Wall clock time and date at job start Tue Mar 31 2020 12:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47068 * 2 1 4 4 C 1.37093 * 120.00577 * 78.60090 * 3 2 1 5 5 H 1.08005 * 120.00079 * 49.00474 * 4 3 2 6 6 C 1.38951 * 120.00087 * 229.01285 * 4 3 2 7 7 N 1.31414 * 119.99850 * 157.28215 * 6 4 3 8 8 Si 1.86798 * 119.99954 * 337.54970 * 6 4 3 9 9 H 1.48498 * 109.47343 * 275.85381 * 8 6 4 10 10 H 1.48504 * 109.46872 * 35.85355 * 8 6 4 11 11 H 1.48498 * 109.46820 * 155.84968 * 8 6 4 12 12 C 1.34780 * 119.99485 * 258.59932 * 3 2 1 13 13 O 1.21291 * 119.99945 * 181.46065 * 12 3 2 14 14 C 1.50701 * 120.00017 * 1.46794 * 12 3 2 15 15 C 1.50696 * 109.54508 * 294.26163 * 14 12 3 16 16 C 1.38267 * 119.98733 * 307.82538 * 15 14 12 17 17 C 1.38223 * 120.05092 * 179.97438 * 16 15 14 18 18 C 1.38224 * 120.02489 * 359.97438 * 17 16 15 19 19 C 1.38434 * 119.97424 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02576 * 180.02562 * 19 18 17 21 21 C 1.38178 * 119.98631 * 127.53884 * 15 14 12 22 22 C 1.53181 * 109.54164 * 174.08867 * 14 12 3 23 23 C 1.53292 * 109.06146 * 297.02688 * 22 14 12 24 24 O 1.42894 * 109.46172 * 302.44739 * 23 22 14 25 25 C 1.42900 * 114.10064 * 61.15785 * 24 23 22 26 26 C 1.53095 * 109.41598 * 298.84150 * 25 24 23 27 27 H 1.09006 * 109.47359 * 294.79592 * 1 2 3 28 28 H 1.09000 * 109.47583 * 54.79417 * 1 2 3 29 29 H 1.09004 * 109.47272 * 174.79962 * 1 2 3 30 30 H 1.08999 * 109.47332 * 239.99309 * 2 1 3 31 31 H 1.09007 * 109.46927 * 119.99399 * 2 1 3 32 32 H 0.96996 * 119.99749 * 179.97438 * 7 6 4 33 33 H 1.07991 * 119.97570 * 0.02562 * 16 15 14 34 34 H 1.07999 * 119.98895 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.01236 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.01337 * 0.02562 * 21 15 14 37 37 H 1.08992 * 109.52730 * 57.01732 * 22 14 12 38 38 H 1.09004 * 109.52237 * 177.20967 * 22 14 12 39 39 H 1.08999 * 109.45431 * 182.44955 * 23 22 14 40 40 H 1.08998 * 109.46335 * 62.44957 * 23 22 14 41 41 H 1.08999 * 109.48448 * 178.86115 * 25 24 23 42 42 H 1.08996 * 109.48676 * 58.82961 * 25 24 23 43 43 H 1.09000 * 109.52487 * 297.70259 * 26 25 24 44 44 H 1.09001 * 109.57390 * 177.54406 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0256 2.1058 1.1638 5 1 2.4466 1.6798 2.0625 6 6 1.4912 3.3882 1.1871 7 7 1.0849 3.9101 2.3227 8 14 1.3433 4.3674 -0.3968 9 1 2.6336 5.0445 -0.6825 10 1 1.0068 3.4508 -1.5157 11 1 0.2717 5.3851 -0.2512 12 6 2.4604 1.9396 -1.1443 13 8 2.8894 3.0741 -1.1392 14 6 2.4216 1.1543 -2.4300 15 6 3.3686 -0.0141 -2.3359 16 6 4.6835 0.1905 -1.9603 17 6 5.5531 -0.8803 -1.8730 18 6 5.1089 -2.1572 -2.1607 19 6 3.7927 -2.3633 -2.5369 20 9 3.3573 -3.6110 -2.8178 21 6 2.9211 -1.2903 -2.6192 22 6 2.8371 2.0580 -3.5950 23 6 1.8222 3.1989 -3.7301 24 8 0.5159 2.6535 -3.9251 25 6 0.0572 1.8374 -2.8455 26 6 0.9989 0.6424 -2.6750 27 1 -0.3634 0.4310 0.9330 28 1 -0.3634 0.5924 -0.8397 29 1 -0.3634 -1.0235 -0.0931 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.7122 4.8055 2.3390 33 1 5.0311 1.1876 -1.7341 34 1 6.5800 -0.7193 -1.5799 35 1 5.7886 -2.9937 -2.0929 36 1 1.8930 -1.4505 -2.9085 37 1 3.8275 2.4697 -3.4014 38 1 2.8568 1.4773 -4.5173 39 1 2.0875 3.8214 -4.5847 40 1 1.8322 3.8032 -2.8231 41 1 -0.9490 1.4791 -3.0626 42 1 0.0439 2.4237 -1.9267 43 1 0.9816 0.0332 -3.5787 44 1 0.6763 0.0417 -1.8246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127971509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:50 Heat of formation + Delta-G solvation = -34.616824 kcal Electronic energy + Delta-G solvation = -30234.163760 eV Core-core repulsion = 26261.826586 eV Total energy + Delta-G solvation = -3972.337175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.89604 -41.43906 -38.63105 -37.76498 -35.71666 -34.30167 -32.28574 -31.15785 -30.46129 -30.03523 -29.64211 -26.20558 -24.44868 -23.85641 -23.00598 -22.21716 -21.71839 -20.86058 -18.94114 -17.87975 -17.58568 -16.43984 -16.20640 -15.98267 -15.65830 -15.63465 -15.49014 -15.34684 -14.97016 -14.33339 -13.95789 -13.84582 -13.69989 -13.38377 -13.04682 -12.89198 -12.66098 -12.48012 -12.28589 -12.00914 -11.81756 -11.77677 -11.69455 -11.23222 -11.01627 -10.96232 -10.74583 -10.59333 -10.22720 -10.19954 -9.87382 -9.43823 -9.33297 -8.84347 -8.63204 -8.49238 -8.08779 -7.32766 -6.25140 -4.17259 1.16037 1.19017 3.00140 3.49204 3.56429 3.74161 4.01535 4.23081 4.26183 4.29808 4.57003 4.63602 4.78585 4.93795 4.99850 5.07959 5.12642 5.24079 5.30469 5.37235 5.38036 5.50750 5.62502 5.66929 5.77533 5.84983 5.88182 5.92496 5.96023 5.99501 6.06811 6.10662 6.12488 6.20293 6.23831 6.30896 6.37106 6.42127 6.53367 6.58919 6.78173 6.88989 7.58232 7.67833 7.89507 8.58515 8.69181 9.26643 9.59051 10.68393 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.006605 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.235623 B = 4237.921526 C = 4722.984094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 N -0.430 5.430 4 C -0.357 4.357 5 H 0.093 0.907 6 C 0.058 3.942 7 N -0.858 5.858 8 Si 1.002 2.998 9 H -0.294 1.294 10 H -0.278 1.278 11 H -0.356 1.356 12 C 0.460 3.540 13 O -0.545 6.545 14 C -0.033 4.033 15 C -0.028 4.028 16 C -0.114 4.114 17 C -0.086 4.086 18 C -0.161 4.161 19 C 0.096 3.904 20 F -0.143 7.143 21 C -0.157 4.157 22 C -0.117 4.117 23 C 0.039 3.961 24 O -0.385 6.385 25 C 0.041 3.959 26 C -0.182 4.182 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.273 0.727 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -10.942 -10.675 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.041 4.041 3 N -0.146 5.146 4 C -0.482 4.482 5 H 0.111 0.889 6 C -0.151 4.151 7 N -0.490 5.490 8 Si 0.853 3.147 9 H -0.226 1.226 10 H -0.211 1.211 11 H -0.293 1.293 12 C 0.252 3.748 13 O -0.437 6.437 14 C -0.036 4.036 15 C -0.029 4.029 16 C -0.132 4.132 17 C -0.104 4.104 18 C -0.179 4.179 19 C 0.077 3.923 20 F -0.121 7.121 21 C -0.176 4.176 22 C -0.155 4.155 23 C -0.037 4.037 24 O -0.304 6.304 25 C -0.035 4.035 26 C -0.219 4.219 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.004 -10.357 -10.591 15.115 hybrid contribution 0.162 0.088 -0.292 0.345 sum 3.165 -10.269 -10.884 15.295 Atomic orbital electron populations 1.22404 0.96454 1.00982 1.03760 1.22068 0.94399 0.85412 1.02175 1.43639 1.51910 1.11528 1.07480 1.18752 1.42671 0.99628 0.87159 0.88938 1.25951 0.91291 0.98068 0.99782 1.69851 1.34251 1.16461 1.28475 0.84447 0.74016 0.77090 0.79114 1.22582 1.21080 1.29349 1.20019 0.81657 0.88204 0.84937 1.89359 1.51720 1.18186 1.84398 1.19706 0.94510 0.93440 0.95932 1.19458 0.94130 0.92867 0.96397 1.21211 0.92860 1.00167 0.98983 1.20987 1.00029 0.91428 0.97935 1.21101 0.94437 0.98690 1.03717 1.17606 0.93288 0.79367 1.02020 1.91485 1.90197 1.39072 1.91380 1.21121 1.00668 0.91409 1.04373 1.21964 1.00753 0.96922 0.95888 1.23068 0.81758 0.95313 1.03573 1.87805 1.32821 1.66888 1.42874 1.22981 0.96539 0.91325 0.92675 1.23200 0.94047 1.00133 1.04540 0.90905 0.91779 0.92571 0.90288 0.91403 0.91754 0.84835 0.84983 0.85012 0.84172 0.90033 0.91416 0.89710 0.89355 0.89424 0.90020 0.90789 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 8.91 37.16 0.33 -2.52 16 2 C 0.08 1.47 5.34 -4.04 -0.02 1.45 16 3 N -0.43 -9.47 2.50 -114.81 -0.29 -9.76 16 4 C -0.36 -9.54 9.69 -14.93 -0.14 -9.69 16 5 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 6 C 0.06 1.65 5.50 -17.47 -0.10 1.55 16 7 N -0.86 -25.28 13.96 55.50 0.77 -24.50 16 8 Si 1.00 26.10 21.90 -169.99 -3.72 22.38 16 9 H -0.29 -8.26 6.69 56.52 0.38 -7.88 16 10 H -0.28 -6.39 0.68 56.52 0.04 -6.35 16 11 H -0.36 -9.62 7.11 56.52 0.40 -9.22 16 12 C 0.46 9.74 2.85 -10.98 -0.03 9.71 16 13 O -0.54 -13.32 8.18 5.55 0.05 -13.27 16 14 C -0.03 -0.55 0.35 -156.63 -0.06 -0.60 16 15 C -0.03 -0.42 3.41 -104.64 -0.36 -0.77 16 16 C -0.11 -1.67 8.93 -39.58 -0.35 -2.02 16 17 C -0.09 -1.03 10.04 -39.59 -0.40 -1.43 16 18 C -0.16 -1.87 10.03 -39.51 -0.40 -2.27 16 19 C 0.10 1.24 7.30 -39.42 -0.29 0.95 16 20 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 21 C -0.16 -2.09 7.41 -39.51 -0.29 -2.38 16 22 C -0.12 -1.91 4.42 -26.49 -0.12 -2.03 16 23 C 0.04 0.69 6.42 37.31 0.24 0.93 16 24 O -0.38 -6.95 10.77 -35.23 -0.38 -7.33 16 25 C 0.04 0.69 5.34 37.21 0.20 0.89 16 26 C -0.18 -2.77 3.07 -26.59 -0.08 -2.85 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.01 4.69 -51.93 -0.24 0.77 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.23 2.38 -51.93 -0.12 1.11 16 31 H 0.07 1.21 8.13 -51.92 -0.42 0.79 16 32 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.13 2.10 7.83 -52.49 -0.41 1.69 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.14 1.68 5.90 -52.49 -0.31 1.37 16 37 H 0.08 1.33 7.82 -51.93 -0.41 0.92 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.09 1.84 3.07 -51.93 -0.16 1.68 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.62 4.34 -51.93 -0.23 1.40 16 43 H 0.07 0.98 6.98 -51.93 -0.36 0.62 16 44 H 0.11 1.65 2.21 -51.93 -0.11 1.53 16 LS Contribution 314.61 15.07 4.74 4.74 Total: -1.00 -31.20 314.61 -6.33 -37.53 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.68 Total: 3.10 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.86 Total: -11.09 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.49 Total: -34.26 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.33 Total: -20.60 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -3.72 Total: 22.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.20 -6.33 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127971509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.917 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds