Wall clock time and date at job start Tue Mar 31 2020 13:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45197 * 109.47097 * 2 1 4 4 C 1.34231 * 117.00287 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99688 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00288 * 180.02562 * 4 3 2 7 7 C 1.50699 * 112.85105 * 48.80128 * 6 4 3 8 8 O 1.21288 * 120.00174 * 131.19716 * 7 6 4 9 9 N 1.34783 * 119.99545 * 311.19831 * 7 6 4 10 10 C 1.40164 * 119.99138 * 179.97438 * 9 7 6 11 11 C 1.40404 * 125.97605 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86642 * 179.97438 * 11 10 9 13 13 N 1.34976 * 107.86266 * 359.97438 * 12 11 10 14 14 C 1.46496 * 125.97854 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47019 * 124.99686 * 14 13 12 16 16 H 1.07998 * 120.00132 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99922 * 180.02562 * 15 14 13 18 18 N 1.31524 * 119.99791 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00343 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47050 * 59.99826 * 19 17 15 21 21 H 1.48496 * 109.47578 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47189 * 300.00475 * 19 17 15 23 23 N 1.31220 * 125.96556 * 179.68812 * 10 9 7 24 24 C 1.53782 * 113.61498 * 180.02562 * 6 4 3 25 25 C 1.53781 * 87.08260 * 89.19810 * 24 6 4 26 26 C 1.53786 * 87.17350 * 25.39213 * 25 24 6 27 27 H 1.08995 * 109.47099 * 299.99972 * 1 2 3 28 28 H 1.09004 * 109.47697 * 59.99950 * 1 2 3 29 29 H 1.09005 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47388 * 240.00260 * 2 1 3 31 31 H 1.08995 * 109.47474 * 120.00090 * 2 1 3 32 32 H 0.96987 * 120.00362 * 359.97438 * 9 7 6 33 33 H 1.07998 * 126.06841 * 359.96065 * 11 10 9 34 34 H 1.07999 * 126.06999 * 180.02562 * 12 11 10 35 35 H 1.08999 * 109.47126 * 245.00201 * 14 13 12 36 36 H 1.09001 * 109.46873 * 5.00318 * 14 13 12 37 37 H 0.97001 * 119.99914 * 179.97438 * 18 17 15 38 38 H 1.09001 * 113.61250 * 334.64628 * 24 6 4 39 39 H 1.08996 * 113.68722 * 203.75942 * 24 6 4 40 40 H 1.09002 * 113.61445 * 139.98212 * 25 24 6 41 41 H 1.09002 * 113.61408 * 270.79943 * 25 24 6 42 42 H 1.08993 * 113.61491 * 89.15923 * 26 25 24 43 43 H 1.09000 * 113.61138 * 220.06261 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 6 3.2996 3.8272 1.0458 8 8 4.0065 4.4793 1.7847 9 7 1.9585 3.8983 1.1598 10 6 1.3809 4.7255 2.1328 11 6 2.0762 5.5305 3.0493 12 6 1.1635 6.1718 3.8140 13 7 -0.0637 5.7911 3.4008 14 6 -1.3394 6.2471 3.9583 15 6 -2.1946 6.8163 2.8556 16 1 -1.8250 6.8360 1.8410 17 6 -3.4489 7.3120 3.1421 18 7 -3.8988 7.2885 4.3778 19 14 -4.5093 8.0169 1.7754 20 1 -4.7624 6.9686 0.7545 21 1 -5.8018 8.4804 2.3406 22 1 -3.8062 9.1627 1.1443 23 7 0.0957 4.8877 2.3422 24 6 5.4582 2.9682 -0.0013 25 6 5.3790 2.9463 -1.5369 26 6 3.9843 3.5791 -1.3981 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.3932 3.3772 0.5686 33 1 3.1493 5.6213 3.1295 34 1 1.3785 6.8660 4.6129 35 1 -1.8554 5.4057 4.4208 36 1 -1.1540 7.0163 4.7080 37 1 -4.7811 7.6376 4.5794 38 1 5.9131 2.0742 0.4252 39 1 5.8781 3.8899 0.4011 40 1 6.1074 3.5968 -2.0210 41 1 5.3625 1.9414 -1.9590 42 1 3.9992 4.6687 -1.3782 43 1 3.2510 3.1775 -2.0975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152572982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:03 Heat of formation + Delta-G solvation = -36.201440 kcal Electronic energy + Delta-G solvation = -27241.708500 eV Core-core repulsion = 23289.222573 eV Total energy + Delta-G solvation = -3952.485927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.78071 -42.01185 -40.65498 -38.93828 -37.48359 -36.28423 -35.28926 -32.96940 -32.61496 -30.98828 -29.44537 -28.24462 -26.84140 -25.23944 -24.66393 -23.34717 -22.99304 -22.03588 -21.15948 -20.51700 -19.25329 -18.68386 -18.20792 -18.16226 -17.73084 -17.07728 -17.06851 -16.40001 -16.28077 -15.83896 -15.64088 -15.50556 -15.03493 -14.57791 -14.36030 -14.24010 -13.84884 -13.79038 -13.68551 -13.44963 -13.29586 -12.99819 -12.95088 -12.73737 -12.58486 -12.53486 -12.28050 -12.15348 -12.05794 -11.64722 -11.62011 -11.58386 -11.48255 -11.40498 -10.89148 -10.71220 -9.78222 -9.15944 -8.32565 -6.46615 0.61521 0.89851 1.24134 1.30544 1.39773 1.41315 1.50611 1.53229 2.17391 2.26294 2.39579 2.91502 2.99583 3.24713 3.46672 3.49835 3.70975 3.97047 3.98075 3.99861 4.25777 4.28039 4.31773 4.63438 4.68867 4.71845 4.75678 4.83581 4.88058 4.89025 4.91672 4.93376 5.01409 5.02933 5.07551 5.10432 5.29778 5.37041 5.57034 5.79559 5.87624 6.15432 6.27571 6.41803 6.64606 6.85928 7.04345 7.23378 8.75106 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014957 B = 0.003227 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.626768 B = 8675.425490 C = 9460.977588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.494 3.506 5 O -0.506 6.506 6 C -0.113 4.113 7 C 0.540 3.460 8 O -0.527 6.527 9 N -0.617 5.617 10 C 0.261 3.739 11 C -0.293 4.293 12 C 0.058 3.942 13 N -0.342 5.342 14 C 0.272 3.728 15 C -0.548 4.548 16 H 0.053 0.947 17 C 0.019 3.981 18 N -0.921 5.921 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.269 1.269 23 N -0.340 5.340 24 C -0.098 4.098 25 C -0.127 4.127 26 C -0.103 4.103 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.424 0.576 33 H 0.169 0.831 34 H 0.203 0.797 35 H 0.021 0.979 36 H 0.059 0.941 37 H 0.273 0.727 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.338 -11.339 -12.284 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.336 3.664 5 O -0.393 6.393 6 C -0.117 4.117 7 C 0.326 3.674 8 O -0.401 6.401 9 N -0.267 5.267 10 C 0.007 3.993 11 C -0.324 4.324 12 C -0.091 4.091 13 N -0.124 5.124 14 C 0.154 3.846 15 C -0.587 4.587 16 H 0.072 0.928 17 C -0.181 4.181 18 N -0.560 5.560 19 Si 0.795 3.205 20 H -0.198 1.198 21 H -0.199 1.199 22 H -0.194 1.194 23 N -0.171 5.171 24 C -0.135 4.135 25 C -0.164 4.164 26 C -0.141 4.141 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.263 0.737 33 H 0.186 0.814 34 H 0.220 0.780 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.130 0.870 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.585 -11.469 -11.953 22.071 hybrid contribution -0.507 0.103 0.004 0.517 sum 14.078 -11.366 -11.949 21.683 Atomic orbital electron populations 1.21873 0.91148 1.04492 1.03495 1.23354 0.96453 0.78173 1.03291 1.86406 1.23358 1.34927 1.83316 1.22512 0.81080 0.90656 0.72108 1.90657 1.60772 1.42464 1.45423 1.22298 1.00436 0.89304 0.99680 1.20297 0.80663 0.82417 0.84044 1.90632 1.61467 1.44712 1.43287 1.42701 1.07210 1.43299 1.33445 1.19457 0.90940 0.95526 0.93376 1.21712 1.01437 1.06871 1.02412 1.23183 0.83943 1.00713 1.01222 1.48879 1.07421 1.32026 1.24030 1.19351 0.76829 0.94480 0.93958 1.21375 1.01392 1.41330 0.94555 0.92834 1.25735 0.98406 0.95576 0.98400 1.69993 1.19788 1.46301 1.19889 0.85410 0.77681 0.78733 0.78687 1.19760 1.19864 1.19429 1.77275 1.15338 1.15338 1.09190 1.22937 0.86979 1.04910 0.98722 1.22884 0.96449 1.02355 0.94684 1.23094 1.00018 1.02163 0.88808 0.92750 0.90785 0.87763 0.89423 0.91334 0.73692 0.81352 0.78032 0.96084 0.92288 0.91836 0.89863 0.87020 0.87517 0.89234 0.86955 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.29 71.98 0.74 -1.59 16 2 C 0.06 1.05 6.19 71.98 0.45 1.49 16 3 O -0.36 -7.91 8.01 -51.43 -0.41 -8.32 16 4 C 0.49 11.27 6.75 71.24 0.48 11.76 16 5 O -0.51 -12.90 15.50 21.96 0.34 -12.56 16 6 C -0.11 -2.39 1.22 -53.09 -0.06 -2.45 16 7 C 0.54 15.58 6.89 87.66 0.60 16.18 16 8 O -0.53 -17.59 13.03 -3.05 -0.04 -17.63 16 9 N -0.62 -19.80 5.22 -307.51 -1.60 -21.41 16 10 C 0.26 10.56 8.11 133.32 1.08 11.64 16 11 C -0.29 -11.41 9.61 22.11 0.21 -11.20 16 12 C 0.06 2.27 11.44 83.52 0.96 3.23 16 13 N -0.34 -15.99 3.67 -351.84 -1.29 -17.28 16 14 C 0.27 14.06 6.26 85.63 0.54 14.60 16 15 C -0.55 -30.72 9.23 25.60 0.24 -30.48 16 16 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 17 C 0.02 1.05 5.46 84.65 0.46 1.52 16 18 N -0.92 -51.91 13.29 21.45 0.28 -51.63 16 19 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 N -0.34 -15.90 12.42 -54.45 -0.68 -16.58 16 24 C -0.10 -1.77 6.78 31.12 0.21 -1.56 16 25 C -0.13 -1.58 7.73 31.12 0.24 -1.34 16 26 C -0.10 -1.51 7.22 31.18 0.23 -1.29 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.09 1.26 8.13 -2.38 -0.02 1.24 16 31 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.42 12.24 6.80 -92.72 -0.63 11.61 16 33 H 0.17 6.23 5.92 -2.91 -0.02 6.21 16 34 H 0.20 6.18 8.06 -2.91 -0.02 6.16 16 35 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 37 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.08 1.62 7.43 -2.39 -0.02 1.60 16 39 H 0.11 2.05 7.44 -2.39 -0.02 2.03 16 40 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 42 H 0.11 1.57 8.10 -2.39 -0.02 1.55 16 43 H 0.10 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -69.46 366.26 5.40 -64.06 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.41 Total: 25.71 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 6.37 Total: 10.49 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -3.29 Total: -106.89 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.11 Total: -38.51 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.46 5.40 -64.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152572982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.861 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds