Wall clock time and date at job start Tue Mar 31 2020 12:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47430 * 2 1 4 4 C 1.36933 * 119.99840 * 265.60738 * 3 2 1 5 5 H 1.07998 * 120.00392 * 316.49143 * 4 3 2 6 6 C 1.38810 * 120.00075 * 136.48895 * 4 3 2 7 7 N 1.31623 * 119.99812 * 352.42608 * 6 4 3 8 8 Si 1.86797 * 120.00385 * 172.42425 * 6 4 3 9 9 H 1.48499 * 109.47049 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47217 * 120.00239 * 8 6 4 11 11 H 1.48502 * 109.47435 * 240.00149 * 8 6 4 12 12 C 1.46500 * 120.00031 * 85.60491 * 3 2 1 13 13 C 1.50694 * 109.46959 * 89.99862 * 12 3 2 14 14 C 1.39817 * 126.08877 * 269.68920 * 13 12 3 15 15 C 1.50703 * 125.85488 * 0.02587 * 14 13 12 16 16 N 1.30828 * 108.28799 * 179.85706 * 14 13 12 17 17 N 1.40073 * 108.33805 * 0.40583 * 16 14 13 18 18 C 1.46503 * 126.03460 * 179.76321 * 17 16 14 19 19 C 1.35139 * 107.92623 * 359.74073 * 17 16 14 20 20 O 1.35757 * 126.19098 * 179.97438 * 19 17 16 21 21 C 1.42901 * 116.99879 * 276.98895 * 20 19 17 22 22 C 1.52999 * 109.46951 * 180.80594 * 21 20 19 23 23 F 1.39904 * 109.47366 * 60.00100 * 22 21 20 24 24 F 1.39908 * 109.46788 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.47140 * 299.99427 * 22 21 20 26 26 H 1.08997 * 109.47700 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47029 * 300.00081 * 1 2 3 28 28 H 1.08997 * 109.47269 * 59.99697 * 1 2 3 29 29 H 1.09008 * 109.47029 * 239.99919 * 2 1 3 30 30 H 1.08997 * 109.47269 * 120.00302 * 2 1 3 31 31 H 0.97007 * 120.00145 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47042 * 210.00326 * 12 3 2 33 33 H 1.09007 * 109.46779 * 330.00411 * 12 3 2 34 34 H 1.09002 * 109.47306 * 89.99949 * 15 14 13 35 35 H 1.08996 * 109.46891 * 209.99786 * 15 14 13 36 36 H 1.09003 * 109.47052 * 329.99675 * 15 14 13 37 37 H 1.08997 * 109.47071 * 274.63871 * 18 17 16 38 38 H 1.08995 * 109.47436 * 34.64063 * 18 17 16 39 39 H 1.09003 * 109.46811 * 154.63821 * 18 17 16 40 40 H 1.09000 * 109.46982 * 300.80465 * 21 20 19 41 41 H 1.08994 * 109.47219 * 60.80310 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3323 1.9964 -1.1824 5 1 2.8900 1.4625 -1.9376 6 6 1.9336 3.3063 -1.4105 7 7 1.1296 3.9072 -0.5591 8 14 2.5381 4.2163 -2.9257 9 1 3.4238 3.3254 -3.7176 10 1 1.3757 4.6228 -3.7556 11 1 3.2950 5.4240 -2.5087 12 6 2.1709 2.1042 1.2650 13 6 3.5588 1.8798 1.8076 14 6 3.9489 0.8526 2.6722 15 6 3.0517 -0.2252 3.2240 16 7 5.2271 0.9855 2.9172 17 7 5.6943 2.1091 2.2235 18 6 7.0692 2.6151 2.2287 19 6 4.6530 2.6437 1.5481 20 8 4.6924 3.7446 0.7547 21 6 4.5899 5.0146 1.4018 22 6 4.6328 6.1267 0.3519 23 9 3.5650 5.9693 -0.5382 24 9 4.5318 7.3701 0.9854 25 9 5.8402 6.0579 -0.3513 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.8512 4.8228 -0.7183 32 1 2.0148 3.1695 1.0957 33 1 1.4366 1.7389 1.9831 34 1 3.0550 -1.0814 2.5495 35 1 3.4148 -0.5335 4.2043 36 1 2.0362 0.1599 3.3174 37 1 7.2124 3.2692 3.0887 38 1 7.7643 1.7777 2.2894 39 1 7.2539 3.1747 1.3117 40 1 3.6491 5.0683 1.9497 41 1 5.4217 5.1372 2.0953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130853308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:41 Heat of formation + Delta-G solvation = -98.331978 kcal Electronic energy + Delta-G solvation = -29832.905502 eV Core-core repulsion = 25335.868652 eV Total energy + Delta-G solvation = -4497.036850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.20260 -48.75665 -48.66375 -42.35513 -39.25017 -37.61692 -34.74501 -33.56831 -32.17176 -31.02285 -30.38215 -29.64944 -27.42693 -25.89962 -24.73378 -24.53381 -22.31629 -21.56086 -20.69448 -19.73494 -19.59899 -19.02106 -18.62248 -18.10222 -16.97003 -16.67251 -16.55004 -15.96010 -15.74663 -15.50655 -15.40714 -15.36615 -15.10072 -15.00203 -14.86698 -14.82387 -14.47133 -14.22675 -14.16877 -13.91086 -13.60512 -13.25714 -13.02325 -12.93021 -12.89355 -12.72175 -12.66254 -12.43870 -12.14618 -11.99141 -11.82826 -11.74667 -11.32122 -11.02360 -10.36612 -9.94887 -9.14996 -8.29122 -7.63010 -5.34714 0.52969 1.22480 1.44115 1.50855 1.56098 1.65181 1.77229 2.35725 2.62038 2.71598 2.90910 3.34420 3.47808 3.61223 3.80008 3.98034 4.05166 4.22540 4.36650 4.41178 4.56779 4.57876 4.60825 4.79220 4.88775 4.96180 4.98141 5.13764 5.16129 5.20112 5.24599 5.42603 5.49171 5.68041 5.75079 5.87478 6.03855 6.48857 6.68946 6.77610 7.39959 8.03686 8.57262 9.29459 Molecular weight = 321.14amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.008028 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.998757 B = 3486.871787 C = 5423.071688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.138 3.862 3 N -0.587 5.587 4 C -0.256 4.256 5 H 0.028 0.972 6 C 0.012 3.988 7 N -0.897 5.897 8 Si 0.913 3.087 9 H -0.292 1.292 10 H -0.301 1.301 11 H -0.258 1.258 12 C 0.221 3.779 13 C -0.228 4.228 14 C 0.074 3.926 15 C -0.065 4.065 16 N -0.296 5.296 17 N -0.390 5.390 18 C 0.091 3.909 19 C 0.238 3.762 20 O -0.292 6.292 21 C 0.021 3.979 22 C 0.459 3.541 23 F -0.174 7.174 24 F -0.170 7.170 25 F -0.183 7.183 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.022 0.978 29 H 0.030 0.970 30 H 0.057 0.943 31 H 0.248 0.752 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 0.378 9.720 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.013 3.987 3 N -0.308 5.308 4 C -0.387 4.387 5 H 0.046 0.954 6 C -0.187 4.187 7 N -0.541 5.541 8 Si 0.744 3.256 9 H -0.218 1.218 10 H -0.229 1.229 11 H -0.183 1.183 12 C 0.094 3.906 13 C -0.242 4.242 14 C -0.091 4.091 15 C -0.124 4.124 16 N -0.123 5.123 17 N -0.184 5.184 18 C -0.049 4.049 19 C 0.070 3.930 20 O -0.201 6.201 21 C -0.056 4.056 22 C 0.404 3.596 23 F -0.156 7.156 24 F -0.151 7.151 25 F -0.164 7.164 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.139 0.238 10.021 13.565 hybrid contribution -0.284 1.400 -1.819 2.313 sum 8.856 1.638 8.202 12.181 Atomic orbital electron populations 1.22104 0.98665 0.99905 1.00056 1.21024 0.92599 0.86273 0.98806 1.43838 1.74472 1.10875 1.01610 1.18857 1.28320 0.96789 0.94743 0.95439 1.25407 0.96302 0.98910 0.98131 1.69839 1.35334 1.12281 1.36612 0.86250 0.77509 0.80349 0.81513 1.21793 1.22927 1.18319 1.19138 0.86542 0.99937 0.84994 1.21247 0.99097 0.99615 1.04289 1.22462 0.92152 0.97502 0.96986 1.20264 0.96900 0.94022 1.01173 1.77189 1.12126 1.04079 1.18955 1.49074 1.09304 1.22639 1.37359 1.22102 0.77337 1.01135 1.04281 1.18628 0.88617 0.90166 0.95555 1.86203 1.92969 1.10960 1.30013 1.23900 1.07435 0.81422 0.92873 1.20264 0.74079 0.82907 0.82310 1.93401 1.56845 1.95333 1.69982 1.93198 1.95949 1.44086 1.81866 1.93172 1.45942 1.96396 1.80909 0.91753 0.94144 0.95835 0.95127 0.92496 0.94162 0.90246 0.94409 0.90043 0.89413 0.89857 0.88725 0.88234 0.89256 0.87641 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 10.24 71.98 0.74 -4.89 16 2 C 0.14 5.70 6.39 86.38 0.55 6.25 16 3 N -0.59 -28.58 2.39 -706.35 -1.69 -30.27 16 4 C -0.26 -14.12 9.45 84.03 0.79 -13.32 16 5 H 0.03 1.63 7.84 -2.91 -0.02 1.60 16 6 C 0.01 0.63 5.23 84.86 0.44 1.08 16 7 N -0.90 -49.34 11.09 21.65 0.24 -49.10 16 8 Si 0.91 45.57 28.30 68.60 1.94 47.52 16 9 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 10 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 11 H -0.26 -12.40 5.13 99.48 0.51 -11.89 16 12 C 0.22 9.97 5.56 85.63 0.48 10.44 16 13 C -0.23 -9.23 5.70 -20.02 -0.11 -9.34 16 14 C 0.07 2.58 7.21 43.09 0.31 2.89 16 15 C -0.07 -1.72 9.41 71.24 0.67 -1.05 16 16 N -0.30 -10.23 12.57 -47.42 -0.60 -10.82 16 17 N -0.39 -12.85 4.02 -481.26 -1.93 -14.78 16 18 C 0.09 2.02 11.44 127.77 1.46 3.48 16 19 C 0.24 9.16 6.93 83.65 0.58 9.74 16 20 O -0.29 -11.42 9.91 -90.83 -0.90 -12.32 16 21 C 0.02 0.63 6.02 71.98 0.43 1.07 16 22 C 0.46 15.06 3.32 71.98 0.24 15.29 16 23 F -0.17 -7.31 13.84 44.97 0.62 -6.68 16 24 F -0.17 -4.85 17.32 44.97 0.78 -4.07 16 25 F -0.18 -5.98 17.26 44.97 0.78 -5.21 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.03 1.29 8.00 -2.38 -0.02 1.27 16 30 H 0.06 2.04 6.35 -2.39 -0.02 2.02 16 31 H 0.25 13.48 8.31 -92.70 -0.77 12.71 16 32 H 0.08 4.09 5.42 -2.39 -0.01 4.07 16 33 H 0.04 1.60 7.18 -2.38 -0.02 1.58 16 34 H 0.08 2.05 7.35 -2.39 -0.02 2.03 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 2.11 7.25 -2.39 -0.02 2.10 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16 40 H 0.11 3.22 8.14 -2.39 -0.02 3.21 16 41 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -66.30 353.79 6.68 -59.62 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 0.86 Total: 4.49 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 6.58 Total: 21.64 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -3.98 Total: -104.97 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.90 Total: -12.32 kcal Atomic # 9 Polarization: -18.14 SS G_CDS: 2.18 Total: -15.96 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.94 Total: 47.52 kcal Total: -66.30 6.68 -59.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130853308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.715 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds