Wall clock time and date at job start Tue Mar 31 2020 13:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.46903 * 2 1 4 4 C 1.34831 * 116.99797 * 180.02562 * 3 2 1 5 5 O 1.21590 * 120.00413 * 359.97438 * 4 3 2 6 6 C 1.46752 * 119.99946 * 179.97438 * 4 3 2 7 7 C 1.41473 * 126.50954 * 0.02562 * 6 4 3 8 8 N 1.30312 * 108.16481 * 179.71913 * 7 6 4 9 9 N 1.39898 * 109.20981 * 0.40973 * 8 7 6 10 10 C 1.46497 * 125.74522 * 179.84983 * 9 8 7 11 11 C 1.50704 * 109.46948 * 289.41121 * 10 9 8 12 12 H 1.07999 * 119.99750 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99800 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99789 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00303 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46845 * 269.99743 * 15 13 11 17 17 H 1.48501 * 109.47062 * 29.99467 * 15 13 11 18 18 H 1.48492 * 109.47137 * 149.99408 * 15 13 11 19 19 C 1.34767 * 108.51169 * 359.57787 * 9 8 7 20 20 N 1.38478 * 126.43029 * 180.22280 * 19 9 8 21 21 C 1.34779 * 120.00030 * 298.86817 * 20 19 9 22 22 O 1.21271 * 119.99984 * 4.47091 * 21 20 19 23 23 C 1.50705 * 120.00073 * 184.46875 * 21 20 19 24 24 H 1.08999 * 115.54775 * 325.72413 * 23 21 20 25 25 C 1.52993 * 117.49918 * 111.39419 * 23 21 20 26 26 C 1.52993 * 117.50111 * 180.02562 * 23 21 20 27 27 H 1.09004 * 117.49996 * 359.97438 * 26 23 21 28 28 C 1.53001 * 117.50458 * 145.01895 * 26 23 21 29 29 H 1.08998 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47314 * 300.00387 * 1 2 3 31 31 H 1.09005 * 109.47484 * 60.00008 * 1 2 3 32 32 H 1.09000 * 109.47281 * 240.00382 * 2 1 3 33 33 H 1.08997 * 109.47289 * 119.99697 * 2 1 3 34 34 H 1.07999 * 125.92022 * 359.95702 * 7 6 4 35 35 H 1.09000 * 109.47507 * 169.40695 * 10 9 8 36 36 H 1.09004 * 109.47280 * 49.40922 * 10 9 8 37 37 H 0.96995 * 120.00503 * 180.02562 * 14 13 11 38 38 H 0.96999 * 120.00141 * 118.87871 * 20 19 9 39 39 H 1.09006 * 117.49672 * 214.98021 * 25 23 21 40 40 H 1.09002 * 117.50100 * 0.02562 * 25 23 21 41 41 H 1.08999 * 109.46456 * 59.99884 * 28 26 23 42 42 H 1.08997 * 109.47442 * 180.02562 * 28 26 23 43 43 H 1.08997 * 109.46659 * 299.99917 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3506 1.5457 -0.0005 5 8 4.0914 0.5815 -0.0005 6 6 3.9115 2.9018 -0.0011 7 6 3.1825 4.1142 -0.0007 8 7 4.0342 5.1004 0.0046 9 7 5.3349 4.5853 -0.0017 10 6 6.5684 5.3757 -0.0016 11 6 6.7326 6.0505 -1.3391 12 1 5.9919 5.9054 -2.1116 13 6 7.8278 6.8539 -1.5761 14 7 7.9713 7.4423 -2.7434 15 14 9.1084 7.1053 -0.2396 16 1 8.7364 8.2812 0.5874 17 1 9.1712 5.8958 0.6197 18 1 10.4356 7.3387 -0.8634 19 6 5.2622 3.2396 -0.0016 20 7 6.3304 2.3584 -0.0025 21 6 7.2080 2.3642 -1.0254 22 8 7.1095 3.1942 -1.9041 23 6 8.3117 1.3394 -1.0772 24 1 8.7188 1.0378 -0.1121 25 6 8.2388 0.2775 -2.1761 26 6 9.2760 1.3990 -2.2635 27 1 9.1119 2.1792 -3.0068 28 6 10.7383 1.0306 -2.0046 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1064 4.2064 -0.0006 35 1 7.4199 4.7204 0.1817 36 1 6.5159 6.1311 0.7824 37 1 8.7419 8.0072 -2.9103 38 1 6.4469 1.7368 0.7329 39 1 8.5982 -0.7227 -1.9341 40 1 7.3927 0.3203 -2.8620 41 1 10.7953 0.0056 -1.6383 42 1 11.3046 1.1175 -2.9319 43 1 11.1567 1.7068 -1.2591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136861621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:10 Heat of formation + Delta-G solvation = -17.770111 kcal Electronic energy + Delta-G solvation = -27652.649062 eV Core-core repulsion = 23700.962377 eV Total energy + Delta-G solvation = -3951.686685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28436 -39.77789 -39.39042 -36.75223 -36.23304 -34.48367 -33.72603 -32.00789 -31.55283 -29.48426 -28.55757 -27.94944 -24.83165 -23.75454 -22.85125 -22.18748 -21.22413 -20.47217 -19.94995 -19.49231 -17.72823 -17.39370 -16.99674 -16.88765 -16.34080 -15.87696 -15.11480 -14.66436 -14.54133 -14.33626 -14.05533 -13.88221 -13.47901 -13.29632 -13.26798 -13.10306 -12.83006 -12.70400 -12.47520 -12.14648 -12.00203 -11.91217 -11.64358 -11.37147 -11.15402 -10.96196 -10.77455 -10.44563 -10.32395 -10.29678 -10.05985 -9.99973 -9.76844 -9.58947 -9.53530 -8.70087 -8.56102 -8.16304 -6.15130 -4.14520 1.62625 2.46210 2.64945 2.75809 3.00077 3.17166 3.20446 3.24271 3.44441 3.58032 3.93263 4.27127 4.68833 4.79477 4.84407 4.86535 4.88285 4.95722 5.13828 5.19539 5.20304 5.24976 5.35680 5.51161 5.61484 5.63380 5.68275 5.71115 5.76010 5.83750 5.96879 5.99263 6.08323 6.20730 6.35612 6.40885 6.52152 6.63323 6.91224 7.29848 7.37995 7.54574 8.06526 8.19423 8.36458 8.46489 8.93873 9.38495 10.98211 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.004915 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.400157 B = 5695.396718 C = 7742.724682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.552 3.448 5 O -0.530 6.530 6 C -0.313 4.313 7 C 0.090 3.910 8 N -0.268 5.268 9 N -0.299 5.299 10 C 0.230 3.770 11 C -0.510 4.510 12 H 0.085 0.915 13 C 0.080 3.920 14 N -0.885 5.885 15 Si 0.867 3.133 16 H -0.272 1.272 17 H -0.269 1.269 18 H -0.279 1.279 19 C 0.384 3.616 20 N -0.654 5.654 21 C 0.529 3.471 22 O -0.463 6.463 23 C -0.183 4.183 24 H 0.123 0.877 25 C -0.145 4.145 26 C -0.121 4.121 27 H 0.122 0.878 28 C -0.122 4.122 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.192 0.808 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.419 0.581 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 -17.065 7.303 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.273 6.273 4 C 0.400 3.600 5 O -0.421 6.421 6 C -0.329 4.329 7 C -0.097 4.097 8 N -0.088 5.088 9 N -0.077 5.077 10 C 0.111 3.889 11 C -0.548 4.548 12 H 0.103 0.897 13 C -0.123 4.123 14 N -0.523 5.523 15 Si 0.694 3.306 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.205 1.205 19 C 0.154 3.846 20 N -0.309 5.309 21 C 0.315 3.685 22 O -0.331 6.331 23 C -0.205 4.205 24 H 0.141 0.859 25 C -0.182 4.182 26 C -0.140 4.140 27 H 0.140 0.860 28 C -0.179 4.179 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.209 0.791 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.258 0.742 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.994 -15.243 6.497 17.045 hybrid contribution 0.702 -1.092 1.059 1.676 sum -3.292 -16.335 7.556 18.297 Atomic orbital electron populations 1.21795 0.92921 1.02634 1.03552 1.22913 0.95007 0.80688 1.02296 1.86559 1.24186 1.31531 1.85007 1.19763 0.79975 0.88347 0.71942 1.90786 1.60264 1.42366 1.48697 1.18714 0.90882 0.91845 1.31481 1.23896 1.00012 0.88376 0.97452 1.77321 0.86448 1.21875 1.23194 1.49402 1.07595 1.02759 1.47955 1.20198 0.76829 0.91110 1.00721 1.20843 1.09725 1.27795 0.96472 0.89719 1.24705 0.97075 0.95107 0.95395 1.69851 1.29585 1.31003 1.21875 0.87014 0.82137 0.79078 0.82418 1.19696 1.19444 1.20470 1.17741 0.87260 0.82876 0.96722 1.42519 1.25677 1.37073 1.25593 1.19987 0.81795 0.85056 0.81685 1.91031 1.70848 1.35180 1.36053 1.22125 1.00072 1.01250 0.97016 0.85943 1.23088 1.01953 0.93890 0.99289 1.22452 0.91613 1.01220 0.98695 0.85989 1.21390 0.93388 1.00955 1.02173 0.90553 0.91512 0.91454 0.91520 0.91544 0.79089 0.93632 0.93677 0.92332 0.74210 0.87864 0.88234 0.92525 0.91644 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.79 16 2 C 0.07 0.70 6.20 37.16 0.23 0.93 16 3 O -0.36 -5.05 10.07 -40.85 -0.41 -5.46 16 4 C 0.55 9.27 7.94 34.17 0.27 9.54 16 5 O -0.53 -9.37 16.09 -19.34 -0.31 -9.68 16 6 C -0.31 -5.76 6.15 -104.86 -0.64 -6.41 16 7 C 0.09 1.60 11.86 -16.97 -0.20 1.40 16 8 N -0.27 -5.78 12.47 30.88 0.39 -5.40 16 9 N -0.30 -6.75 3.53 -61.13 -0.22 -6.97 16 10 C 0.23 5.63 4.36 -5.19 -0.02 5.61 16 11 C -0.51 -14.79 8.77 -34.44 -0.30 -15.09 16 12 H 0.08 2.82 8.06 -52.49 -0.42 2.40 16 13 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 14 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 15 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.38 7.71 6.64 -153.43 -1.02 6.69 16 20 N -0.65 -11.39 4.38 -11.08 -0.05 -11.43 16 21 C 0.53 9.91 6.68 -10.98 -0.07 9.84 16 22 O -0.46 -11.14 13.99 5.57 0.08 -11.06 16 23 C -0.18 -2.57 5.91 -91.78 -0.54 -3.11 16 24 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 25 C -0.14 -1.78 9.88 -26.73 -0.26 -2.04 16 26 C -0.12 -1.66 5.92 -90.62 -0.54 -2.20 16 27 H 0.12 2.03 7.67 -51.93 -0.40 1.63 16 28 C -0.12 -1.30 10.19 37.16 0.38 -0.92 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.19 2.60 8.06 -52.49 -0.42 2.17 16 35 H 0.05 1.09 5.98 -51.93 -0.31 0.78 16 36 H 0.05 1.07 7.57 -51.93 -0.39 0.68 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.42 5.81 8.82 -40.82 -0.36 5.45 16 39 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 40 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -35.48 372.64 -7.35 -42.83 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.11 Total: 6.20 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.44 Total: 5.68 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.89 Total: -50.27 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.64 Total: -26.20 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.48 -7.35 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136861621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.062 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds