Wall clock time and date at job start Tue Mar 31 2020 12:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46819 * 2 1 4 4 C 1.37106 * 119.99753 * 291.29062 * 3 2 1 5 5 H 1.08001 * 119.99444 * 158.71132 * 4 3 2 6 6 C 1.38946 * 120.00307 * 338.71705 * 4 3 2 7 7 N 1.31416 * 119.99952 * 356.29162 * 6 4 3 8 8 Si 1.86799 * 120.00077 * 176.28802 * 6 4 3 9 9 H 1.48496 * 109.46950 * 59.99961 * 8 6 4 10 10 H 1.48502 * 109.47216 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46868 * 299.99958 * 8 6 4 12 12 C 1.34769 * 120.00366 * 111.29882 * 3 2 1 13 13 O 1.21294 * 120.00640 * 175.86838 * 12 3 2 14 14 C 1.50700 * 119.99981 * 356.14284 * 12 3 2 15 15 C 1.50702 * 109.54324 * 66.15378 * 14 12 3 16 16 C 1.38247 * 119.97541 * 175.99084 * 15 14 12 17 17 C 1.38194 * 120.02620 * 179.77250 * 16 15 14 18 18 C 1.38461 * 119.97279 * 0.50223 * 17 16 15 19 19 F 1.35105 * 120.02403 * 179.76874 * 18 17 16 20 20 C 1.38460 * 119.94841 * 359.75506 * 18 17 16 21 21 C 1.38195 * 119.97584 * 359.97438 * 20 18 17 22 22 C 1.53184 * 109.54269 * 305.89106 * 14 12 3 23 23 C 1.53088 * 109.16058 * 297.11290 * 22 14 12 24 24 O 1.42907 * 109.41516 * 302.38896 * 23 22 14 25 25 C 1.42898 * 114.09658 * 61.15898 * 24 23 22 26 26 C 1.53090 * 109.41782 * 298.84496 * 25 24 23 27 27 H 1.09002 * 109.47485 * 306.60662 * 1 2 3 28 28 H 1.08992 * 109.47394 * 66.60719 * 1 2 3 29 29 H 1.09002 * 109.46965 * 186.61028 * 1 2 3 30 30 H 1.08997 * 109.47011 * 240.00286 * 2 1 3 31 31 H 1.08993 * 109.47534 * 119.99657 * 2 1 3 32 32 H 0.96996 * 120.00231 * 180.02562 * 7 6 4 33 33 H 1.08006 * 119.98607 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.01210 * 180.26232 * 17 16 15 35 35 H 1.07996 * 120.01151 * 179.97438 * 20 18 17 36 36 H 1.07999 * 119.98718 * 180.02562 * 21 20 18 37 37 H 1.09002 * 109.52232 * 57.01785 * 22 14 12 38 38 H 1.09004 * 109.51975 * 177.20686 * 22 14 12 39 39 H 1.08998 * 109.48199 * 182.41140 * 23 22 14 40 40 H 1.09001 * 109.49083 * 62.37757 * 23 22 14 41 41 H 1.09003 * 109.47914 * 178.85652 * 25 24 23 42 42 H 1.09002 * 109.48841 * 58.83360 * 25 24 23 43 43 H 1.09006 * 109.52011 * 297.70268 * 26 25 24 44 44 H 1.08994 * 109.52432 * 177.51490 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 1.8402 2.1713 -1.1064 5 1 1.8725 3.2467 -1.0127 6 6 1.6181 1.5883 -2.3479 7 7 1.6511 0.2807 -2.4752 8 14 1.2726 2.6631 -3.8361 9 1 2.4232 3.5728 -4.0675 10 1 1.0715 1.8045 -5.0309 11 1 0.0475 3.4665 -3.5927 12 6 2.6425 1.8754 1.0874 13 8 3.1130 2.9931 1.0612 14 6 2.7616 1.0369 2.3339 15 6 3.6487 -0.1502 2.0601 16 6 3.9728 -1.0210 3.0838 17 6 4.7823 -2.1125 2.8329 18 6 5.2775 -2.3280 1.5579 19 9 6.0729 -3.3922 1.3125 20 6 4.9566 -1.4522 0.5346 21 6 4.1423 -0.3645 0.7866 22 6 1.3723 0.5530 2.7606 23 6 0.5039 1.7642 3.1106 24 8 1.1380 2.5205 4.1442 25 6 2.4203 3.0387 3.7851 26 6 3.3657 1.8787 3.4620 27 1 -0.3634 0.6128 0.8249 28 1 -0.3634 0.4080 -0.9431 29 1 -0.3633 -1.0209 0.1183 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 1.4965 -0.1263 -3.3420 33 1 3.5897 -0.8505 4.0791 34 1 5.0319 -2.7950 3.6318 35 1 5.3426 -1.6190 -0.4601 36 1 3.8916 0.3186 -0.0115 37 1 0.9122 -0.0008 1.9422 38 1 1.4640 -0.0939 3.6331 39 1 -0.4723 1.4239 3.4560 40 1 0.3791 2.3898 2.2268 41 1 2.8246 3.6165 4.6162 42 1 2.3209 3.6810 2.9101 43 1 3.4976 1.2585 4.3487 44 1 4.3312 2.2730 3.1453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127971280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:40 Heat of formation + Delta-G solvation = -81.069655 kcal Electronic energy + Delta-G solvation = -29667.163159 eV Core-core repulsion = 25692.811638 eV Total energy + Delta-G solvation = -3974.351521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.86720 -42.47912 -39.50489 -39.13704 -37.16810 -35.41513 -33.66117 -32.11134 -31.94963 -31.19733 -30.63314 -27.63113 -25.94715 -24.60604 -24.24235 -23.84889 -22.76245 -22.06764 -19.97206 -18.79161 -18.70623 -17.85471 -17.49706 -17.13159 -16.92589 -16.80664 -16.55298 -16.16332 -15.88677 -15.73276 -15.34049 -14.92640 -14.75446 -14.51849 -14.41983 -14.11598 -13.98540 -13.65610 -13.46559 -13.34116 -13.13292 -12.92532 -12.81394 -12.67090 -12.46023 -12.26940 -12.12323 -11.94488 -11.89628 -11.63124 -11.51038 -11.27531 -11.05778 -10.52609 -10.11061 -10.00989 -9.62627 -9.44164 -8.00659 -5.94208 0.13283 0.30670 1.36372 1.40347 1.48284 2.01808 2.25885 2.59398 2.94387 3.04130 3.14529 3.29082 3.57604 3.64712 3.85529 3.95100 3.99465 4.05809 4.10770 4.35518 4.35676 4.43989 4.49324 4.55390 4.64129 4.75677 4.78756 4.83156 4.90412 4.94483 4.99230 5.03300 5.04286 5.10953 5.14693 5.17117 5.22344 5.34515 5.42469 5.58602 5.65161 5.87330 5.94129 6.20101 6.24208 6.64833 7.22973 7.55493 8.08383 8.70566 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010393 B = 0.006884 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.412788 B = 4066.171117 C = 5790.220336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 N -0.441 5.441 4 C -0.329 4.329 5 H 0.065 0.935 6 C 0.008 3.992 7 N -0.881 5.881 8 Si 0.978 3.022 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.274 1.274 12 C 0.451 3.549 13 O -0.627 6.627 14 C -0.025 4.025 15 C -0.084 4.084 16 C -0.073 4.073 17 C -0.141 4.141 18 C 0.085 3.915 19 F -0.146 7.146 20 C -0.158 4.158 21 C -0.097 4.097 22 C -0.162 4.162 23 C 0.062 3.938 24 O -0.388 6.388 25 C 0.054 3.946 26 C -0.116 4.116 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.270 0.730 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.017 0.983 41 H 0.114 0.886 42 H 0.036 0.964 43 H 0.106 0.894 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 -7.478 11.337 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 N -0.158 5.158 4 C -0.458 4.458 5 H 0.083 0.917 6 C -0.193 4.193 7 N -0.521 5.521 8 Si 0.803 3.197 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.199 1.199 12 C 0.240 3.760 13 O -0.515 6.515 14 C -0.028 4.028 15 C -0.085 4.085 16 C -0.091 4.091 17 C -0.159 4.159 18 C 0.066 3.934 19 F -0.124 7.124 20 C -0.177 4.177 21 C -0.116 4.116 22 C -0.199 4.199 23 C -0.014 4.014 24 O -0.307 6.307 25 C -0.022 4.022 26 C -0.154 4.154 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.147 0.853 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.035 0.965 41 H 0.132 0.868 42 H 0.054 0.946 43 H 0.124 0.876 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.796 -7.107 11.276 13.352 hybrid contribution 0.159 0.734 -1.977 2.115 sum 0.955 -6.373 9.299 11.314 Atomic orbital electron populations 1.21943 0.96777 1.00767 1.00545 1.22836 0.94547 0.83304 1.04517 1.43865 1.48112 1.12250 1.11600 1.19449 1.48804 0.90806 0.86695 0.91689 1.25803 0.96294 0.97085 1.00074 1.69559 1.48859 1.08927 1.24776 0.85221 0.78418 0.78116 0.77951 1.20820 1.19486 1.19910 1.20528 0.81587 0.87829 0.86019 1.90456 1.53224 1.23213 1.84592 1.19637 0.96461 0.93007 0.93694 1.19640 0.98734 0.96365 0.93774 1.21061 0.96272 0.92208 0.99511 1.21356 0.99344 0.99950 0.95298 1.17836 0.94523 0.85930 0.95122 1.91468 1.71708 1.54058 1.95201 1.21116 1.01142 0.95788 0.99666 1.21373 0.95569 0.97116 0.97505 1.22910 0.93088 0.99321 1.04617 1.22593 0.96962 0.91604 0.90262 1.87815 1.32658 1.70684 1.39580 1.22723 0.83070 0.95386 1.01015 1.21983 0.98940 0.97417 0.97034 0.93767 0.94346 0.91286 0.85816 0.90655 0.91895 0.81565 0.81345 0.85277 0.86924 0.87902 0.87353 0.86201 0.96459 0.86837 0.94600 0.87571 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 8.70 71.98 0.63 -4.81 16 2 C 0.07 2.92 2.88 86.38 0.25 3.16 16 3 N -0.44 -21.24 1.80 -635.55 -1.14 -22.39 16 4 C -0.33 -17.86 9.00 84.04 0.76 -17.10 16 5 H 0.07 3.85 7.40 -2.91 -0.02 3.82 16 6 C 0.01 0.42 4.78 84.92 0.41 0.83 16 7 N -0.88 -43.28 9.24 21.66 0.20 -43.08 16 8 Si 0.98 41.84 29.55 68.60 2.03 43.86 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 C 0.45 20.92 3.78 87.66 0.33 21.25 16 13 O -0.63 -34.08 13.81 -3.07 -0.04 -34.12 16 14 C -0.02 -0.85 0.35 -53.55 -0.02 -0.87 16 15 C -0.08 -2.68 3.56 -19.86 -0.07 -2.75 16 16 C -0.07 -1.69 8.67 22.26 0.19 -1.50 16 17 C -0.14 -3.13 10.03 22.31 0.22 -2.90 16 18 C 0.08 2.37 7.30 22.38 0.16 2.53 16 19 F -0.15 -4.03 17.27 44.97 0.78 -3.25 16 20 C -0.16 -5.19 10.03 22.31 0.22 -4.97 16 21 C -0.10 -3.61 7.12 22.26 0.16 -3.45 16 22 C -0.16 -4.77 4.29 30.69 0.13 -4.63 16 23 C 0.06 1.96 5.99 72.01 0.43 2.39 16 24 O -0.39 -12.49 10.77 -148.98 -1.60 -14.10 16 25 C 0.05 1.79 6.56 72.01 0.47 2.26 16 26 C -0.12 -3.59 4.37 30.68 0.13 -3.46 16 27 H 0.04 1.58 6.37 -2.39 -0.02 1.56 16 28 H 0.04 1.66 6.97 -2.39 -0.02 1.65 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.13 5.84 5.08 -4.27 -0.02 5.82 16 31 H 0.08 2.79 2.98 -2.39 -0.01 2.78 16 32 H 0.27 12.64 8.31 -92.71 -0.77 11.87 16 33 H 0.17 2.69 7.05 -2.91 -0.02 2.67 16 34 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.11 5.22 5.15 -2.91 -0.01 5.21 16 37 H 0.10 3.18 2.67 -2.39 -0.01 3.17 16 38 H 0.11 2.42 7.54 -2.39 -0.02 2.41 16 39 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.02 0.67 7.35 -2.39 -0.02 0.65 16 41 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.04 1.49 6.05 -2.39 -0.01 1.47 16 43 H 0.11 2.46 7.07 -2.38 -0.02 2.44 16 44 H 0.06 2.17 7.94 -2.39 -0.02 2.15 16 Total: -1.00 -63.08 329.62 5.66 -57.42 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 1.04 Total: 29.67 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 4.41 Total: -14.01 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.94 Total: -65.47 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -1.65 Total: -48.22 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -63.08 5.66 -57.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127971280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.652 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds