Wall clock time and date at job start Tue Mar 31 2020 13:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47341 * 2 1 4 4 C 1.34829 * 117.00175 * 180.02562 * 3 2 1 5 5 O 1.21596 * 119.99734 * 359.97438 * 4 3 2 6 6 C 1.46747 * 120.00192 * 180.02562 * 4 3 2 7 7 C 1.41473 * 126.51162 * 0.02562 * 6 4 3 8 8 N 1.30312 * 108.16730 * 179.97438 * 7 6 4 9 9 N 1.39893 * 109.20771 * 0.02562 * 8 7 6 10 10 C 1.46509 * 125.74024 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47200 * 94.55186 * 10 9 8 12 12 H 1.07997 * 119.99937 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99657 * 179.72748 * 11 10 9 14 14 N 1.31519 * 119.99377 * 180.27807 * 13 11 10 15 15 Si 1.86791 * 120.00260 * 0.26958 * 13 11 10 16 16 H 1.48508 * 109.47134 * 90.00430 * 15 13 11 17 17 H 1.48501 * 109.47385 * 210.00336 * 15 13 11 18 18 H 1.48499 * 109.47167 * 330.00527 * 15 13 11 19 19 C 1.34762 * 108.51548 * 0.25777 * 9 8 7 20 20 N 1.38482 * 126.43128 * 179.73544 * 19 9 8 21 21 C 1.34780 * 119.99899 * 78.06593 * 20 19 9 22 22 O 1.21273 * 119.99732 * 4.53284 * 21 20 19 23 23 C 1.50699 * 120.00016 * 184.53133 * 21 20 19 24 24 C 1.53776 * 113.61590 * 279.13358 * 23 21 20 25 25 C 1.53949 * 87.02277 * 220.04909 * 24 23 21 26 26 C 1.53776 * 87.11082 * 25.36453 * 25 24 23 27 27 H 1.09001 * 109.47514 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47080 * 300.00270 * 1 2 3 29 29 H 1.09004 * 109.47104 * 59.99861 * 1 2 3 30 30 H 1.09001 * 109.47080 * 239.99730 * 2 1 3 31 31 H 1.09004 * 109.47104 * 120.00139 * 2 1 3 32 32 H 1.07993 * 125.91575 * 0.02562 * 7 6 4 33 33 H 1.09004 * 109.46759 * 334.55004 * 10 9 8 34 34 H 1.09002 * 109.46799 * 214.55014 * 10 9 8 35 35 H 0.97003 * 119.99160 * 180.02562 * 14 13 11 36 36 H 0.97004 * 120.00327 * 258.06249 * 20 19 9 37 37 H 1.08992 * 112.84883 * 50.33514 * 23 21 20 38 38 H 1.09003 * 113.61631 * 334.57510 * 24 23 21 39 39 H 1.09001 * 113.61124 * 105.47106 * 24 23 21 40 40 H 1.09003 * 113.53711 * 270.81550 * 25 24 23 41 41 H 1.08998 * 113.66580 * 139.93416 * 25 24 23 42 42 H 1.08998 * 113.61987 * 220.08728 * 26 25 24 43 43 H 1.09003 * 113.69494 * 89.19960 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3507 1.5456 -0.0005 5 8 4.0913 0.5812 -0.0005 6 6 3.9116 2.9016 0.0000 7 6 3.1827 4.1141 0.0016 8 7 4.0345 5.1003 0.0021 9 7 5.3351 4.5851 0.0004 10 6 6.5687 5.3755 0.0009 11 6 7.0534 5.5491 1.4171 12 1 6.4980 5.1146 2.2351 13 6 8.2088 6.2584 1.6682 14 7 8.6348 6.4053 2.9037 15 14 9.1691 7.0105 0.2535 16 1 8.6752 8.3873 -0.0035 17 1 10.6112 7.0595 0.6047 18 1 8.9844 6.1828 -0.9655 19 6 5.2623 3.2394 -0.0071 20 7 6.3305 2.3581 -0.0162 21 6 7.0082 2.1089 1.1219 22 8 6.6329 2.5917 2.1692 23 6 8.2323 1.2304 1.0929 24 6 7.9113 -0.2735 1.0901 25 6 9.0978 -0.4468 2.0555 26 6 8.8684 1.0144 2.4762 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1067 4.2063 0.0030 33 1 6.3736 6.3536 -0.4390 34 1 7.3308 4.8598 -0.5834 35 1 9.4475 6.9047 3.0803 36 1 6.5909 1.9201 -0.8416 37 1 8.9471 1.5257 0.3249 38 1 6.9464 -0.5149 1.5363 39 1 8.0620 -0.7503 0.1216 40 1 10.0496 -0.6114 1.5503 41 1 8.9112 -1.1654 2.8536 42 1 9.7907 1.5759 2.6252 43 1 8.1662 1.1273 3.3022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136859024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:54 Heat of formation + Delta-G solvation = -23.913501 kcal Electronic energy + Delta-G solvation = -27975.499750 eV Core-core repulsion = 24023.546667 eV Total energy + Delta-G solvation = -3951.953082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22214 -39.77424 -39.49681 -37.13475 -36.17857 -34.41052 -33.75238 -32.03202 -31.55519 -29.33423 -28.02652 -26.54403 -25.43131 -24.16217 -22.87263 -22.19732 -21.57087 -20.35975 -19.47084 -19.23225 -17.73422 -17.37498 -17.03266 -16.79226 -16.29785 -15.85433 -15.28751 -14.79939 -14.65061 -14.35800 -14.08062 -13.89703 -13.48062 -13.35062 -13.09480 -12.79191 -12.67152 -12.52325 -12.26558 -12.19121 -11.89920 -11.88017 -11.61540 -11.22601 -10.98506 -10.98287 -10.75027 -10.41684 -10.40690 -10.38956 -10.23927 -9.95919 -9.70171 -9.43559 -9.17415 -8.77897 -8.73346 -8.19164 -6.23147 -4.26876 1.66646 2.48408 2.66747 2.98865 3.11291 3.15656 3.18657 3.21214 3.53456 3.68574 4.19250 4.66724 4.75194 4.84569 4.89029 4.90482 4.96039 4.96962 5.08510 5.22798 5.25733 5.39409 5.53915 5.65053 5.68815 5.70603 5.78193 5.86469 5.94468 5.97834 6.04932 6.17246 6.22352 6.30591 6.34168 6.55204 6.62374 6.67409 6.90914 7.20985 7.44819 7.67298 8.06452 8.20957 8.28362 8.64920 8.93106 9.29045 10.88956 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.005158 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.969046 B = 5426.799336 C = 7402.792650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.357 6.357 4 C 0.552 3.448 5 O -0.525 6.525 6 C -0.304 4.304 7 C 0.090 3.910 8 N -0.279 5.279 9 N -0.303 5.303 10 C 0.223 3.777 11 C -0.537 4.537 12 H 0.094 0.906 13 C 0.083 3.917 14 N -0.878 5.878 15 Si 0.866 3.134 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.393 3.607 20 N -0.661 5.661 21 C 0.535 3.465 22 O -0.483 6.483 23 C -0.130 4.130 24 C -0.121 4.121 25 C -0.143 4.143 26 C -0.113 4.113 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.192 0.808 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.268 0.732 36 H 0.414 0.586 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -14.196 -8.610 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.398 3.602 5 O -0.415 6.415 6 C -0.319 4.319 7 C -0.097 4.097 8 N -0.101 5.101 9 N -0.082 5.082 10 C 0.104 3.896 11 C -0.575 4.575 12 H 0.112 0.888 13 C -0.121 4.121 14 N -0.514 5.514 15 Si 0.692 3.308 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.192 1.192 19 C 0.163 3.837 20 N -0.317 5.317 21 C 0.321 3.679 22 O -0.352 6.352 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.180 4.180 26 C -0.151 4.151 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.208 0.792 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.252 0.748 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.942 -12.667 -7.663 15.953 hybrid contribution 0.702 -0.557 -1.099 1.419 sum -5.240 -13.225 -8.762 16.707 Atomic orbital electron populations 1.21794 0.92950 1.02618 1.03506 1.22904 0.94969 0.80732 1.02297 1.86552 1.24279 1.31521 1.85080 1.19767 0.79928 0.88429 0.72049 1.90791 1.60238 1.42274 1.48189 1.18848 0.91404 0.91732 1.29954 1.23856 0.99920 0.88509 0.97376 1.77226 0.86698 1.22239 1.23896 1.49504 1.07276 1.03455 1.47918 1.20239 0.77126 0.91441 1.00766 1.21153 1.10190 1.35965 0.90242 0.88843 1.24748 0.96532 0.95348 0.95515 1.69883 1.22945 1.39956 1.18628 0.87032 0.80272 0.80694 0.82780 1.19530 1.20472 1.19218 1.17613 0.87342 0.82558 0.96161 1.42498 1.31843 1.44113 1.13204 1.20532 0.84018 0.80563 0.82803 1.90804 1.66507 1.48039 1.29842 1.22719 0.95460 0.95153 1.01779 1.22855 0.99563 0.93077 1.00368 1.22875 0.98245 0.97540 0.99356 1.22772 1.01293 0.95308 0.95756 0.90563 0.91466 0.91552 0.91566 0.91523 0.79156 0.92780 0.93637 0.92210 0.74807 0.86945 0.89438 0.90889 0.90122 0.91189 0.90761 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.84 16 2 C 0.07 0.73 6.20 37.16 0.23 0.97 16 3 O -0.36 -5.24 10.07 -40.84 -0.41 -5.65 16 4 C 0.55 9.63 7.94 34.17 0.27 9.90 16 5 O -0.52 -9.70 16.09 -19.34 -0.31 -10.01 16 6 C -0.30 -5.73 6.15 -104.86 -0.64 -6.38 16 7 C 0.09 1.60 11.86 -16.97 -0.20 1.40 16 8 N -0.28 -5.89 12.47 30.88 0.39 -5.50 16 9 N -0.30 -6.75 3.58 -61.12 -0.22 -6.97 16 10 C 0.22 5.26 5.14 -5.19 -0.03 5.24 16 11 C -0.54 -15.09 9.42 -34.44 -0.32 -15.42 16 12 H 0.09 3.07 7.37 -52.49 -0.39 2.69 16 13 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 14 N -0.88 -26.29 13.96 55.43 0.77 -25.52 16 15 Si 0.87 19.97 27.47 -169.99 -4.67 15.30 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -5.73 6.54 56.52 0.37 -5.36 16 19 C 0.39 8.00 6.48 -153.43 -0.99 7.01 16 20 N -0.66 -11.94 4.52 -11.08 -0.05 -11.99 16 21 C 0.53 10.52 7.31 -10.98 -0.08 10.44 16 22 O -0.48 -12.02 14.66 5.56 0.08 -11.94 16 23 C -0.13 -1.95 4.14 -90.96 -0.38 -2.33 16 24 C -0.12 -1.49 7.64 -25.83 -0.20 -1.69 16 25 C -0.14 -1.63 8.09 -25.83 -0.21 -1.84 16 26 C -0.11 -1.72 7.40 -25.92 -0.19 -1.91 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.19 2.58 8.06 -52.49 -0.42 2.16 16 33 H 0.05 1.25 7.58 -51.93 -0.39 0.86 16 34 H 0.05 1.02 7.19 -51.93 -0.37 0.64 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.41 5.89 8.82 -40.82 -0.36 5.53 16 37 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.10 1.66 7.45 -51.93 -0.39 1.27 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -34.97 371.37 -7.42 -42.39 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.14 Total: 7.52 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -2.46 Total: 6.78 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.89 Total: -49.98 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.64 Total: -27.61 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.97 -7.42 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136859024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.477 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds