Wall clock time and date at job start Tue Mar 31 2020 12:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47430 * 2 1 4 4 C 1.36933 * 119.99840 * 265.60738 * 3 2 1 5 5 H 1.07998 * 120.00392 * 316.49143 * 4 3 2 6 6 C 1.38810 * 120.00075 * 136.48895 * 4 3 2 7 7 N 1.31623 * 119.99812 * 352.42608 * 6 4 3 8 8 Si 1.86797 * 120.00385 * 172.42425 * 6 4 3 9 9 H 1.48499 * 109.47049 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47217 * 120.00239 * 8 6 4 11 11 H 1.48502 * 109.47435 * 240.00149 * 8 6 4 12 12 C 1.46500 * 120.00031 * 85.60491 * 3 2 1 13 13 C 1.50694 * 109.46959 * 89.99862 * 12 3 2 14 14 C 1.39817 * 126.08877 * 269.68920 * 13 12 3 15 15 C 1.50703 * 125.85488 * 0.02587 * 14 13 12 16 16 N 1.30828 * 108.28799 * 179.85706 * 14 13 12 17 17 N 1.40073 * 108.33805 * 0.40583 * 16 14 13 18 18 C 1.46503 * 126.03460 * 179.76321 * 17 16 14 19 19 C 1.35139 * 107.92623 * 359.74073 * 17 16 14 20 20 O 1.35757 * 126.19098 * 179.97438 * 19 17 16 21 21 C 1.42901 * 116.99879 * 276.98895 * 20 19 17 22 22 C 1.52999 * 109.46951 * 180.80594 * 21 20 19 23 23 F 1.39904 * 109.47366 * 60.00100 * 22 21 20 24 24 F 1.39908 * 109.46788 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.47140 * 299.99427 * 22 21 20 26 26 H 1.08997 * 109.47700 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47029 * 300.00081 * 1 2 3 28 28 H 1.08997 * 109.47269 * 59.99697 * 1 2 3 29 29 H 1.09008 * 109.47029 * 239.99919 * 2 1 3 30 30 H 1.08997 * 109.47269 * 120.00302 * 2 1 3 31 31 H 0.97007 * 120.00145 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47042 * 210.00326 * 12 3 2 33 33 H 1.09007 * 109.46779 * 330.00411 * 12 3 2 34 34 H 1.09002 * 109.47306 * 89.99949 * 15 14 13 35 35 H 1.08996 * 109.46891 * 209.99786 * 15 14 13 36 36 H 1.09003 * 109.47052 * 329.99675 * 15 14 13 37 37 H 1.08997 * 109.47071 * 274.63871 * 18 17 16 38 38 H 1.08995 * 109.47436 * 34.64063 * 18 17 16 39 39 H 1.09003 * 109.46811 * 154.63821 * 18 17 16 40 40 H 1.09000 * 109.46982 * 300.80465 * 21 20 19 41 41 H 1.08994 * 109.47219 * 60.80310 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3323 1.9964 -1.1824 5 1 2.8900 1.4625 -1.9376 6 6 1.9336 3.3063 -1.4105 7 7 1.1296 3.9072 -0.5591 8 14 2.5381 4.2163 -2.9257 9 1 3.4238 3.3254 -3.7176 10 1 1.3757 4.6228 -3.7556 11 1 3.2950 5.4240 -2.5087 12 6 2.1709 2.1042 1.2650 13 6 3.5588 1.8798 1.8076 14 6 3.9489 0.8526 2.6722 15 6 3.0517 -0.2252 3.2240 16 7 5.2271 0.9855 2.9172 17 7 5.6943 2.1091 2.2235 18 6 7.0692 2.6151 2.2287 19 6 4.6530 2.6437 1.5481 20 8 4.6924 3.7446 0.7547 21 6 4.5899 5.0146 1.4018 22 6 4.6328 6.1267 0.3519 23 9 3.5650 5.9693 -0.5382 24 9 4.5318 7.3701 0.9854 25 9 5.8402 6.0579 -0.3513 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.8512 4.8228 -0.7183 32 1 2.0148 3.1695 1.0957 33 1 1.4366 1.7389 1.9831 34 1 3.0550 -1.0814 2.5495 35 1 3.4148 -0.5335 4.2043 36 1 2.0362 0.1599 3.3174 37 1 7.2124 3.2692 3.0887 38 1 7.7643 1.7777 2.2894 39 1 7.2539 3.1747 1.3117 40 1 3.6491 5.0683 1.9497 41 1 5.4217 5.1372 2.0953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130853308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:43 Heat of formation + Delta-G solvation = -79.967354 kcal Electronic energy + Delta-G solvation = -29832.109152 eV Core-core repulsion = 25335.868652 eV Total energy + Delta-G solvation = -4496.240500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.141 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -49.83215 -47.44213 -47.19477 -40.95411 -37.82804 -35.84491 -33.42760 -31.64327 -30.73026 -29.53027 -29.23472 -27.97875 -25.90400 -24.33600 -23.25448 -23.01889 -20.74966 -20.02847 -19.20647 -18.34943 -18.22276 -17.65367 -17.02641 -16.45019 -15.58357 -15.27807 -14.64241 -14.57762 -14.28613 -14.02224 -13.90756 -13.80835 -13.72275 -13.61557 -13.38525 -13.29456 -13.10586 -13.03013 -12.72335 -12.41224 -12.21775 -12.02741 -11.71439 -11.53076 -11.37494 -11.06135 -10.89503 -10.58872 -10.48014 -10.23915 -10.07836 -9.93319 -9.58555 -9.48826 -8.62190 -8.34433 -7.68161 -6.35162 -5.62342 -3.30274 1.90938 2.57183 2.88856 3.18633 3.47358 3.54727 3.57026 3.74961 4.03647 4.22619 4.62902 4.67255 4.81547 5.01246 5.23437 5.26725 5.36130 5.51617 5.54710 5.58387 5.78051 5.97419 6.01887 6.12735 6.23755 6.36604 6.48842 6.54212 6.57314 6.72462 6.76774 7.06316 7.08599 7.22396 7.37278 7.77642 7.89230 7.97877 8.16368 8.72677 9.36731 9.94104 10.54540 11.36154 Molecular weight = 321.14amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.008028 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.998757 B = 3486.871787 C = 5423.071688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 N -0.573 5.573 4 C -0.248 4.248 5 H 0.050 0.950 6 C 0.034 3.966 7 N -0.888 5.888 8 Si 0.882 3.118 9 H -0.283 1.283 10 H -0.296 1.296 11 H -0.267 1.267 12 C 0.209 3.791 13 C -0.196 4.196 14 C 0.075 3.925 15 C -0.067 4.067 16 N -0.289 5.289 17 N -0.394 5.394 18 C 0.102 3.898 19 C 0.239 3.761 20 O -0.265 6.265 21 C 0.018 3.982 22 C 0.457 3.543 23 F -0.146 7.146 24 F -0.182 7.182 25 F -0.182 7.182 26 H 0.028 0.972 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.252 0.748 32 H 0.109 0.891 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.978 0.873 8.095 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.016 3.984 3 N -0.293 5.293 4 C -0.378 4.378 5 H 0.068 0.932 6 C -0.166 4.166 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.209 1.209 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.082 3.918 13 C -0.210 4.210 14 C -0.090 4.090 15 C -0.125 4.125 16 N -0.116 5.116 17 N -0.188 5.188 18 C -0.040 4.040 19 C 0.073 3.927 20 O -0.174 6.174 21 C -0.060 4.060 22 C 0.403 3.597 23 F -0.127 7.127 24 F -0.164 7.164 25 F -0.164 7.164 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.008 0.733 8.371 11.608 hybrid contribution -0.035 1.219 -1.348 1.817 sum 7.973 1.952 7.023 10.803 Atomic orbital electron populations 1.22266 0.99819 0.98158 1.01793 1.20907 0.91743 0.87665 0.98064 1.43679 1.73837 1.09867 1.01894 1.18946 1.28485 0.96474 0.93909 0.93194 1.25161 0.95930 0.98604 0.96937 1.69744 1.34727 1.12517 1.36107 0.86710 0.78146 0.80761 0.83136 1.20897 1.22335 1.19296 1.19454 0.84887 1.01893 0.85546 1.21412 0.99773 0.97682 1.02179 1.22033 0.91827 0.97394 0.97745 1.20154 0.97328 0.94996 1.00051 1.77212 1.12151 1.03712 1.18498 1.48770 1.08204 1.23313 1.38525 1.21708 0.79608 0.99960 1.02689 1.18547 0.87865 0.90141 0.96122 1.86308 1.92737 1.09749 1.28623 1.23754 1.05642 0.83461 0.93094 1.20144 0.74936 0.82059 0.82555 1.93476 1.55417 1.95095 1.68759 1.93176 1.96050 1.44876 1.82296 1.93175 1.46127 1.96329 1.80765 0.95299 0.93869 0.92785 0.94212 0.95021 0.93756 0.87374 0.95013 0.90675 0.91657 0.90296 0.91641 0.89742 0.89724 0.87581 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.24 37.16 0.38 -2.76 16 2 C 0.14 2.98 6.39 -4.04 -0.03 2.96 16 3 N -0.57 -13.88 2.39 -174.61 -0.42 -14.30 16 4 C -0.25 -6.70 9.45 -15.06 -0.14 -6.84 16 5 H 0.05 1.42 7.84 -52.49 -0.41 1.01 16 6 C 0.03 0.91 5.23 -17.43 -0.09 0.82 16 7 N -0.89 -24.03 11.09 55.49 0.62 -23.41 16 8 Si 0.88 21.92 28.30 -169.99 -4.81 17.11 16 9 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.46 5.13 56.52 0.29 -6.17 16 12 C 0.21 4.73 5.56 -5.20 -0.03 4.70 16 13 C -0.20 -4.05 5.70 -104.86 -0.60 -4.65 16 14 C 0.08 1.38 7.21 -82.43 -0.59 0.79 16 15 C -0.07 -0.96 9.41 36.01 0.34 -0.63 16 16 N -0.29 -5.31 12.57 33.66 0.42 -4.89 16 17 N -0.39 -6.92 4.02 -68.28 -0.27 -7.19 16 18 C 0.10 1.28 11.44 59.85 0.68 1.97 16 19 C 0.24 4.74 6.93 -16.92 -0.12 4.63 16 20 O -0.27 -5.29 9.91 -18.98 -0.19 -5.48 16 21 C 0.02 0.29 6.02 37.16 0.22 0.52 16 22 C 0.46 7.75 3.32 37.16 0.12 7.88 16 23 F -0.15 -3.07 13.84 2.25 0.03 -3.04 16 24 F -0.18 -2.75 17.32 2.25 0.04 -2.71 16 25 F -0.18 -3.11 17.26 2.25 0.04 -3.07 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.84 8.00 -51.92 -0.42 0.43 16 30 H 0.03 0.59 6.35 -51.93 -0.33 0.27 16 31 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.11 2.74 5.42 -51.93 -0.28 2.46 16 33 H 0.03 0.68 7.18 -51.93 -0.37 0.30 16 34 H 0.07 1.05 7.35 -51.93 -0.38 0.67 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.09 7.25 -51.93 -0.38 0.72 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 40 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -30.53 353.79 -4.67 -35.20 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.61 Total: -2.92 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 0.15 Total: 9.38 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.35 Total: -49.79 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.19 Total: -5.48 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 0.11 Total: -8.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.81 Total: 17.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.53 -4.67 -35.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130853308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.767 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds