Wall clock time and date at job start Tue Mar 31 2020 13:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.47319 * 2 1 4 4 C 1.34829 * 117.00135 * 179.97438 * 3 2 1 5 5 O 1.21586 * 120.00223 * 359.97438 * 4 3 2 6 6 C 1.46756 * 120.00132 * 180.02562 * 4 3 2 7 7 C 1.41470 * 126.51146 * 0.02632 * 6 4 3 8 8 N 1.30306 * 108.17217 * 179.71943 * 7 6 4 9 9 N 1.39902 * 109.20571 * 0.40838 * 8 7 6 10 10 C 1.46499 * 125.74612 * 179.84592 * 9 8 7 11 11 C 1.50700 * 109.46772 * 289.47697 * 10 9 8 12 12 H 1.07998 * 120.00273 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99659 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99833 * 180.27910 * 13 11 10 15 15 Si 1.86804 * 120.00116 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46879 * 90.00017 * 15 13 11 17 17 H 1.48497 * 109.46892 * 210.00014 * 15 13 11 18 18 H 1.48501 * 109.46868 * 329.99805 * 15 13 11 19 19 C 1.34771 * 108.51059 * 359.58149 * 9 8 7 20 20 N 1.38484 * 126.43096 * 180.21560 * 19 9 8 21 21 C 1.34769 * 120.00381 * 298.76256 * 20 19 9 22 22 O 1.21277 * 120.00150 * 4.56440 * 21 20 19 23 23 C 1.50699 * 120.00054 * 184.56125 * 21 20 19 24 24 H 1.08999 * 115.55123 * 34.41881 * 23 21 20 25 25 C 1.53007 * 117.49743 * 248.74464 * 23 21 20 26 26 C 1.53007 * 117.49961 * 180.08740 * 23 21 20 27 27 H 1.08997 * 117.49809 * 214.97689 * 26 23 21 28 28 C 1.52998 * 117.49773 * 359.97438 * 26 23 21 29 29 H 1.08994 * 109.46804 * 59.99635 * 1 2 3 30 30 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47031 * 299.99798 * 1 2 3 32 32 H 1.09000 * 109.47031 * 240.00202 * 2 1 3 33 33 H 1.09003 * 109.47386 * 120.00282 * 2 1 3 34 34 H 1.08002 * 125.91708 * 359.97438 * 7 6 4 35 35 H 1.08993 * 109.47383 * 169.47722 * 10 9 8 36 36 H 1.09001 * 109.46928 * 49.47506 * 10 9 8 37 37 H 0.97002 * 119.99734 * 179.72645 * 14 13 11 38 38 H 0.97004 * 119.99423 * 118.75840 * 20 19 9 39 39 H 1.08992 * 117.50049 * 0.02562 * 25 23 21 40 40 H 1.09002 * 117.49534 * 145.01708 * 25 23 21 41 41 H 1.09003 * 109.47319 * 59.99718 * 28 26 23 42 42 H 1.08998 * 109.47310 * 179.97438 * 28 26 23 43 43 H 1.09000 * 109.47064 * 299.99625 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3507 1.5456 0.0005 5 8 4.0914 0.5813 0.0015 6 6 3.9117 2.9017 0.0011 7 6 3.1828 4.1141 0.0018 8 7 4.0344 5.1003 0.0082 9 7 5.3351 4.5852 0.0026 10 6 6.5686 5.3755 0.0039 11 6 6.7329 6.0523 -1.3325 12 1 5.9924 5.9084 -2.1053 13 6 7.8282 6.8559 -1.5682 14 7 7.9688 7.4509 -2.7326 15 14 9.1087 7.1053 -0.2312 16 1 10.1594 6.0628 -0.3515 17 1 9.7246 8.4484 -0.3800 18 1 8.4600 7.0031 1.1007 19 6 5.2624 3.2394 0.0018 20 7 6.3306 2.3581 0.0010 21 6 7.2076 2.3631 -1.0223 22 8 7.1098 3.1934 -1.9008 23 6 8.3099 1.3368 -1.0748 24 1 8.0549 0.3524 -0.6825 25 6 9.7440 1.8294 -0.8698 26 6 9.2746 1.3964 -2.2610 27 1 9.6545 0.4512 -2.6486 28 6 9.0459 2.4928 -3.3032 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.1067 4.2064 0.0015 35 1 7.4200 4.7199 0.1863 36 1 6.5161 6.1297 0.7891 37 1 8.7373 8.0195 -2.8970 38 1 6.4475 1.7372 0.7371 39 1 9.8900 2.8955 -0.6964 40 1 10.4324 1.1687 -0.3427 41 1 9.1171 3.4696 -2.8247 42 1 9.8022 2.4153 -4.0842 43 1 8.0556 2.3751 -3.7431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136861572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:06 Heat of formation + Delta-G solvation = -13.503586 kcal Electronic energy + Delta-G solvation = -28002.216253 eV Core-core repulsion = 24050.714578 eV Total energy + Delta-G solvation = -3951.501674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28906 -39.81486 -39.44699 -36.57658 -36.21320 -34.45075 -33.73825 -32.01299 -31.55588 -29.42640 -28.21155 -27.90120 -24.85943 -23.77176 -22.86490 -22.17743 -21.24892 -20.51134 -19.89227 -19.47331 -17.63831 -17.24875 -16.96539 -16.81912 -16.33687 -15.85420 -15.31866 -14.75692 -14.60054 -14.12057 -13.92460 -13.78682 -13.49215 -13.43486 -13.16158 -12.83145 -12.72394 -12.49350 -12.31866 -12.15692 -11.92545 -11.90697 -11.64513 -11.28874 -11.15873 -10.96875 -10.74476 -10.44651 -10.37807 -10.14070 -10.00788 -9.90545 -9.72034 -9.58608 -9.26799 -8.70800 -8.56216 -8.15873 -6.16618 -4.15894 1.63192 2.47570 2.64576 2.76272 3.00335 3.13632 3.19232 3.22804 3.46995 3.62069 3.91790 4.25123 4.71280 4.83253 4.86556 4.88591 4.94426 4.96231 5.12677 5.20013 5.22163 5.26617 5.51530 5.53087 5.61330 5.68304 5.74496 5.83677 5.93989 5.99301 6.10427 6.18827 6.29670 6.37550 6.45944 6.52523 6.63354 6.90823 6.97809 7.28451 7.39011 7.56088 8.06522 8.19534 8.35207 8.49449 8.92949 9.36959 10.96523 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.004791 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.216636 B = 5843.382476 C = 7342.886065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.553 3.447 5 O -0.532 6.532 6 C -0.314 4.314 7 C 0.090 3.910 8 N -0.268 5.268 9 N -0.298 5.298 10 C 0.231 3.769 11 C -0.509 4.509 12 H 0.085 0.915 13 C 0.081 3.919 14 N -0.884 5.884 15 Si 0.862 3.138 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.385 3.615 20 N -0.655 5.655 21 C 0.528 3.472 22 O -0.457 6.457 23 C -0.187 4.187 24 H 0.124 0.876 25 C -0.155 4.155 26 C -0.112 4.112 27 H 0.109 0.891 28 C -0.117 4.117 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.192 0.808 35 H 0.040 0.960 36 H 0.049 0.951 37 H 0.266 0.734 38 H 0.418 0.582 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 -15.834 7.343 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.273 6.273 4 C 0.400 3.600 5 O -0.422 6.422 6 C -0.330 4.330 7 C -0.097 4.097 8 N -0.088 5.088 9 N -0.077 5.077 10 C 0.113 3.887 11 C -0.547 4.547 12 H 0.103 0.897 13 C -0.122 4.122 14 N -0.522 5.522 15 Si 0.689 3.311 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.192 1.192 19 C 0.155 3.845 20 N -0.310 5.310 21 C 0.314 3.686 22 O -0.325 6.325 23 C -0.209 4.209 24 H 0.142 0.858 25 C -0.193 4.193 26 C -0.131 4.131 27 H 0.127 0.873 28 C -0.174 4.174 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.209 0.791 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.257 0.743 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.109 -14.004 6.534 15.990 hybrid contribution 0.715 -1.258 1.050 1.787 sum -3.394 -15.262 7.584 17.377 Atomic orbital electron populations 1.21795 0.92914 1.02635 1.03552 1.22914 0.95014 0.80692 1.02294 1.86556 1.24191 1.31531 1.84999 1.19766 0.79964 0.88353 0.71899 1.90779 1.60294 1.42401 1.48766 1.18717 0.90939 0.91808 1.31488 1.23891 1.00007 0.88391 0.97460 1.77320 0.86430 1.21854 1.23211 1.49393 1.07587 1.02738 1.47982 1.20172 0.76754 0.90902 1.00921 1.20840 1.09658 1.27788 0.96441 0.89670 1.24693 0.97089 0.95162 0.95263 1.69854 1.29649 1.30710 1.21983 0.87087 0.82743 0.78576 0.82726 1.19813 1.20426 1.19179 1.17742 0.87255 0.82894 0.96634 1.42599 1.25775 1.37237 1.25413 1.20009 0.81815 0.85112 0.81646 1.91038 1.70530 1.35456 1.35468 1.22162 0.90678 0.99655 1.08371 0.85760 1.23156 0.93241 1.02705 1.00170 1.22404 0.99448 1.01378 0.89844 0.87297 1.21421 1.01371 0.97736 0.96827 0.91450 0.90553 0.91512 0.91520 0.91551 0.79121 0.94188 0.93315 0.92341 0.74293 0.87934 0.87944 0.90637 0.93472 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.80 16 2 C 0.07 0.71 6.20 37.16 0.23 0.94 16 3 O -0.36 -5.05 10.07 -40.84 -0.41 -5.47 16 4 C 0.55 9.27 7.94 34.17 0.27 9.54 16 5 O -0.53 -9.41 16.09 -19.33 -0.31 -9.72 16 6 C -0.31 -5.73 6.15 -104.86 -0.64 -6.38 16 7 C 0.09 1.59 11.86 -16.97 -0.20 1.39 16 8 N -0.27 -5.73 12.47 30.88 0.39 -5.35 16 9 N -0.30 -6.65 3.53 -61.13 -0.22 -6.87 16 10 C 0.23 5.55 4.36 -5.19 -0.02 5.53 16 11 C -0.51 -14.43 8.78 -34.44 -0.30 -14.74 16 12 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 13 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 14 N -0.88 -26.73 13.96 55.43 0.77 -25.95 16 15 Si 0.86 20.36 27.47 -169.99 -4.67 15.69 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 19 C 0.39 7.62 6.64 -153.42 -1.02 6.60 16 20 N -0.66 -11.22 4.38 -11.08 -0.05 -11.27 16 21 C 0.53 9.66 6.66 -10.99 -0.07 9.58 16 22 O -0.46 -10.48 10.85 5.56 0.06 -10.42 16 23 C -0.19 -2.59 6.19 -91.76 -0.57 -3.16 16 24 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 25 C -0.16 -1.99 9.88 -26.69 -0.26 -2.26 16 26 C -0.11 -1.53 6.41 -90.58 -0.58 -2.11 16 27 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 28 C -0.12 -1.99 8.43 37.16 0.31 -1.67 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.19 2.58 8.06 -52.49 -0.42 2.16 16 35 H 0.04 0.93 6.35 -51.93 -0.33 0.60 16 36 H 0.05 1.16 7.20 -51.93 -0.37 0.79 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.42 5.74 8.82 -40.82 -0.36 5.38 16 39 H 0.10 1.56 8.05 -51.93 -0.42 1.14 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.55 7.02 -51.93 -0.36 1.19 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.30 7.26 -51.93 -0.38 0.92 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -34.19 367.23 -7.52 -41.70 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.04 Total: 7.45 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -2.58 Total: 4.66 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.89 Total: -49.44 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.66 Total: -25.61 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.19 -7.52 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136861572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.201 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds