Wall clock time and date at job start Tue Mar 31 2020 12:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47068 * 2 1 4 4 C 1.37093 * 120.00577 * 78.60090 * 3 2 1 5 5 H 1.08005 * 120.00079 * 49.00474 * 4 3 2 6 6 C 1.38951 * 120.00087 * 229.01285 * 4 3 2 7 7 N 1.31414 * 119.99850 * 157.28215 * 6 4 3 8 8 Si 1.86798 * 119.99954 * 337.54970 * 6 4 3 9 9 H 1.48498 * 109.47343 * 275.85381 * 8 6 4 10 10 H 1.48504 * 109.46872 * 35.85355 * 8 6 4 11 11 H 1.48498 * 109.46820 * 155.84968 * 8 6 4 12 12 C 1.34780 * 119.99485 * 258.59932 * 3 2 1 13 13 O 1.21291 * 119.99945 * 181.46065 * 12 3 2 14 14 C 1.50701 * 120.00017 * 1.46794 * 12 3 2 15 15 C 1.50696 * 109.54508 * 294.26163 * 14 12 3 16 16 C 1.38267 * 119.98733 * 307.82538 * 15 14 12 17 17 C 1.38223 * 120.05092 * 179.97438 * 16 15 14 18 18 C 1.38224 * 120.02489 * 359.97438 * 17 16 15 19 19 C 1.38434 * 119.97424 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02576 * 180.02562 * 19 18 17 21 21 C 1.38178 * 119.98631 * 127.53884 * 15 14 12 22 22 C 1.53181 * 109.54164 * 174.08867 * 14 12 3 23 23 C 1.53292 * 109.06146 * 297.02688 * 22 14 12 24 24 O 1.42894 * 109.46172 * 302.44739 * 23 22 14 25 25 C 1.42900 * 114.10064 * 61.15785 * 24 23 22 26 26 C 1.53095 * 109.41598 * 298.84150 * 25 24 23 27 27 H 1.09006 * 109.47359 * 294.79592 * 1 2 3 28 28 H 1.09000 * 109.47583 * 54.79417 * 1 2 3 29 29 H 1.09004 * 109.47272 * 174.79962 * 1 2 3 30 30 H 1.08999 * 109.47332 * 239.99309 * 2 1 3 31 31 H 1.09007 * 109.46927 * 119.99399 * 2 1 3 32 32 H 0.96996 * 119.99749 * 179.97438 * 7 6 4 33 33 H 1.07991 * 119.97570 * 0.02562 * 16 15 14 34 34 H 1.07999 * 119.98895 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.01236 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.01337 * 0.02562 * 21 15 14 37 37 H 1.08992 * 109.52730 * 57.01732 * 22 14 12 38 38 H 1.09004 * 109.52237 * 177.20967 * 22 14 12 39 39 H 1.08999 * 109.45431 * 182.44955 * 23 22 14 40 40 H 1.08998 * 109.46335 * 62.44957 * 23 22 14 41 41 H 1.08999 * 109.48448 * 178.86115 * 25 24 23 42 42 H 1.08996 * 109.48676 * 58.82961 * 25 24 23 43 43 H 1.09000 * 109.52487 * 297.70259 * 26 25 24 44 44 H 1.09001 * 109.57390 * 177.54406 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0256 2.1058 1.1638 5 1 2.4466 1.6798 2.0625 6 6 1.4912 3.3882 1.1871 7 7 1.0849 3.9101 2.3227 8 14 1.3433 4.3674 -0.3968 9 1 2.6336 5.0445 -0.6825 10 1 1.0068 3.4508 -1.5157 11 1 0.2717 5.3851 -0.2512 12 6 2.4604 1.9396 -1.1443 13 8 2.8894 3.0741 -1.1392 14 6 2.4216 1.1543 -2.4300 15 6 3.3686 -0.0141 -2.3359 16 6 4.6835 0.1905 -1.9603 17 6 5.5531 -0.8803 -1.8730 18 6 5.1089 -2.1572 -2.1607 19 6 3.7927 -2.3633 -2.5369 20 9 3.3573 -3.6110 -2.8178 21 6 2.9211 -1.2903 -2.6192 22 6 2.8371 2.0580 -3.5950 23 6 1.8222 3.1989 -3.7301 24 8 0.5159 2.6535 -3.9251 25 6 0.0572 1.8374 -2.8455 26 6 0.9989 0.6424 -2.6750 27 1 -0.3634 0.4310 0.9330 28 1 -0.3634 0.5924 -0.8397 29 1 -0.3634 -1.0235 -0.0931 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.7122 4.8055 2.3390 33 1 5.0311 1.1876 -1.7341 34 1 6.5800 -0.7193 -1.5799 35 1 5.7886 -2.9937 -2.0929 36 1 1.8930 -1.4505 -2.9085 37 1 3.8275 2.4697 -3.4014 38 1 2.8568 1.4773 -4.5173 39 1 2.0875 3.8214 -4.5847 40 1 1.8322 3.8032 -2.8231 41 1 -0.9490 1.4791 -3.0626 42 1 0.0439 2.4237 -1.9267 43 1 0.9816 0.0332 -3.5787 44 1 0.6763 0.0417 -1.8246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127971509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:48 Heat of formation + Delta-G solvation = -55.384197 kcal Electronic energy + Delta-G solvation = -30235.064301 eV Core-core repulsion = 26261.826586 eV Total energy + Delta-G solvation = -3973.237716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.85694 -42.90298 -39.85292 -39.26327 -37.40561 -35.70568 -34.25759 -32.53287 -31.61646 -31.26485 -30.95015 -27.87851 -26.01416 -25.08274 -24.49375 -23.36018 -22.85048 -22.41694 -20.66607 -19.58034 -18.77627 -17.91504 -17.36780 -17.21219 -17.13976 -16.95429 -16.78322 -16.56102 -16.47498 -15.87268 -15.58529 -15.35592 -14.85754 -14.77749 -14.53370 -14.32370 -14.10387 -13.86854 -13.62308 -13.41751 -13.28109 -13.03726 -12.94837 -12.76006 -12.51908 -12.19967 -12.16885 -11.99889 -11.97496 -11.67211 -11.46479 -11.28459 -10.79131 -10.47605 -10.06961 -9.80518 -9.62540 -9.20193 -8.43702 -6.34239 0.12591 0.19667 1.16001 1.37305 1.57645 2.05026 2.48894 2.59804 2.65712 2.92483 2.95259 3.20135 3.43946 3.61356 3.66224 3.89605 3.97247 4.00218 4.09025 4.12381 4.18410 4.31718 4.39012 4.41697 4.49237 4.52245 4.62617 4.70053 4.72689 4.81265 4.85417 4.89516 4.98553 5.02821 5.03650 5.05893 5.11605 5.17948 5.33754 5.45028 5.50395 5.59016 5.80513 5.89735 6.21794 6.64209 6.75530 7.20889 7.69819 8.51777 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.006605 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.235623 B = 4237.921526 C = 4722.984094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 N -0.444 5.444 4 C -0.347 4.347 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.900 5.900 8 Si 1.029 2.971 9 H -0.333 1.333 10 H -0.226 1.226 11 H -0.378 1.378 12 C 0.466 3.534 13 O -0.577 6.577 14 C -0.026 4.026 15 C -0.044 4.044 16 C -0.133 4.133 17 C -0.081 4.081 18 C -0.150 4.150 19 C 0.094 3.906 20 F -0.140 7.140 21 C -0.153 4.153 22 C -0.115 4.115 23 C 0.034 3.966 24 O -0.387 6.387 25 C 0.035 3.965 26 C -0.179 4.179 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.271 0.729 33 H 0.111 0.889 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.121 0.879 42 H 0.044 0.956 43 H 0.110 0.890 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -14.886 -13.795 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.043 4.043 3 N -0.160 5.160 4 C -0.474 4.474 5 H 0.082 0.918 6 C -0.185 4.185 7 N -0.535 5.535 8 Si 0.881 3.119 9 H -0.267 1.267 10 H -0.155 1.155 11 H -0.319 1.319 12 C 0.259 3.741 13 O -0.471 6.471 14 C -0.029 4.029 15 C -0.045 4.045 16 C -0.151 4.151 17 C -0.099 4.099 18 C -0.168 4.168 19 C 0.075 3.925 20 F -0.119 7.119 21 C -0.171 4.171 22 C -0.153 4.153 23 C -0.043 4.043 24 O -0.306 6.306 25 C -0.041 4.041 26 C -0.215 4.215 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.139 0.861 42 H 0.062 0.938 43 H 0.129 0.871 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.996 -14.364 -13.732 20.097 hybrid contribution 0.356 1.185 0.645 1.395 sum 3.351 -13.179 -13.087 18.873 Atomic orbital electron populations 1.22395 0.94833 1.03629 1.02379 1.22321 0.95773 0.82699 1.03479 1.43805 1.52957 1.12958 1.06307 1.18560 1.41217 0.99486 0.88159 0.91753 1.26471 0.91919 0.99092 1.01029 1.69909 1.37087 1.16851 1.29683 0.84039 0.71739 0.76391 0.79773 1.26728 1.15520 1.31878 1.20870 0.79196 0.87714 0.86285 1.89269 1.52619 1.20152 1.85061 1.19635 0.96710 0.93798 0.92780 1.19239 0.93753 0.92780 0.98700 1.21207 0.93620 1.00080 1.00189 1.21213 1.00776 0.90909 0.97014 1.21429 0.94538 0.99165 1.01715 1.17692 0.93628 0.79312 1.01847 1.91501 1.90215 1.38864 1.91327 1.21199 1.01691 0.90462 1.03758 1.21980 0.99766 0.96617 0.96898 1.23078 0.82482 0.95888 1.02813 1.87817 1.32755 1.67112 1.42943 1.23087 0.98939 0.91314 0.90765 1.23250 0.91879 0.99766 1.06631 0.93877 0.91380 0.88096 0.87354 0.91755 0.92012 0.87109 0.82686 0.82244 0.82223 0.90798 0.88354 0.87375 0.93169 0.86080 0.93800 0.87126 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 8.91 71.98 0.64 -4.52 16 2 C 0.08 2.65 5.34 86.38 0.46 3.12 16 3 N -0.44 -19.61 2.50 -635.53 -1.59 -21.20 16 4 C -0.35 -19.34 9.69 84.04 0.81 -18.52 16 5 H 0.06 3.90 8.06 -2.91 -0.02 3.87 16 6 C 0.02 1.14 5.50 84.93 0.47 1.60 16 7 N -0.90 -56.14 13.96 21.66 0.30 -55.84 16 8 Si 1.03 56.21 21.90 68.60 1.50 57.71 16 9 H -0.33 -19.97 6.69 99.48 0.67 -19.31 16 10 H -0.23 -10.52 0.68 99.48 0.07 -10.45 16 11 H -0.38 -21.62 7.11 99.48 0.71 -20.91 16 12 C 0.47 19.61 2.85 87.66 0.25 19.86 16 13 O -0.58 -29.00 8.18 -3.06 -0.03 -29.03 16 14 C -0.03 -0.81 0.35 -53.55 -0.02 -0.83 16 15 C -0.04 -1.17 3.41 -19.87 -0.07 -1.24 16 16 C -0.13 -3.60 8.93 22.27 0.20 -3.40 16 17 C -0.08 -1.69 10.04 22.26 0.22 -1.46 16 18 C -0.15 -2.80 10.03 22.31 0.22 -2.57 16 19 C 0.09 1.96 7.30 22.37 0.16 2.12 16 20 F -0.14 -2.92 17.27 44.97 0.78 -2.15 16 21 C -0.15 -3.31 7.41 22.31 0.17 -3.15 16 22 C -0.11 -3.44 4.42 30.75 0.14 -3.30 16 23 C 0.03 1.13 6.42 72.08 0.46 1.60 16 24 O -0.39 -12.78 10.77 -148.98 -1.60 -14.39 16 25 C 0.03 1.07 5.34 72.01 0.38 1.45 16 26 C -0.18 -4.65 3.07 30.69 0.09 -4.55 16 27 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.07 1.96 4.69 -2.39 -0.01 1.94 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.11 2.99 2.38 -2.39 -0.01 2.99 16 31 H 0.06 2.20 8.13 -2.38 -0.02 2.18 16 32 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 33 H 0.11 3.48 7.83 -2.92 -0.02 3.46 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.16 2.80 5.90 -2.91 -0.02 2.79 16 37 H 0.07 2.33 7.82 -2.39 -0.02 2.31 16 38 H 0.10 2.39 8.14 -2.38 -0.02 2.38 16 39 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.05 2.09 3.07 -2.39 -0.01 2.08 16 41 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.04 1.68 4.34 -2.39 -0.01 1.67 16 43 H 0.11 2.20 6.98 -2.39 -0.02 2.18 16 44 H 0.12 2.97 2.21 -2.39 -0.01 2.96 16 Total: -1.00 -73.39 314.61 4.33 -69.06 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.37 Total: 9.65 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 4.60 Total: -13.80 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.29 Total: -77.05 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.63 Total: -43.42 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 56.21 SS G_CDS: 1.50 Total: 57.71 kcal Total: -73.39 4.33 -69.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127971509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.672 kcal (2) G-P(sol) polarization free energy of solvation -73.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds