Wall clock time and date at job start Tue Mar 31 2020 13:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.46936 * 2 1 4 4 C 1.34655 * 117.00089 * 180.02562 * 3 2 1 5 5 O 1.21516 * 119.99767 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00309 * 180.02562 * 4 3 2 7 7 C 1.40135 * 120.00276 * 175.37625 * 6 4 3 8 8 C 1.38849 * 120.00220 * 215.09044 * 7 6 4 9 9 C 1.38060 * 119.99906 * 180.02562 * 8 7 6 10 10 C 1.38845 * 120.00269 * 359.97438 * 9 8 7 11 11 N 1.40132 * 120.00248 * 180.02562 * 10 9 8 12 12 C 1.34778 * 119.99788 * 35.10032 * 11 10 9 13 13 O 1.21595 * 119.99684 * 355.37649 * 12 11 10 14 14 N 1.34778 * 119.99846 * 175.38260 * 12 11 10 15 15 C 1.46500 * 119.99583 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.47282 * 324.99163 * 15 14 12 17 17 C 1.52998 * 109.47598 * 84.99701 * 15 14 12 18 18 C 1.50699 * 109.46859 * 204.99791 * 15 14 12 19 19 H 1.08001 * 119.99929 * 359.97438 * 18 15 14 20 20 C 1.37876 * 120.00310 * 180.02562 * 18 15 14 21 21 N 1.31519 * 119.99854 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 120.00118 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46680 * 269.99515 * 22 20 18 24 24 H 1.48490 * 109.47420 * 29.99550 * 22 20 18 25 25 H 1.48504 * 109.47156 * 149.99923 * 22 20 18 26 26 C 1.38854 * 119.99752 * 0.27836 * 10 9 8 27 27 C 1.38055 * 120.00127 * 359.44969 * 26 10 9 28 28 H 1.09001 * 109.46804 * 299.99305 * 1 2 3 29 29 H 1.08997 * 109.47393 * 59.99743 * 1 2 3 30 30 H 1.09005 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46804 * 240.00695 * 2 1 3 32 32 H 1.08997 * 109.47393 * 120.00257 * 2 1 3 33 33 H 0.97005 * 120.00067 * 355.37648 * 6 4 3 34 34 H 1.08004 * 120.00436 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.99740 * 179.97438 * 9 8 7 36 36 H 0.97001 * 119.99869 * 215.09130 * 11 10 9 37 37 H 0.96997 * 120.00287 * 359.97438 * 14 12 11 38 38 H 1.08991 * 109.47367 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.46810 * 300.00102 * 17 15 14 40 40 H 1.09001 * 109.46770 * 59.99675 * 17 15 14 41 41 H 0.96993 * 119.99952 * 180.02562 * 21 20 18 42 42 H 1.08000 * 119.99900 * 179.70078 * 26 10 9 43 43 H 1.07997 * 120.00172 * 180.25442 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5455 -0.0005 5 8 4.0891 0.5818 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 5.2497 2.9759 0.0972 8 6 5.7576 4.0634 0.7954 9 6 7.1227 4.2460 0.8908 10 6 7.9878 3.3420 0.2890 11 7 9.3734 3.5270 0.3862 12 6 9.9073 4.0411 1.5119 13 8 9.1814 4.4224 2.4099 14 7 11.2456 4.1328 1.6422 15 6 11.8258 4.6911 2.8661 16 1 11.1835 5.4873 3.2423 17 6 11.9454 3.5904 3.9221 18 6 13.1929 5.2488 2.5647 19 1 13.5901 5.1926 1.5620 20 6 13.9373 5.8299 3.5694 21 7 13.4539 5.8979 4.7906 22 14 15.6316 6.5220 3.1956 23 1 16.6533 5.4622 3.3915 24 1 15.6735 6.9960 1.7891 25 1 15.9151 7.6577 4.1095 26 6 7.4798 2.2574 -0.4137 27 6 6.1148 2.0717 -0.5043 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.2756 3.5591 -0.0670 34 1 5.0847 4.7669 1.2633 35 1 7.5177 5.0921 1.4335 36 1 9.9484 3.2850 -0.3567 37 1 11.8246 3.8284 0.9260 38 1 12.3775 4.0057 4.8324 39 1 10.9566 3.1870 4.1400 40 1 12.5878 2.7942 3.5458 41 1 13.9773 6.3071 5.4973 42 1 8.1527 1.5569 -0.8859 43 1 5.7198 1.2258 -1.0474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155490134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:55 Heat of formation + Delta-G solvation = -77.805260 kcal Electronic energy + Delta-G solvation = -25847.553534 eV Core-core repulsion = 21893.263529 eV Total energy + Delta-G solvation = -3954.290004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08270 -40.08666 -38.70568 -37.00427 -35.53972 -34.69598 -33.66277 -32.37827 -31.94349 -30.86789 -29.27393 -27.76051 -25.25614 -24.23496 -23.16258 -22.60223 -21.71424 -20.83523 -19.87202 -19.19076 -18.15878 -17.61901 -17.43908 -17.01142 -16.45387 -15.93809 -15.12661 -15.02054 -14.70516 -14.37067 -14.15209 -14.01493 -13.95124 -13.43603 -13.21303 -13.07722 -12.94564 -12.69896 -12.38138 -12.32543 -12.02408 -11.75690 -11.30999 -11.11409 -11.04994 -10.89995 -10.87444 -10.73176 -10.60677 -10.32949 -10.23823 -9.59842 -9.28501 -9.04704 -8.82641 -8.57553 -8.03181 -7.54670 -6.13297 -4.22586 1.24585 1.51209 1.81691 2.54488 3.19420 3.23960 3.31244 3.34112 3.66758 3.82206 4.04537 4.31724 4.54193 4.57593 4.86206 4.88604 4.98277 5.07349 5.17641 5.19482 5.35853 5.40226 5.45555 5.53662 5.57248 5.83404 5.97713 6.17136 6.36120 6.47517 6.49657 6.71381 6.80941 6.98647 7.09795 7.12928 7.20556 7.25689 7.45713 7.61609 7.83007 7.99347 8.00958 8.14853 8.72098 8.84209 9.23159 9.45878 10.92722 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.041849 B = 0.001949 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.907122 B =14363.911549 C =14476.239016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.371 6.371 4 C 0.647 3.353 5 O -0.555 6.555 6 N -0.646 5.646 7 C 0.120 3.880 8 C -0.117 4.117 9 C -0.103 4.103 10 C 0.173 3.827 11 N -0.696 5.696 12 C 0.693 3.307 13 O -0.582 6.582 14 N -0.719 5.719 15 C 0.280 3.720 16 H 0.050 0.950 17 C -0.148 4.148 18 C -0.534 4.534 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.903 3.097 23 H -0.280 1.280 24 H -0.274 1.274 25 H -0.285 1.285 26 C -0.138 4.138 27 C -0.098 4.098 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.415 0.585 34 H 0.128 0.872 35 H 0.151 0.849 36 H 0.403 0.597 37 H 0.386 0.614 38 H 0.091 0.909 39 H 0.015 0.985 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.128 0.872 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.330 -8.484 -12.932 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.007 3.993 3 O -0.285 6.285 4 C 0.401 3.599 5 O -0.443 6.443 6 N -0.298 5.298 7 C 0.027 3.973 8 C -0.138 4.138 9 C -0.124 4.124 10 C 0.076 3.924 11 N -0.344 5.344 12 C 0.393 3.607 13 O -0.460 6.460 14 N -0.369 5.369 15 C 0.178 3.822 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.572 4.572 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.206 1.206 24 H -0.199 1.199 25 H -0.211 1.211 26 C -0.160 4.160 27 C -0.118 4.118 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.251 0.749 34 H 0.146 0.854 35 H 0.168 0.832 36 H 0.238 0.762 37 H 0.219 0.781 38 H 0.109 0.891 39 H 0.035 0.965 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.569 -8.587 -11.811 26.047 hybrid contribution 1.252 0.253 -0.789 1.501 sum -20.317 -8.334 -12.600 25.318 Atomic orbital electron populations 1.21840 0.92423 1.03191 1.03597 1.23003 0.94863 0.78362 1.03053 1.86233 1.21721 1.33665 1.86881 1.18068 0.81282 0.84202 0.76368 1.91013 1.59381 1.39588 1.54323 1.41903 1.06383 1.06102 1.75371 1.17407 0.80170 0.98604 1.01144 1.20751 0.95519 0.98443 0.99066 1.21235 0.91385 0.99812 0.99961 1.17619 0.82690 0.93724 0.98349 1.42879 1.05491 1.68148 1.17921 1.16168 0.83744 0.79059 0.81721 1.90867 1.59724 1.54588 1.40826 1.45867 1.02966 1.65565 1.22548 1.18692 0.92932 0.91808 0.78757 0.93215 1.22106 0.97612 0.98260 1.02735 1.21204 1.00763 1.39469 0.95809 0.92070 1.24883 0.98403 0.95577 0.94848 1.69906 1.37652 1.43612 1.00828 0.86428 0.83652 0.78647 0.78231 1.20563 1.19885 1.21060 1.20761 0.95114 0.96555 1.03573 1.20952 0.91985 0.99570 0.99302 0.91381 0.91437 0.89869 0.90986 0.90913 0.74861 0.85388 0.83189 0.76241 0.78146 0.89088 0.96545 0.95525 0.92540 0.85439 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.29 37.16 0.38 -0.32 16 2 C 0.08 0.60 6.19 37.16 0.23 0.83 16 3 O -0.37 -3.57 10.27 -40.37 -0.41 -3.98 16 4 C 0.65 7.62 8.59 54.05 0.46 8.08 16 5 O -0.56 -8.12 13.57 -19.28 -0.26 -8.38 16 6 N -0.65 -6.62 5.35 -14.23 -0.08 -6.70 16 7 C 0.12 1.49 6.30 -83.61 -0.53 0.96 16 8 C -0.12 -1.49 9.96 -39.42 -0.39 -1.88 16 9 C -0.10 -1.59 8.69 -39.42 -0.34 -1.94 16 10 C 0.17 2.61 6.30 -83.61 -0.53 2.08 16 11 N -0.70 -10.65 5.35 -14.18 -0.08 -10.73 16 12 C 0.69 13.93 8.37 -86.92 -0.73 13.20 16 13 O -0.58 -13.87 13.44 5.28 0.07 -13.80 16 14 N -0.72 -14.79 5.07 -59.81 -0.30 -15.09 16 15 C 0.28 7.08 2.56 -69.08 -0.18 6.91 16 16 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 17 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 18 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -24.71 11.32 55.43 0.63 -24.08 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.14 -1.80 9.96 -39.42 -0.39 -2.19 16 27 C -0.10 -1.28 8.69 -39.42 -0.34 -1.62 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.42 2.93 8.93 -40.82 -0.36 2.56 16 34 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.15 2.65 6.22 -52.49 -0.33 2.33 16 36 H 0.40 4.70 8.84 -40.82 -0.36 4.34 16 37 H 0.39 6.75 8.56 -40.82 -0.35 6.40 16 38 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.14 1.84 6.22 -52.49 -0.33 1.51 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -33.24 365.99 -8.12 -41.36 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.78 Total: 12.33 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -2.40 Total: 8.12 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.17 Total: -56.60 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.61 Total: -26.16 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.24 -8.12 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155490134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.446 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds