Wall clock time and date at job start Tue Mar 31 2020 13:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47314 * 2 1 4 4 C 1.34830 * 117.00118 * 180.02562 * 3 2 1 5 5 O 1.21595 * 119.99618 * 359.97438 * 4 3 2 6 6 C 1.46745 * 120.00136 * 180.02562 * 4 3 2 7 7 C 1.41469 * 126.51474 * 359.97438 * 6 4 3 8 8 N 1.30308 * 108.16938 * 180.02562 * 7 6 4 9 9 N 1.39892 * 109.21205 * 359.77179 * 8 7 6 10 10 C 1.46490 * 125.74687 * 180.27945 * 9 8 7 11 11 C 1.50698 * 109.47363 * 272.40022 * 10 9 8 12 12 H 1.08001 * 119.99858 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00446 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00071 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00146 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47509 * 89.99607 * 15 13 11 17 17 H 1.48495 * 109.47456 * 210.00035 * 15 13 11 18 18 H 1.48502 * 109.47076 * 329.99767 * 15 13 11 19 19 C 1.34771 * 108.50796 * 0.38857 * 9 8 7 20 20 N 1.38482 * 126.42854 * 179.88532 * 19 9 8 21 21 C 1.34777 * 119.99945 * 289.78591 * 20 19 9 22 22 O 1.21266 * 119.99986 * 355.69606 * 21 20 19 23 23 C 1.50703 * 119.99954 * 175.69706 * 21 20 19 24 24 H 1.09002 * 115.56638 * 34.31218 * 23 21 20 25 25 C 1.53004 * 117.49719 * 248.62352 * 23 21 20 26 26 C 1.53006 * 60.00092 * 252.51047 * 25 23 21 27 27 H 1.08992 * 117.52157 * 107.47614 * 26 25 23 28 28 C 1.52996 * 117.49963 * 252.51559 * 26 25 23 29 29 H 1.08998 * 109.47635 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47063 * 300.00167 * 1 2 3 31 31 H 1.09000 * 109.47109 * 59.99672 * 1 2 3 32 32 H 1.09002 * 109.46598 * 239.99779 * 2 1 3 33 33 H 1.09000 * 109.47109 * 120.00328 * 2 1 3 34 34 H 1.08003 * 125.91317 * 359.97438 * 7 6 4 35 35 H 1.09004 * 109.47474 * 32.40179 * 10 9 8 36 36 H 1.09005 * 109.47576 * 152.40112 * 10 9 8 37 37 H 0.97001 * 120.00233 * 180.02562 * 14 13 11 38 38 H 0.96997 * 120.00421 * 109.78759 * 20 19 9 39 39 H 1.09002 * 117.49759 * 145.02533 * 25 23 21 40 40 H 1.08999 * 117.49842 * 359.97438 * 25 23 21 41 41 H 1.09003 * 109.47446 * 128.62117 * 28 26 25 42 42 H 1.09001 * 109.47360 * 8.61736 * 28 26 25 43 43 H 1.09007 * 109.47317 * 248.61837 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3507 1.5456 -0.0005 5 8 4.0913 0.5812 -0.0005 6 6 3.9117 2.9016 0.0000 7 6 3.1828 4.1141 0.0006 8 7 4.0346 5.1002 0.0004 9 7 5.3352 4.5851 0.0049 10 6 6.5686 5.3753 0.0120 11 6 6.9657 5.6995 -1.4051 12 1 6.3601 5.3512 -2.2287 13 6 8.1028 6.4397 -1.6504 14 7 8.8406 6.8633 -0.6476 15 14 8.5945 6.8420 -3.4070 16 1 7.9705 8.1267 -3.8139 17 1 10.0723 6.9605 -3.4926 18 1 8.1317 5.7587 -4.3111 19 6 5.2624 3.2393 -0.0007 20 7 6.3305 2.3580 -0.0009 21 6 7.1051 2.2383 -1.0973 22 8 6.8212 2.8432 -2.1093 23 6 8.3240 1.3526 -1.0657 24 1 8.2376 0.4551 -0.4533 25 6 9.6931 2.0324 -1.1335 26 6 9.1624 1.2588 -2.3422 27 1 8.8320 1.8372 -3.2049 28 6 9.8150 -0.0878 -2.6613 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.1067 4.2063 0.0003 35 1 6.4041 6.3008 0.5639 36 1 7.3639 4.8035 0.4904 37 1 9.6404 7.3844 -0.8201 38 1 6.5213 1.8268 0.7879 39 1 10.5073 1.5820 -0.5658 40 1 9.7121 3.1201 -1.2014 41 1 9.0429 -0.8498 -2.7671 42 1 10.4906 -0.3650 -1.8520 43 1 10.3766 -0.0079 -3.5921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136861663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:13 Heat of formation + Delta-G solvation = -26.867460 kcal Electronic energy + Delta-G solvation = -27750.411346 eV Core-core repulsion = 23798.330170 eV Total energy + Delta-G solvation = -3952.081176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15930 -39.68089 -39.28185 -36.61315 -36.15846 -34.37441 -33.75677 -31.95785 -31.44080 -29.39984 -28.47351 -27.40786 -24.75356 -23.72525 -23.09511 -22.11275 -21.10215 -20.40127 -19.89161 -19.46195 -17.65020 -17.35746 -16.85723 -16.51827 -16.28476 -15.77824 -14.94569 -14.67440 -14.60991 -14.22851 -13.82159 -13.67539 -13.56848 -13.31458 -13.18793 -13.01852 -12.75182 -12.68115 -12.27823 -11.88750 -11.85890 -11.76412 -11.59429 -11.24669 -11.05854 -10.94778 -10.74241 -10.40165 -10.27801 -10.15617 -9.96270 -9.92858 -9.84160 -9.55387 -9.31327 -8.62324 -8.58382 -8.12760 -6.24868 -4.28248 1.71334 2.54791 2.73508 2.89073 3.09129 3.25310 3.31138 3.41327 3.56180 3.71239 4.04469 4.35562 4.82211 4.89471 4.92340 4.93662 4.98935 5.03842 5.13268 5.23426 5.29092 5.35629 5.42161 5.56063 5.70470 5.70950 5.72740 5.79061 5.87163 5.91549 6.06639 6.08667 6.29701 6.38561 6.49721 6.68484 6.75467 6.83628 7.05853 7.51260 7.67625 7.78598 7.82880 8.13908 8.26921 8.60930 8.80277 9.37288 10.83783 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.004829 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.682946 B = 5796.439673 C = 7564.447808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.357 6.357 4 C 0.552 3.448 5 O -0.529 6.529 6 C -0.311 4.311 7 C 0.088 3.912 8 N -0.279 5.279 9 N -0.301 5.301 10 C 0.250 3.750 11 C -0.517 4.517 12 H 0.073 0.927 13 C 0.067 3.933 14 N -0.897 5.897 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.268 1.268 19 C 0.388 3.612 20 N -0.654 5.654 21 C 0.550 3.450 22 O -0.485 6.485 23 C -0.184 4.184 24 H 0.122 0.878 25 C -0.144 4.144 26 C -0.125 4.125 27 H 0.118 0.882 28 C -0.121 4.121 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.190 0.810 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.266 0.734 38 H 0.416 0.584 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -14.439 3.274 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.399 3.601 5 O -0.420 6.420 6 C -0.327 4.327 7 C -0.099 4.099 8 N -0.100 5.100 9 N -0.080 5.080 10 C 0.134 3.866 11 C -0.556 4.556 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.536 5.536 15 Si 0.730 3.270 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.193 1.193 19 C 0.157 3.843 20 N -0.308 5.308 21 C 0.337 3.663 22 O -0.355 6.355 23 C -0.205 4.205 24 H 0.140 0.860 25 C -0.182 4.182 26 C -0.143 4.143 27 H 0.136 0.864 28 C -0.178 4.178 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.207 0.793 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.255 0.745 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.263 -12.803 2.546 14.075 hybrid contribution 0.312 -0.960 -0.366 1.074 sum -4.950 -13.763 2.179 14.788 Atomic orbital electron populations 1.21793 0.92958 1.02602 1.03506 1.22902 0.94966 0.80783 1.02284 1.86554 1.24305 1.31461 1.85085 1.19801 0.79896 0.88457 0.71959 1.90787 1.60272 1.42369 1.48537 1.18805 0.91270 0.91684 1.30948 1.23836 0.99893 0.88509 0.97643 1.77242 0.86896 1.22209 1.23685 1.49920 1.07790 1.03272 1.47041 1.19934 0.75322 0.91236 1.00157 1.21234 1.09615 1.33970 0.90770 0.90931 1.24839 0.95646 0.95109 0.97978 1.69921 1.16070 1.36767 1.30829 0.86379 0.77428 0.79026 0.84185 1.20431 1.21004 1.19286 1.17640 0.87099 0.82939 0.96579 1.42346 1.29210 1.41289 1.17992 1.19695 0.82779 0.81329 0.82519 1.90810 1.70138 1.43801 1.30722 1.22128 0.91183 1.01708 1.05518 0.85979 1.23188 0.93233 1.01237 1.00511 1.22378 1.00509 0.98826 0.92603 0.86440 1.21383 0.99972 0.94735 1.01680 0.90578 0.91528 0.91494 0.91564 0.91558 0.79312 0.92227 0.93103 0.92411 0.74519 0.88012 0.87137 0.92124 0.92483 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.74 6.20 37.16 0.23 0.97 16 3 O -0.36 -5.29 10.07 -40.85 -0.41 -5.70 16 4 C 0.55 9.72 7.94 34.17 0.27 9.99 16 5 O -0.53 -9.92 16.09 -19.34 -0.31 -10.23 16 6 C -0.31 -5.94 6.15 -104.86 -0.64 -6.59 16 7 C 0.09 1.59 11.86 -16.97 -0.20 1.39 16 8 N -0.28 -6.03 12.47 30.88 0.39 -5.65 16 9 N -0.30 -6.89 3.58 -61.13 -0.22 -7.11 16 10 C 0.25 6.31 6.00 -5.20 -0.03 6.28 16 11 C -0.52 -14.36 8.17 -34.44 -0.28 -14.64 16 12 H 0.07 2.18 7.38 -52.49 -0.39 1.80 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 14 N -0.90 -24.98 13.29 55.43 0.74 -24.25 16 15 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 19 C 0.39 8.04 6.49 -153.42 -1.00 7.04 16 20 N -0.65 -12.04 4.43 -11.08 -0.05 -12.09 16 21 C 0.55 10.82 7.46 -10.98 -0.08 10.74 16 22 O -0.49 -11.75 14.54 5.57 0.08 -11.67 16 23 C -0.18 -2.78 5.91 -91.76 -0.54 -3.32 16 24 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 25 C -0.14 -2.11 9.88 -26.73 -0.26 -2.38 16 26 C -0.12 -1.81 5.92 -90.62 -0.54 -2.35 16 27 H 0.12 2.01 7.67 -51.93 -0.40 1.61 16 28 C -0.12 -1.31 10.19 37.16 0.38 -0.93 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.19 2.62 8.06 -52.48 -0.42 2.20 16 35 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.05 1.29 8.02 -51.93 -0.42 0.87 16 37 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.42 6.20 8.82 -40.82 -0.36 5.84 16 39 H 0.10 1.18 8.05 -51.93 -0.42 0.77 16 40 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 378.84 15.07 5.71 5.71 Total: -1.00 -33.17 378.84 -7.69 -40.86 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.18 Total: 6.13 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -2.41 Total: 7.10 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.85 Total: -49.10 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.64 Total: -27.61 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.17 -7.69 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136861663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.992 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds