Wall clock time and date at job start Tue Mar 31 2020 13:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45197 * 109.47097 * 2 1 4 4 C 1.34231 * 117.00287 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99688 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00288 * 180.02562 * 4 3 2 7 7 C 1.50699 * 112.85105 * 48.80128 * 6 4 3 8 8 O 1.21288 * 120.00174 * 131.19716 * 7 6 4 9 9 N 1.34783 * 119.99545 * 311.19831 * 7 6 4 10 10 C 1.40164 * 119.99138 * 179.97438 * 9 7 6 11 11 C 1.40404 * 125.97605 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86642 * 179.97438 * 11 10 9 13 13 N 1.34976 * 107.86266 * 359.97438 * 12 11 10 14 14 C 1.46496 * 125.97854 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47019 * 124.99686 * 14 13 12 16 16 H 1.07998 * 120.00132 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99922 * 180.02562 * 15 14 13 18 18 N 1.31524 * 119.99791 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00343 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47050 * 59.99826 * 19 17 15 21 21 H 1.48496 * 109.47578 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47189 * 300.00475 * 19 17 15 23 23 N 1.31220 * 125.96556 * 179.68812 * 10 9 7 24 24 C 1.53782 * 113.61498 * 180.02562 * 6 4 3 25 25 C 1.53781 * 87.08260 * 89.19810 * 24 6 4 26 26 C 1.53786 * 87.17350 * 25.39213 * 25 24 6 27 27 H 1.08995 * 109.47099 * 299.99972 * 1 2 3 28 28 H 1.09004 * 109.47697 * 59.99950 * 1 2 3 29 29 H 1.09005 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47388 * 240.00260 * 2 1 3 31 31 H 1.08995 * 109.47474 * 120.00090 * 2 1 3 32 32 H 0.96987 * 120.00362 * 359.97438 * 9 7 6 33 33 H 1.07998 * 126.06841 * 359.96065 * 11 10 9 34 34 H 1.07999 * 126.06999 * 180.02562 * 12 11 10 35 35 H 1.08999 * 109.47126 * 245.00201 * 14 13 12 36 36 H 1.09001 * 109.46873 * 5.00318 * 14 13 12 37 37 H 0.97001 * 119.99914 * 179.97438 * 18 17 15 38 38 H 1.09001 * 113.61250 * 334.64628 * 24 6 4 39 39 H 1.08996 * 113.68722 * 203.75942 * 24 6 4 40 40 H 1.09002 * 113.61445 * 139.98212 * 25 24 6 41 41 H 1.09002 * 113.61408 * 270.79943 * 25 24 6 42 42 H 1.08993 * 113.61491 * 89.15923 * 26 25 24 43 43 H 1.09000 * 113.61138 * 220.06261 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 6 3.2996 3.8272 1.0458 8 8 4.0065 4.4793 1.7847 9 7 1.9585 3.8983 1.1598 10 6 1.3809 4.7255 2.1328 11 6 2.0762 5.5305 3.0493 12 6 1.1635 6.1718 3.8140 13 7 -0.0637 5.7911 3.4008 14 6 -1.3394 6.2471 3.9583 15 6 -2.1946 6.8163 2.8556 16 1 -1.8250 6.8360 1.8410 17 6 -3.4489 7.3120 3.1421 18 7 -3.8988 7.2885 4.3778 19 14 -4.5093 8.0169 1.7754 20 1 -4.7624 6.9686 0.7545 21 1 -5.8018 8.4804 2.3406 22 1 -3.8062 9.1627 1.1443 23 7 0.0957 4.8877 2.3422 24 6 5.4582 2.9682 -0.0013 25 6 5.3790 2.9463 -1.5369 26 6 3.9843 3.5791 -1.3981 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.3932 3.3772 0.5686 33 1 3.1493 5.6213 3.1295 34 1 1.3785 6.8660 4.6129 35 1 -1.8554 5.4057 4.4208 36 1 -1.1540 7.0163 4.7080 37 1 -4.7811 7.6376 4.5794 38 1 5.9131 2.0742 0.4252 39 1 5.8781 3.8899 0.4011 40 1 6.1074 3.5968 -2.0210 41 1 5.3625 1.9414 -1.9590 42 1 3.9992 4.6687 -1.3782 43 1 3.2510 3.1775 -2.0975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152572982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:04 Heat of formation + Delta-G solvation = -17.727012 kcal Electronic energy + Delta-G solvation = -27240.907389 eV Core-core repulsion = 23289.222573 eV Total energy + Delta-G solvation = -3951.684816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76360 -40.52947 -39.51372 -37.95769 -36.56085 -34.79860 -33.37159 -32.02344 -31.03195 -29.35691 -28.31537 -26.52965 -26.10774 -24.06763 -23.19628 -22.28243 -21.92541 -20.50776 -19.72962 -19.63679 -18.11902 -17.26369 -16.89126 -16.61919 -16.58868 -16.11980 -15.49306 -15.05123 -14.98519 -14.74982 -14.27633 -14.18344 -13.83664 -13.48740 -13.12020 -12.87590 -12.75053 -12.55504 -12.33745 -12.24659 -12.16474 -11.87055 -11.81041 -11.65588 -11.37733 -11.06290 -10.87679 -10.86916 -10.83269 -10.68392 -10.46519 -10.26639 -10.01215 -9.61026 -9.51917 -8.64155 -8.15054 -7.49799 -6.25511 -4.30718 1.64359 2.01030 2.38145 2.73782 2.91366 3.24571 3.27979 3.32322 3.66389 3.76917 3.83953 4.04623 4.30383 4.30448 4.39989 4.56357 4.68157 4.71642 4.97848 5.00643 5.09661 5.29019 5.38922 5.42146 5.50869 5.52256 5.57490 5.58119 5.70415 5.79491 5.81065 5.97739 6.13073 6.23307 6.45902 6.57283 6.84133 7.03746 7.32845 7.37881 7.52921 7.69410 7.86980 8.02526 8.15239 8.61539 8.78572 9.34914 10.83237 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014957 B = 0.003227 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.626768 B = 8675.425490 C = 9460.977588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.066 3.934 3 O -0.356 6.356 4 C 0.492 3.508 5 O -0.490 6.490 6 C -0.110 4.110 7 C 0.538 3.462 8 O -0.504 6.504 9 N -0.619 5.619 10 C 0.255 3.745 11 C -0.288 4.288 12 C 0.052 3.948 13 N -0.318 5.318 14 C 0.258 3.742 15 C -0.529 4.529 16 H 0.069 0.931 17 C 0.063 3.937 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.300 5.300 24 C -0.096 4.096 25 C -0.142 4.142 26 C -0.108 4.108 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.417 0.583 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.268 0.732 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.601 -11.356 -10.558 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.007 4.007 3 O -0.273 6.273 4 C 0.333 3.667 5 O -0.377 6.377 6 C -0.114 4.114 7 C 0.322 3.678 8 O -0.378 6.378 9 N -0.268 5.268 10 C 0.002 3.998 11 C -0.319 4.319 12 C -0.098 4.098 13 N -0.100 5.100 14 C 0.141 3.859 15 C -0.568 4.568 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.200 1.200 23 N -0.131 5.131 24 C -0.133 4.133 25 C -0.179 4.179 26 C -0.146 4.146 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.255 0.745 33 H 0.177 0.823 34 H 0.186 0.814 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.830 -11.469 -10.215 20.668 hybrid contribution -0.372 0.183 -0.555 0.693 sum 13.458 -11.286 -10.770 20.603 Atomic orbital electron populations 1.21861 0.91960 1.03252 1.04364 1.23137 0.95842 0.79046 1.02704 1.86406 1.23666 1.33600 1.83599 1.22446 0.80985 0.90671 0.72557 1.90665 1.60430 1.42029 1.44550 1.22119 0.99949 0.90109 0.99266 1.19635 0.81528 0.82661 0.83977 1.90658 1.61179 1.43636 1.42299 1.42527 1.06507 1.43703 1.34052 1.19110 0.91505 0.95966 0.93224 1.21510 1.01063 1.06893 1.02461 1.22563 0.85227 1.01026 1.00995 1.49114 1.07299 1.30615 1.22939 1.19750 0.76015 0.95606 0.94529 1.21218 1.00362 1.40517 0.94672 0.91321 1.24943 0.97429 0.95546 0.96115 1.69913 1.19249 1.45910 1.18304 0.86383 0.79102 0.79445 0.81548 1.19918 1.21042 1.20036 1.77351 1.13703 1.13977 1.08062 1.22867 0.88444 1.05251 0.96749 1.22937 0.96639 1.01824 0.96531 1.22984 0.98943 1.01887 0.90797 0.90781 0.91124 0.90018 0.90963 0.90960 0.74518 0.82320 0.81437 0.93708 0.92517 0.92259 0.89225 0.86930 0.89814 0.89432 0.87468 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.07 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.02 8.01 -39.26 -0.31 -4.33 16 4 C 0.49 5.88 6.75 36.01 0.24 6.12 16 5 O -0.49 -6.53 15.50 -18.75 -0.29 -6.82 16 6 C -0.11 -1.24 1.22 -155.90 -0.19 -1.43 16 7 C 0.54 7.97 6.89 -10.98 -0.08 7.89 16 8 O -0.50 -8.61 13.03 5.55 0.07 -8.54 16 9 N -0.62 -10.04 5.22 -11.13 -0.06 -10.09 16 10 C 0.25 5.14 8.11 -154.38 -1.25 3.89 16 11 C -0.29 -5.68 9.61 -39.83 -0.38 -6.06 16 12 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.33 3.67 -62.56 -0.23 -7.56 16 14 C 0.26 6.51 6.26 -5.19 -0.03 6.48 16 15 C -0.53 -14.59 9.23 -34.44 -0.32 -14.91 16 16 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.90 -25.15 13.29 55.43 0.74 -24.41 16 19 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 N -0.30 -6.88 12.42 31.44 0.39 -6.49 16 24 C -0.10 -0.94 6.78 -25.92 -0.18 -1.11 16 25 C -0.14 -1.08 7.73 -25.92 -0.20 -1.28 16 26 C -0.11 -0.92 7.22 -25.82 -0.19 -1.11 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.58 8.13 -51.92 -0.42 0.16 16 31 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.42 6.06 6.80 -40.82 -0.28 5.78 16 33 H 0.16 3.01 5.92 -52.49 -0.31 2.70 16 34 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.09 0.92 7.43 -51.93 -0.39 0.53 16 39 H 0.11 1.11 7.44 -51.93 -0.39 0.72 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 42 H 0.11 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -32.30 366.26 -7.41 -39.71 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.97 Total: 6.01 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.25 Total: 0.89 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.84 Total: -48.55 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.53 Total: -19.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.30 -7.41 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152572982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.981 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds