Wall clock time and date at job start Tue Mar 31 2020 13:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.46903 * 2 1 4 4 C 1.34831 * 116.99797 * 180.02562 * 3 2 1 5 5 O 1.21590 * 120.00413 * 359.97438 * 4 3 2 6 6 C 1.46752 * 119.99946 * 179.97438 * 4 3 2 7 7 C 1.41473 * 126.50954 * 0.02562 * 6 4 3 8 8 N 1.30312 * 108.16481 * 179.71913 * 7 6 4 9 9 N 1.39898 * 109.20981 * 0.40973 * 8 7 6 10 10 C 1.46497 * 125.74522 * 179.84983 * 9 8 7 11 11 C 1.50704 * 109.46948 * 289.41121 * 10 9 8 12 12 H 1.07999 * 119.99750 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99800 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99789 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00303 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46845 * 269.99743 * 15 13 11 17 17 H 1.48501 * 109.47062 * 29.99467 * 15 13 11 18 18 H 1.48492 * 109.47137 * 149.99408 * 15 13 11 19 19 C 1.34767 * 108.51169 * 359.57787 * 9 8 7 20 20 N 1.38478 * 126.43029 * 180.22280 * 19 9 8 21 21 C 1.34779 * 120.00030 * 298.86817 * 20 19 9 22 22 O 1.21271 * 119.99984 * 4.47091 * 21 20 19 23 23 C 1.50705 * 120.00073 * 184.46875 * 21 20 19 24 24 H 1.08999 * 115.54775 * 325.72413 * 23 21 20 25 25 C 1.52993 * 117.49918 * 111.39419 * 23 21 20 26 26 C 1.52993 * 117.50111 * 180.02562 * 23 21 20 27 27 H 1.09004 * 117.49996 * 359.97438 * 26 23 21 28 28 C 1.53001 * 117.50458 * 145.01895 * 26 23 21 29 29 H 1.08998 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47314 * 300.00387 * 1 2 3 31 31 H 1.09005 * 109.47484 * 60.00008 * 1 2 3 32 32 H 1.09000 * 109.47281 * 240.00382 * 2 1 3 33 33 H 1.08997 * 109.47289 * 119.99697 * 2 1 3 34 34 H 1.07999 * 125.92022 * 359.95702 * 7 6 4 35 35 H 1.09000 * 109.47507 * 169.40695 * 10 9 8 36 36 H 1.09004 * 109.47280 * 49.40922 * 10 9 8 37 37 H 0.96995 * 120.00503 * 180.02562 * 14 13 11 38 38 H 0.96999 * 120.00141 * 118.87871 * 20 19 9 39 39 H 1.09006 * 117.49672 * 214.98021 * 25 23 21 40 40 H 1.09002 * 117.50100 * 0.02562 * 25 23 21 41 41 H 1.08999 * 109.46456 * 59.99884 * 28 26 23 42 42 H 1.08997 * 109.47442 * 180.02562 * 28 26 23 43 43 H 1.08997 * 109.46659 * 299.99917 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3506 1.5457 -0.0005 5 8 4.0914 0.5815 -0.0005 6 6 3.9115 2.9018 -0.0011 7 6 3.1825 4.1142 -0.0007 8 7 4.0342 5.1004 0.0046 9 7 5.3349 4.5853 -0.0017 10 6 6.5684 5.3757 -0.0016 11 6 6.7326 6.0505 -1.3391 12 1 5.9919 5.9054 -2.1116 13 6 7.8278 6.8539 -1.5761 14 7 7.9713 7.4423 -2.7434 15 14 9.1084 7.1053 -0.2396 16 1 8.7364 8.2812 0.5874 17 1 9.1712 5.8958 0.6197 18 1 10.4356 7.3387 -0.8634 19 6 5.2622 3.2396 -0.0016 20 7 6.3304 2.3584 -0.0025 21 6 7.2080 2.3642 -1.0254 22 8 7.1095 3.1942 -1.9041 23 6 8.3117 1.3394 -1.0772 24 1 8.7188 1.0378 -0.1121 25 6 8.2388 0.2775 -2.1761 26 6 9.2760 1.3990 -2.2635 27 1 9.1119 2.1792 -3.0068 28 6 10.7383 1.0306 -2.0046 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1064 4.2064 -0.0006 35 1 7.4199 4.7204 0.1817 36 1 6.5159 6.1311 0.7824 37 1 8.7419 8.0072 -2.9103 38 1 6.4469 1.7368 0.7329 39 1 8.5982 -0.7227 -1.9341 40 1 7.3927 0.3203 -2.8620 41 1 10.7953 0.0056 -1.6383 42 1 11.3046 1.1175 -2.9319 43 1 11.1567 1.7068 -1.2591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136861621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:09 Heat of formation + Delta-G solvation = -41.647700 kcal Electronic energy + Delta-G solvation = -27653.684472 eV Core-core repulsion = 23700.962377 eV Total energy + Delta-G solvation = -3952.722095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.80868 -41.08160 -40.77650 -37.94159 -37.46194 -36.04531 -35.69238 -33.83455 -32.54752 -30.89310 -29.89307 -29.49798 -26.21751 -25.09195 -24.47075 -23.33528 -22.48883 -21.78555 -21.17207 -21.05084 -19.32465 -19.11683 -18.60448 -18.28521 -17.45538 -17.24185 -16.61359 -16.57413 -15.84714 -15.82966 -15.45283 -15.15287 -14.82999 -14.62999 -14.54031 -14.38646 -14.21544 -13.98536 -13.75706 -13.51341 -13.15977 -12.95541 -12.81916 -12.69906 -12.52140 -12.36501 -12.31904 -12.13945 -11.86671 -11.48499 -11.42698 -11.37301 -11.27178 -11.12988 -10.95489 -10.88976 -10.24948 -9.71357 -8.37679 -6.44229 0.12815 0.98664 1.16652 1.26004 1.30517 1.34774 1.37932 1.76684 1.99355 2.18783 2.23021 2.80376 2.92463 3.49755 3.60216 3.70008 3.82526 3.85832 4.08562 4.10239 4.13207 4.17236 4.31903 4.39827 4.40312 4.45746 4.65009 4.70054 4.82876 4.86948 4.92895 4.95087 5.00809 5.02573 5.17226 5.20404 5.21965 5.40222 5.43445 5.50523 5.73463 6.14505 6.19386 6.51912 6.60906 6.84451 7.04049 7.13731 8.80530 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.004915 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.400157 B = 5695.396718 C = 7742.724682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.558 3.442 5 O -0.540 6.540 6 C -0.316 4.316 7 C 0.107 3.893 8 N -0.310 5.310 9 N -0.326 5.326 10 C 0.244 3.756 11 C -0.513 4.513 12 H 0.019 0.981 13 C 0.017 3.983 14 N -0.940 5.940 15 Si 0.945 3.055 16 H -0.256 1.256 17 H -0.244 1.244 18 H -0.274 1.274 19 C 0.373 3.627 20 N -0.641 5.641 21 C 0.524 3.476 22 O -0.530 6.530 23 C -0.187 4.187 24 H 0.164 0.836 25 C -0.124 4.124 26 C -0.133 4.133 27 H 0.078 0.922 28 C -0.114 4.114 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.233 0.767 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.270 0.730 38 H 0.437 0.563 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -19.918 10.058 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.017 4.017 3 O -0.270 6.270 4 C 0.405 3.595 5 O -0.432 6.432 6 C -0.331 4.331 7 C -0.080 4.080 8 N -0.130 5.130 9 N -0.104 5.104 10 C 0.124 3.876 11 C -0.551 4.551 12 H 0.038 0.962 13 C -0.182 4.182 14 N -0.580 5.580 15 Si 0.766 3.234 16 H -0.180 1.180 17 H -0.168 1.168 18 H -0.199 1.199 19 C 0.144 3.856 20 N -0.297 5.297 21 C 0.312 3.688 22 O -0.402 6.402 23 C -0.208 4.208 24 H 0.181 0.819 25 C -0.161 4.161 26 C -0.152 4.152 27 H 0.096 0.904 28 C -0.171 4.171 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.279 0.721 39 H 0.164 0.836 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.716 -18.155 9.299 20.734 hybrid contribution 0.365 -0.330 0.084 0.499 sum -3.350 -18.485 9.383 20.999 Atomic orbital electron populations 1.21824 0.90329 1.04373 1.03716 1.23305 0.96981 0.78845 1.02614 1.86547 1.22293 1.33892 1.84311 1.19464 0.80934 0.87345 0.71763 1.90771 1.60856 1.42410 1.49118 1.18992 0.90392 0.93155 1.30595 1.24583 1.01376 0.87324 0.94704 1.77254 0.86653 1.23750 1.25345 1.49174 1.07362 1.03580 1.50334 1.19810 0.78377 0.91330 0.98042 1.20819 1.08531 1.28597 0.97193 0.96225 1.25767 0.99673 0.94360 0.98356 1.70036 1.30852 1.32277 1.24798 0.85780 0.78240 0.80377 0.79000 1.18009 1.16765 1.19901 1.18188 0.88772 0.82470 0.96194 1.42583 1.24747 1.36493 1.25904 1.20943 0.82251 0.84967 0.80589 1.91020 1.72626 1.38099 1.38491 1.22289 0.98566 1.00647 0.99273 0.81892 1.23201 1.00432 0.95147 0.97315 1.22446 0.94026 1.01064 0.97707 0.90411 1.21383 0.90671 1.02595 1.02483 0.88002 0.90998 0.91630 0.91748 0.90748 0.75043 0.92876 0.92658 0.92057 0.72112 0.83637 0.90311 0.89514 0.91361 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.29 71.98 0.74 -1.09 16 2 C 0.06 1.08 6.20 71.98 0.45 1.52 16 3 O -0.35 -9.33 10.07 -57.43 -0.58 -9.91 16 4 C 0.56 17.94 7.94 70.05 0.56 18.50 16 5 O -0.54 -18.20 16.09 19.54 0.31 -17.89 16 6 C -0.32 -11.47 6.15 -20.02 -0.12 -11.59 16 7 C 0.11 3.77 11.86 85.72 1.02 4.79 16 8 N -0.31 -13.70 12.47 -56.22 -0.70 -14.40 16 9 N -0.33 -15.14 3.53 -347.30 -1.23 -16.37 16 10 C 0.24 12.24 4.36 85.63 0.37 12.61 16 11 C -0.51 -31.47 8.77 25.60 0.22 -31.25 16 12 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 13 C 0.02 1.01 5.47 84.66 0.46 1.47 16 14 N -0.94 -60.91 13.96 21.45 0.30 -60.61 16 15 Si 0.94 43.44 27.47 68.60 1.88 45.33 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 C 0.37 15.10 6.64 132.54 0.88 15.98 16 20 N -0.64 -22.08 4.38 -307.36 -1.35 -23.43 16 21 C 0.52 19.88 6.68 87.66 0.59 20.46 16 22 O -0.53 -27.02 13.99 -3.00 -0.04 -27.06 16 23 C -0.19 -4.94 5.91 -11.54 -0.07 -5.00 16 24 H 0.16 2.95 8.14 -2.39 -0.02 2.93 16 25 C -0.12 -2.80 9.88 30.60 0.30 -2.50 16 26 C -0.13 -3.58 5.92 -10.79 -0.06 -3.65 16 27 H 0.08 2.79 7.67 -2.39 -0.02 2.77 16 28 C -0.11 -2.16 10.19 71.98 0.73 -1.43 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.23 5.84 8.06 -2.91 -0.02 5.82 16 35 H 0.05 2.56 5.98 -2.39 -0.01 2.54 16 36 H 0.06 2.63 7.57 -2.38 -0.02 2.61 16 37 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 38 H 0.44 11.39 8.82 -92.71 -0.82 10.57 16 39 H 0.15 2.09 8.05 -2.38 -0.02 2.07 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.09 1.13 7.90 -2.39 -0.02 1.11 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -85.05 372.64 4.84 -80.22 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.17 Total: 25.29 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 6.07 Total: 18.83 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -2.98 Total: -114.81 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -0.31 Total: -54.86 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal Total: -85.05 4.84 -80.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136861621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.572 kcal (2) G-P(sol) polarization free energy of solvation -85.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds