Wall clock time and date at job start Tue Mar 31 2020 13:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47341 * 2 1 4 4 C 1.34829 * 117.00175 * 180.02562 * 3 2 1 5 5 O 1.21596 * 119.99734 * 359.97438 * 4 3 2 6 6 C 1.46747 * 120.00192 * 180.02562 * 4 3 2 7 7 C 1.41473 * 126.51162 * 0.02562 * 6 4 3 8 8 N 1.30312 * 108.16730 * 179.97438 * 7 6 4 9 9 N 1.39893 * 109.20771 * 0.02562 * 8 7 6 10 10 C 1.46509 * 125.74024 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47200 * 94.55186 * 10 9 8 12 12 H 1.07997 * 119.99937 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99657 * 179.72748 * 11 10 9 14 14 N 1.31519 * 119.99377 * 180.27807 * 13 11 10 15 15 Si 1.86791 * 120.00260 * 0.26958 * 13 11 10 16 16 H 1.48508 * 109.47134 * 90.00430 * 15 13 11 17 17 H 1.48501 * 109.47385 * 210.00336 * 15 13 11 18 18 H 1.48499 * 109.47167 * 330.00527 * 15 13 11 19 19 C 1.34762 * 108.51548 * 0.25777 * 9 8 7 20 20 N 1.38482 * 126.43128 * 179.73544 * 19 9 8 21 21 C 1.34780 * 119.99899 * 78.06593 * 20 19 9 22 22 O 1.21273 * 119.99732 * 4.53284 * 21 20 19 23 23 C 1.50699 * 120.00016 * 184.53133 * 21 20 19 24 24 C 1.53776 * 113.61590 * 279.13358 * 23 21 20 25 25 C 1.53949 * 87.02277 * 220.04909 * 24 23 21 26 26 C 1.53776 * 87.11082 * 25.36453 * 25 24 23 27 27 H 1.09001 * 109.47514 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47080 * 300.00270 * 1 2 3 29 29 H 1.09004 * 109.47104 * 59.99861 * 1 2 3 30 30 H 1.09001 * 109.47080 * 239.99730 * 2 1 3 31 31 H 1.09004 * 109.47104 * 120.00139 * 2 1 3 32 32 H 1.07993 * 125.91575 * 0.02562 * 7 6 4 33 33 H 1.09004 * 109.46759 * 334.55004 * 10 9 8 34 34 H 1.09002 * 109.46799 * 214.55014 * 10 9 8 35 35 H 0.97003 * 119.99160 * 180.02562 * 14 13 11 36 36 H 0.97004 * 120.00327 * 258.06249 * 20 19 9 37 37 H 1.08992 * 112.84883 * 50.33514 * 23 21 20 38 38 H 1.09003 * 113.61631 * 334.57510 * 24 23 21 39 39 H 1.09001 * 113.61124 * 105.47106 * 24 23 21 40 40 H 1.09003 * 113.53711 * 270.81550 * 25 24 23 41 41 H 1.08998 * 113.66580 * 139.93416 * 25 24 23 42 42 H 1.08998 * 113.61987 * 220.08728 * 26 25 24 43 43 H 1.09003 * 113.69494 * 89.19960 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3507 1.5456 -0.0005 5 8 4.0913 0.5812 -0.0005 6 6 3.9116 2.9016 0.0000 7 6 3.1827 4.1141 0.0016 8 7 4.0345 5.1003 0.0021 9 7 5.3351 4.5851 0.0004 10 6 6.5687 5.3755 0.0009 11 6 7.0534 5.5491 1.4171 12 1 6.4980 5.1146 2.2351 13 6 8.2088 6.2584 1.6682 14 7 8.6348 6.4053 2.9037 15 14 9.1691 7.0105 0.2535 16 1 8.6752 8.3873 -0.0035 17 1 10.6112 7.0595 0.6047 18 1 8.9844 6.1828 -0.9655 19 6 5.2623 3.2394 -0.0071 20 7 6.3305 2.3581 -0.0162 21 6 7.0082 2.1089 1.1219 22 8 6.6329 2.5917 2.1692 23 6 8.2323 1.2304 1.0929 24 6 7.9113 -0.2735 1.0901 25 6 9.0978 -0.4468 2.0555 26 6 8.8684 1.0144 2.4762 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1067 4.2063 0.0030 33 1 6.3736 6.3536 -0.4390 34 1 7.3308 4.8598 -0.5834 35 1 9.4475 6.9047 3.0803 36 1 6.5909 1.9201 -0.8416 37 1 8.9471 1.5257 0.3249 38 1 6.9464 -0.5149 1.5363 39 1 8.0620 -0.7503 0.1216 40 1 10.0496 -0.6114 1.5503 41 1 8.9112 -1.1654 2.8536 42 1 9.7907 1.5759 2.6252 43 1 8.1662 1.1273 3.3022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136859024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:53 Heat of formation + Delta-G solvation = -47.347533 kcal Electronic energy + Delta-G solvation = -27976.515925 eV Core-core repulsion = 24023.546667 eV Total energy + Delta-G solvation = -3952.969258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.75160 -41.13324 -40.85567 -38.44335 -37.45746 -36.04396 -35.64931 -33.83549 -32.55898 -30.82039 -29.85508 -27.82170 -26.54577 -25.62428 -24.42068 -23.38574 -22.98789 -21.78630 -21.05203 -20.41746 -19.33045 -19.12631 -18.63996 -18.21294 -17.44678 -17.23505 -16.60105 -16.54688 -16.15758 -15.78935 -15.55629 -15.35370 -14.82011 -14.73326 -14.54811 -14.36374 -13.99261 -13.86397 -13.52381 -13.43282 -13.18214 -13.01478 -12.82110 -12.69435 -12.50444 -12.30736 -12.21141 -12.14452 -11.80463 -11.45186 -11.43940 -11.39760 -11.32056 -11.05514 -10.90338 -10.71502 -10.38404 -9.77271 -8.37531 -6.49066 0.13553 0.99052 1.17330 1.30792 1.33289 1.41827 1.58665 1.82779 2.07077 2.23260 2.23952 2.91796 3.46697 3.56919 3.63594 3.75225 3.86894 3.89531 4.08348 4.13404 4.16812 4.19817 4.37702 4.40446 4.46821 4.65543 4.67232 4.79600 4.83510 4.94943 4.98450 4.99527 5.03352 5.08033 5.15476 5.17967 5.19393 5.42157 5.49590 5.50969 5.78088 6.17491 6.27161 6.53033 6.62280 6.84913 7.11444 7.17964 8.79457 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.005158 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.969046 B = 5426.799336 C = 7402.792650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.555 3.445 5 O -0.538 6.538 6 C -0.311 4.311 7 C 0.107 3.893 8 N -0.311 5.311 9 N -0.327 5.327 10 C 0.232 3.768 11 C -0.540 4.540 12 H 0.027 0.973 13 C 0.022 3.978 14 N -0.934 5.934 15 Si 0.947 3.053 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.235 1.235 19 C 0.378 3.622 20 N -0.650 5.650 21 C 0.528 3.472 22 O -0.549 6.549 23 C -0.132 4.132 24 C -0.109 4.109 25 C -0.119 4.119 26 C -0.131 4.131 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.233 0.767 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.271 0.729 36 H 0.432 0.568 37 H 0.143 0.857 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.281 -15.821 -11.882 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 O -0.271 6.271 4 C 0.401 3.599 5 O -0.430 6.430 6 C -0.327 4.327 7 C -0.080 4.080 8 N -0.132 5.132 9 N -0.106 5.106 10 C 0.113 3.887 11 C -0.579 4.579 12 H 0.045 0.955 13 C -0.178 4.178 14 N -0.572 5.572 15 Si 0.768 3.232 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.158 1.158 19 C 0.150 3.850 20 N -0.306 5.306 21 C 0.317 3.683 22 O -0.423 6.423 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.169 4.169 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.250 0.750 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.274 0.726 37 H 0.161 0.839 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.920 -14.337 -10.990 19.010 hybrid contribution 0.486 -0.156 0.033 0.512 sum -5.433 -14.493 -10.957 18.964 Atomic orbital electron populations 1.21821 0.90149 1.04400 1.03760 1.23297 0.97093 0.78910 1.02471 1.86540 1.22319 1.33841 1.84378 1.19560 0.80909 0.87579 0.71823 1.90773 1.60906 1.42479 1.48803 1.19162 0.91135 0.93079 1.29301 1.24538 1.01360 0.87315 0.94776 1.77166 0.86722 1.23693 1.25588 1.49351 1.07276 1.04011 1.49948 1.19967 0.78387 0.92500 0.97847 1.21104 1.10087 1.35611 0.91051 0.95459 1.25804 0.97555 0.95554 0.98861 1.70076 1.23895 1.41408 1.21853 0.85759 0.78056 0.80042 0.79388 1.18707 1.20006 1.15766 1.18050 0.88688 0.82419 0.95851 1.42526 1.31053 1.43325 1.13730 1.21512 0.84774 0.79949 0.82064 1.90788 1.68446 1.50780 1.32241 1.22999 0.93798 0.96090 1.02403 1.22803 0.98962 0.90626 1.02227 1.22840 0.99185 0.94392 0.99210 1.22805 1.00205 0.98856 0.95028 0.87993 0.91629 0.90857 0.90768 0.92064 0.75048 0.91882 0.91698 0.91979 0.72627 0.83916 0.91613 0.87442 0.87040 0.90236 0.91299 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.29 71.98 0.74 -1.20 16 2 C 0.06 1.15 6.20 71.98 0.45 1.60 16 3 O -0.35 -9.85 10.07 -57.42 -0.58 -10.43 16 4 C 0.55 18.94 7.94 70.05 0.56 19.50 16 5 O -0.54 -19.55 16.09 19.52 0.31 -19.23 16 6 C -0.31 -11.69 6.15 -20.02 -0.12 -11.81 16 7 C 0.11 3.72 11.86 85.72 1.02 4.74 16 8 N -0.31 -13.18 12.47 -56.23 -0.70 -13.88 16 9 N -0.33 -14.81 3.58 -347.28 -1.24 -16.06 16 10 C 0.23 11.04 5.14 85.63 0.44 11.48 16 11 C -0.54 -31.75 9.42 25.60 0.24 -31.51 16 12 H 0.03 1.93 7.37 -2.91 -0.02 1.91 16 13 C 0.02 1.26 5.47 84.65 0.46 1.72 16 14 N -0.93 -58.64 13.96 21.45 0.30 -58.34 16 15 Si 0.95 41.04 27.47 68.60 1.88 42.93 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.23 -8.86 6.54 99.48 0.65 -8.21 16 19 C 0.38 15.61 6.48 132.54 0.86 16.47 16 20 N -0.65 -23.53 4.52 -307.36 -1.39 -24.92 16 21 C 0.53 21.46 7.31 87.66 0.64 22.10 16 22 O -0.55 -29.40 14.66 -3.01 -0.04 -29.44 16 23 C -0.13 -3.88 4.14 -11.01 -0.05 -3.93 16 24 C -0.11 -2.47 7.64 31.18 0.24 -2.23 16 25 C -0.12 -2.46 8.09 31.18 0.25 -2.20 16 26 C -0.13 -4.07 7.40 31.12 0.23 -3.84 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.23 5.76 8.06 -2.91 -0.02 5.74 16 33 H 0.06 2.87 7.58 -2.38 -0.02 2.85 16 34 H 0.07 2.80 7.19 -2.39 -0.02 2.78 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.43 11.79 8.82 -92.70 -0.82 10.97 16 37 H 0.14 3.32 8.14 -2.39 -0.02 3.31 16 38 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 43 H 0.06 2.24 7.45 -2.39 -0.02 2.22 16 Total: -1.00 -83.77 371.37 4.66 -79.10 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.16 Total: 29.38 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 5.96 Total: 20.90 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -3.03 Total: -113.20 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -0.31 Total: -59.11 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.88 Total: 42.93 kcal Total: -83.77 4.66 -79.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136859024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.757 kcal (2) G-P(sol) polarization free energy of solvation -83.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds