Wall clock time and date at job start Tue Mar 31 2020 13:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.47319 * 2 1 4 4 C 1.34829 * 117.00135 * 179.97438 * 3 2 1 5 5 O 1.21586 * 120.00223 * 359.97438 * 4 3 2 6 6 C 1.46756 * 120.00132 * 180.02562 * 4 3 2 7 7 C 1.41470 * 126.51146 * 0.02632 * 6 4 3 8 8 N 1.30306 * 108.17217 * 179.71943 * 7 6 4 9 9 N 1.39902 * 109.20571 * 0.40838 * 8 7 6 10 10 C 1.46499 * 125.74612 * 179.84592 * 9 8 7 11 11 C 1.50700 * 109.46772 * 289.47697 * 10 9 8 12 12 H 1.07998 * 120.00273 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99659 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99833 * 180.27910 * 13 11 10 15 15 Si 1.86804 * 120.00116 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46879 * 90.00017 * 15 13 11 17 17 H 1.48497 * 109.46892 * 210.00014 * 15 13 11 18 18 H 1.48501 * 109.46868 * 329.99805 * 15 13 11 19 19 C 1.34771 * 108.51059 * 359.58149 * 9 8 7 20 20 N 1.38484 * 126.43096 * 180.21560 * 19 9 8 21 21 C 1.34769 * 120.00381 * 298.76256 * 20 19 9 22 22 O 1.21277 * 120.00150 * 4.56440 * 21 20 19 23 23 C 1.50699 * 120.00054 * 184.56125 * 21 20 19 24 24 H 1.08999 * 115.55123 * 34.41881 * 23 21 20 25 25 C 1.53007 * 117.49743 * 248.74464 * 23 21 20 26 26 C 1.53007 * 117.49961 * 180.08740 * 23 21 20 27 27 H 1.08997 * 117.49809 * 214.97689 * 26 23 21 28 28 C 1.52998 * 117.49773 * 359.97438 * 26 23 21 29 29 H 1.08994 * 109.46804 * 59.99635 * 1 2 3 30 30 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47031 * 299.99798 * 1 2 3 32 32 H 1.09000 * 109.47031 * 240.00202 * 2 1 3 33 33 H 1.09003 * 109.47386 * 120.00282 * 2 1 3 34 34 H 1.08002 * 125.91708 * 359.97438 * 7 6 4 35 35 H 1.08993 * 109.47383 * 169.47722 * 10 9 8 36 36 H 1.09001 * 109.46928 * 49.47506 * 10 9 8 37 37 H 0.97002 * 119.99734 * 179.72645 * 14 13 11 38 38 H 0.97004 * 119.99423 * 118.75840 * 20 19 9 39 39 H 1.08992 * 117.50049 * 0.02562 * 25 23 21 40 40 H 1.09002 * 117.49534 * 145.01708 * 25 23 21 41 41 H 1.09003 * 109.47319 * 59.99718 * 28 26 23 42 42 H 1.08998 * 109.47310 * 179.97438 * 28 26 23 43 43 H 1.09000 * 109.47064 * 299.99625 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3507 1.5456 0.0005 5 8 4.0914 0.5813 0.0015 6 6 3.9117 2.9017 0.0011 7 6 3.1828 4.1141 0.0018 8 7 4.0344 5.1003 0.0082 9 7 5.3351 4.5852 0.0026 10 6 6.5686 5.3755 0.0039 11 6 6.7329 6.0523 -1.3325 12 1 5.9924 5.9084 -2.1053 13 6 7.8282 6.8559 -1.5682 14 7 7.9688 7.4509 -2.7326 15 14 9.1087 7.1053 -0.2312 16 1 10.1594 6.0628 -0.3515 17 1 9.7246 8.4484 -0.3800 18 1 8.4600 7.0031 1.1007 19 6 5.2624 3.2394 0.0018 20 7 6.3306 2.3581 0.0010 21 6 7.2076 2.3631 -1.0223 22 8 7.1098 3.1934 -1.9008 23 6 8.3099 1.3368 -1.0748 24 1 8.0549 0.3524 -0.6825 25 6 9.7440 1.8294 -0.8698 26 6 9.2746 1.3964 -2.2610 27 1 9.6545 0.4512 -2.6486 28 6 9.0459 2.4928 -3.3032 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.1067 4.2064 0.0015 35 1 7.4200 4.7199 0.1863 36 1 6.5161 6.1297 0.7891 37 1 8.7373 8.0195 -2.8970 38 1 6.4475 1.7372 0.7371 39 1 9.8900 2.8955 -0.6964 40 1 10.4324 1.1687 -0.3427 41 1 9.1171 3.4696 -2.8247 42 1 9.8022 2.4153 -4.0842 43 1 8.0556 2.3751 -3.7431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136861572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:05 Heat of formation + Delta-G solvation = -36.190572 kcal Electronic energy + Delta-G solvation = -28003.200034 eV Core-core repulsion = 24050.714578 eV Total energy + Delta-G solvation = -3952.485456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.79187 -41.11463 -40.79921 -37.80642 -37.43412 -35.96699 -35.68145 -33.81922 -32.54559 -30.88007 -29.87306 -29.43117 -26.24314 -25.12030 -24.45559 -23.32381 -22.49933 -21.85150 -21.20733 -20.98917 -19.26549 -19.08873 -18.29388 -18.25012 -17.43968 -17.21850 -16.66803 -16.41508 -16.21863 -15.58667 -15.38166 -15.08988 -14.85870 -14.75606 -14.61558 -14.34266 -14.06297 -13.96153 -13.62904 -13.51313 -13.20755 -13.14447 -12.81522 -12.70850 -12.49222 -12.39358 -12.29897 -12.20685 -11.84363 -11.42683 -11.40776 -11.26693 -11.20609 -11.07359 -10.87844 -10.70676 -10.22155 -9.69263 -8.36356 -6.42414 0.15320 1.00883 1.18097 1.25604 1.29682 1.37324 1.39094 1.78814 2.03308 2.21678 2.23169 2.79611 2.93515 3.51368 3.59869 3.73618 3.87018 3.88215 4.08507 4.10153 4.15614 4.17163 4.33096 4.41183 4.46063 4.46417 4.66357 4.76734 4.86146 4.90632 4.92306 4.95521 5.00702 5.00774 5.16391 5.18256 5.20573 5.44343 5.51042 5.55816 5.76913 6.18095 6.22275 6.53818 6.62800 6.85048 7.10851 7.15689 8.81498 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.004791 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.216636 B = 5843.382476 C = 7342.886065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.558 3.442 5 O -0.541 6.541 6 C -0.317 4.317 7 C 0.107 3.893 8 N -0.310 5.310 9 N -0.325 5.325 10 C 0.246 3.754 11 C -0.510 4.510 12 H 0.021 0.979 13 C 0.020 3.980 14 N -0.938 5.938 15 Si 0.937 3.063 16 H -0.258 1.258 17 H -0.274 1.274 18 H -0.242 1.242 19 C 0.376 3.624 20 N -0.644 5.644 21 C 0.520 3.480 22 O -0.515 6.515 23 C -0.186 4.186 24 H 0.165 0.835 25 C -0.138 4.138 26 C -0.116 4.116 27 H 0.150 0.850 28 C -0.110 4.110 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.232 0.768 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.269 0.731 38 H 0.435 0.565 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.028 0.972 42 H 0.065 0.935 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 -18.884 9.898 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.271 6.271 4 C 0.405 3.595 5 O -0.433 6.433 6 C -0.333 4.333 7 C -0.080 4.080 8 N -0.131 5.131 9 N -0.104 5.104 10 C 0.127 3.873 11 C -0.548 4.548 12 H 0.039 0.961 13 C -0.178 4.178 14 N -0.578 5.578 15 Si 0.759 3.241 16 H -0.182 1.182 17 H -0.199 1.199 18 H -0.165 1.165 19 C 0.146 3.854 20 N -0.300 5.300 21 C 0.308 3.692 22 O -0.387 6.387 23 C -0.207 4.207 24 H 0.182 0.818 25 C -0.175 4.175 26 C -0.134 4.134 27 H 0.168 0.832 28 C -0.168 4.168 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.248 0.752 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.277 0.723 39 H 0.091 0.909 40 H 0.166 0.834 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.688 -17.107 9.133 19.740 hybrid contribution 0.359 -0.408 0.142 0.561 sum -3.329 -17.515 9.275 20.097 Atomic orbital electron populations 1.21824 0.90331 1.04368 1.03714 1.23303 0.96984 0.78867 1.02597 1.86546 1.22344 1.33870 1.84315 1.19475 0.80901 0.87377 0.71712 1.90763 1.60877 1.42451 1.49212 1.18989 0.90505 0.93066 1.30709 1.24564 1.01347 0.87381 0.94757 1.77252 0.86686 1.23741 1.25377 1.49166 1.07318 1.03581 1.50346 1.19769 0.78347 0.91093 0.98134 1.20784 1.08400 1.28529 0.97078 0.96105 1.25697 0.99595 0.94428 0.98104 1.70037 1.30887 1.31986 1.24845 0.85890 0.79446 0.78881 0.79907 1.18233 1.19893 1.16536 1.18175 0.88752 0.82466 0.95958 1.42677 1.24896 1.36683 1.25782 1.20974 0.82328 0.85176 0.80711 1.91047 1.72021 1.38012 1.37613 1.22287 0.89497 0.99797 1.09119 0.81798 1.23243 0.92882 1.01998 0.99393 1.22502 0.99996 1.01660 0.89278 0.83224 1.21251 1.00327 0.96963 0.98218 0.91625 0.88010 0.91002 0.91762 0.90768 0.75167 0.93130 0.92846 0.92138 0.72281 0.90871 0.83370 0.95258 0.91614 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.29 71.98 0.74 -1.10 16 2 C 0.06 1.08 6.20 71.98 0.45 1.53 16 3 O -0.35 -9.36 10.07 -57.41 -0.58 -9.94 16 4 C 0.56 17.92 7.94 70.05 0.56 18.48 16 5 O -0.54 -18.23 16.09 19.55 0.31 -17.91 16 6 C -0.32 -11.45 6.15 -20.02 -0.12 -11.57 16 7 C 0.11 3.74 11.86 85.72 1.02 4.76 16 8 N -0.31 -13.65 12.47 -56.22 -0.70 -14.35 16 9 N -0.33 -14.95 3.53 -347.31 -1.23 -16.18 16 10 C 0.25 12.19 4.36 85.63 0.37 12.56 16 11 C -0.51 -30.74 8.78 25.60 0.22 -30.52 16 12 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 13 C 0.02 1.21 5.47 84.65 0.46 1.67 16 14 N -0.94 -60.02 13.96 21.45 0.30 -59.72 16 15 Si 0.94 42.80 27.47 68.60 1.88 44.68 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 19 C 0.38 15.01 6.64 132.54 0.88 15.89 16 20 N -0.64 -21.74 4.38 -307.36 -1.35 -23.09 16 21 C 0.52 19.09 6.66 87.66 0.58 19.67 16 22 O -0.52 -25.00 10.85 -3.02 -0.03 -25.04 16 23 C -0.19 -4.71 6.19 -11.54 -0.07 -4.78 16 24 H 0.16 2.87 8.14 -2.39 -0.02 2.85 16 25 C -0.14 -3.14 9.88 30.62 0.30 -2.83 16 26 C -0.12 -2.93 6.41 -10.77 -0.07 -2.99 16 27 H 0.15 2.61 8.14 -2.39 -0.02 2.59 16 28 C -0.11 -3.90 8.43 71.98 0.61 -3.30 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.23 5.83 8.06 -2.91 -0.02 5.80 16 35 H 0.05 2.38 6.35 -2.39 -0.02 2.36 16 36 H 0.05 2.57 7.20 -2.39 -0.02 2.55 16 37 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 38 H 0.44 11.20 8.82 -92.71 -0.82 10.39 16 39 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 40 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.03 1.27 7.02 -2.39 -0.02 1.26 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.04 1.59 7.26 -2.39 -0.02 1.57 16 Total: -1.00 -82.87 367.23 4.71 -78.16 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.17 Total: 25.92 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 5.93 Total: 17.46 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -2.98 Total: -113.34 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.30 Total: -52.88 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Total: -82.87 4.71 -78.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136861572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.966 kcal (2) G-P(sol) polarization free energy of solvation -82.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds