * 2 1 3 31 31 H 1.08993 * 109.47534 * 119.99657 * 2 1 3 32 32 H 0.96996 * 120.00231 * 180.02562 * 7 6 4 33 33 H 1.08006 * 119.98607 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.01210 * 180.26232 * 17 16 15 35 35 H 1.07996 * 120.01151 * 179.97438 * 20 18 17 36 36 H 1.07999 * 119.98718 * 180.02562 * 21 20 18 37 37 H 1.09002 * 109.52232 * 57.01785 * 22 14 12 38 38 H 1.09004 * 109.51975 * 177.20686 * 22 14 12 39 39 H 1.08998 * 109.48199 * 182.41140 * 23 22 14 40 40 H 1.09001 * 109.49083 * 62.37757 * 23 22 14 41 41 H 1.09003 * 109.47914 * 178.85652 * 25 24 23 42 42 H 1.09002 * 109.48841 * 58.83360 * 25 24 23 43 43 H 1.09006 * 109.52011 * 297.70268 * 26 25 24 44 44 H 1.08994 * 109.52432 * 177.51490 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 1.8402 2.1713 -1.1064 5 1 1.8725 3.2467 -1.0127 6 6 1.6181 1.5883 -2.3479 7 7 1.6511 0.2807 -2.4752 8 14 1.2726 2.6631 -3.8361 9 1 2.4232 3.5728 -4.0675 10 1 1.0715 1.8045 -5.0309 11 1 0.0475 3.4665 -3.5927 12 6 2.6425 1.8754 1.0874 13 8 3.1130 2.9931 1.0612 14 6 2.7616 1.0369 2.3339 15 6 3.6487 -0.1502 2.0601 16 6 3.9728 -1.0210 3.0838 17 6 4.7823 -2.1125 2.8329 18 6 5.2775 -2.3280 1.5579 19 9 6.0729 -3.3922 1.3125 20 6 4.9566 -1.4522 0.5346 21 6 4.1423 -0.3645 0.7866 22 6 1.3723 0.5530 2.7606 23 6 0.5039 1.7642 3.1106 24 8 1.1380 2.5205 4.1442 25 6 2.4203 3.0387 3.7851 26 6 3.3657 1.8787 3.4620 27 1 -0.3634 0.6128 0.8249 28 1 -0.3634 0.4080 -0.9431 29 1 -0.3633 -1.0209 0.1183 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 1.4965 -0.1263 -3.3420 33 1 3.5897 -0.8505 4.0791 34 1 5.0319 -2.7950 3.6318 35 1 5.3426 -1.6190 -0.4601 36 1 3.8916 0.3186 -0.0115 37 1 0.9122 -0.0008 1.9422 38 1 1.4640 -0.0939 3.6331 39 1 -0.4723 1.4239 3.4560 40 1 0.3791 2.3898 2.2268 41 1 2.8246 3.6165 4.6162 42 1 2.3209 3.6810 2.9101 43 1 3.4976 1.2585 4.3487 44 1 4.3312 2.2730 3.1453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127971280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:42 Heat of formation + Delta-G solvation = -67.245272 kcal Electronic energy + Delta-G solvation = -29666.563689 eV Core-core repulsion = 25692.811638 eV Total energy + Delta-G solvation = -3973.752051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -48.68145 -41.02107 -38.21975 -37.58911 -35.39026 -33.99042 -31.91944 -30.87277 -30.50476 -29.70340 -29.26328 -25.94326 -24.46889 -23.26990 -22.94586 -22.23409 -21.50108 -20.57331 -18.38538 -17.53654 -16.90943 -16.45857 -16.08415 -15.68492 -15.58614 -15.35843 -15.29782 -14.54739 -14.47212 -14.24604 -13.88449 -13.53216 -13.31878 -13.07866 -12.98303 -12.74305 -12.59066 -12.28494 -11.89802 -11.82055 -11.73416 -11.50252 -11.19320 -11.07346 -10.88179 -10.76167 -10.64122 -10.42047 -10.30493 -10.26753 -10.00190 -9.73486 -9.22919 -9.12576 -8.79751 -8.38691 -8.19805 -7.79539 -6.15771 -4.00561 1.36172 1.50816 3.11451 3.19166 3.22530 3.70639 3.82397 4.02718 4.25081 4.47943 4.64321 4.86560 4.97682 5.05876 5.09056 5.16328 5.28500 5.39447 5.52695 5.55952 5.64266 5.69192 5.85176 5.94704 6.04950 6.05039 6.09548 6.18812 6.22221 6.27042 6.33968 6.39002 6.41564 6.42925 6.47451 6.54847 6.64960 6.67243 6.85040 7.15595 7.23934 7.35141 7.57503 7.72142 8.03987 8.48051 9.09159 9.34443 9.86548 10.60817 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010393 B = 0.006884 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.412788 B = 4066.171117 C = 5790.220336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 N -0.435 5.435 4 C -0.296 4.296 5 H 0.097 0.903 6 C 0.033 3.967 7 N -0.880 5.880 8 Si 0.929 3.071 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.457 3.543 13 O -0.582 6.582 14 C -0.030 4.030 15 C -0.075 4.075 16 C -0.088 4.088 17 C -0.160 4.160 18 C 0.088 3.912 19 F -0.147 7.147 20 C -0.149 4.149 21 C -0.074 4.074 22 C -0.167 4.167 23 C 0.063 3.937 24 O -0.390 6.390 25 C 0.054 3.946 26 C -0.119 4.119 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.149 0.851 31 H 0.053 0.947 32 H 0.268 0.732 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -4.973 8.467 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.061 4.061 3 N -0.153 5.153 4 C -0.424 4.424 5 H 0.115 0.885 6 C -0.169 4.169 7 N -0.521 5.521 8 Si 0.755 3.245 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.244 3.756 13 O -0.467 6.467 14 C -0.033 4.033 15 C -0.076 4.076 16 C -0.106 4.106 17 C -0.179 4.179 18 C 0.069 3.931 19 F -0.126 7.126 20 C -0.168 4.168 21 C -0.092 4.092 22 C -0.204 4.204 23 C -0.014 4.014 24 O -0.309 6.309 25 C -0.022 4.022 26 C -0.157 4.157 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.165 0.835 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.174 0.826 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.050 -4.566 8.412 9.629 hybrid contribution 0.018 -0.051 -1.072 1.073 sum 1.067 -4.617 7.340 8.737 Atomic orbital electron populations 1.22017 0.97799 0.99136 1.01767 1.22946 0.93859 0.84696 1.04575 1.43772 1.47863 1.11705 1.11939 1.19614 1.46437 0.91629 0.84767 0.88520 1.25280 0.96875 0.95954 0.98749 1.69394 1.49738 1.08593 1.24397 0.85946 0.79091 0.79344 0.80071 1.19871 1.20899 1.20044 1.19650 0.83122 0.87966 0.84813 1.90495 1.51696 1.20989 1.83493 1.19677 0.94670 0.93070 0.95916 1.19674 0.98312 0.95986 0.93581 1.20765 0.97280 0.93468 0.99066 1.20962 1.01363 1.00140 0.95458 1.17755 0.94449 0.86266 0.94675 1.91461 1.71729 1.54255 1.95107 1.21163 1.00999 0.95629 0.98977 1.21739 0.93259 0.96635 0.97528 1.22915 0.94748 0.99319 1.03454 1.22529 0.95301 0.92049 0.91483 1.87812 1.32669 1.70622 1.39845 1.22747 0.82648 0.95313 1.01530 1.21954 1.00153 0.97339 0.96301 0.94619 0.91480 0.94080 0.83510 0.92866 0.92089 0.85288 0.85213 0.84852 0.82594 0.87252 0.91113 0.89280 0.92607 0.89674 0.90475 0.91490 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.70 37.16 0.32 -2.53 16 2 C 0.06 1.26 2.88 -4.04 -0.01 1.25 16 3 N -0.43 -9.94 1.80 -114.82 -0.21 -10.15 16 4 C -0.30 -7.52 9.00 -14.93 -0.13 -7.66 16 5 H 0.10 2.61 7.40 -52.49 -0.39 2.23 16 6 C 0.03 0.79 4.78 -17.47 -0.08 0.71 16 7 N -0.88 -20.94 9.24 55.50 0.51 -20.43 16 8 Si 0.93 19.70 29.55 -169.99 -5.02 14.68 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 12 C 0.46 10.12 3.78 -10.99 -0.04 10.08 16 13 O -0.58 -14.74 13.81 5.55 0.08 -14.66 16 14 C -0.03 -0.53 0.35 -156.63 -0.05 -0.58 16 15 C -0.07 -1.26 3.56 -104.61 -0.37 -1.63 16 16 C -0.09 -1.23 8.67 -39.59 -0.34 -1.58 16 17 C -0.16 -2.18 10.03 -39.52 -0.40 -2.57 16 18 C 0.09 1.34 7.30 -39.42 -0.29 1.05 16 19 F -0.15 -2.22 17.27 2.25 0.04 -2.18 16 20 C -0.15 -2.46 10.03 -39.52 -0.40 -2.85 16 21 C -0.07 -1.35 7.12 -39.59 -0.28 -1.63 16 22 C -0.17 -2.68 4.29 -26.59 -0.11 -2.80 16 23 C 0.06 1.04 5.99 37.20 0.22 1.26 16 24 O -0.39 -6.69 10.77 -35.23 -0.38 -7.07 16 25 C 0.05 0.91 6.56 37.20 0.24 1.15 16 26 C -0.12 -1.97 4.37 -26.60 -0.12 -2.08 16 27 H 0.03 0.64 6.37 -51.93 -0.33 0.31 16 28 H 0.07 1.44 6.97 -51.93 -0.36 1.07 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.15 3.35 5.08 -52.88 -0.27 3.08 16 31 H 0.05 1.00 2.98 -51.93 -0.15 0.85 16 32 H 0.27 6.16 8.31 -40.82 -0.34 5.83 16 33 H 0.13 1.53 7.05 -52.48 -0.37 1.16 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 36 H 0.16 3.39 5.15 -52.49 -0.27 3.12 16 37 H 0.11 1.81 2.67 -51.93 -0.14 1.67 16 38 H 0.07 1.00 7.54 -51.93 -0.39 0.60 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.06 7.35 -51.93 -0.38 0.68 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.53 6.05 -51.93 -0.31 1.21 16 43 H 0.07 0.94 7.07 -51.93 -0.37 0.58 16 44 H 0.08 1.38 7.94 -51.93 -0.41 0.96 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -26.61 329.62 -7.26 -33.86 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.40 Total: 11.40 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.84 Total: -10.41 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.31 Total: -30.58 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.30 Total: -21.73 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.61 -7.26 -33.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127971280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.382 kcal (2) G-P(sol) polarization free energy of solvation -26.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds