Wall clock time and date at job start Tue Mar 31 2020 13:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.46936 * 2 1 4 4 C 1.34655 * 117.00089 * 180.02562 * 3 2 1 5 5 O 1.21516 * 119.99767 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00309 * 180.02562 * 4 3 2 7 7 C 1.40135 * 120.00276 * 175.37625 * 6 4 3 8 8 C 1.38849 * 120.00220 * 215.09044 * 7 6 4 9 9 C 1.38060 * 119.99906 * 180.02562 * 8 7 6 10 10 C 1.38845 * 120.00269 * 359.97438 * 9 8 7 11 11 N 1.40132 * 120.00248 * 180.02562 * 10 9 8 12 12 C 1.34778 * 119.99788 * 35.10032 * 11 10 9 13 13 O 1.21595 * 119.99684 * 355.37649 * 12 11 10 14 14 N 1.34778 * 119.99846 * 175.38260 * 12 11 10 15 15 C 1.46500 * 119.99583 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.47282 * 324.99163 * 15 14 12 17 17 C 1.52998 * 109.47598 * 84.99701 * 15 14 12 18 18 C 1.50699 * 109.46859 * 204.99791 * 15 14 12 19 19 H 1.08001 * 119.99929 * 359.97438 * 18 15 14 20 20 C 1.37876 * 120.00310 * 180.02562 * 18 15 14 21 21 N 1.31519 * 119.99854 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 120.00118 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46680 * 269.99515 * 22 20 18 24 24 H 1.48490 * 109.47420 * 29.99550 * 22 20 18 25 25 H 1.48504 * 109.47156 * 149.99923 * 22 20 18 26 26 C 1.38854 * 119.99752 * 0.27836 * 10 9 8 27 27 C 1.38055 * 120.00127 * 359.44969 * 26 10 9 28 28 H 1.09001 * 109.46804 * 299.99305 * 1 2 3 29 29 H 1.08997 * 109.47393 * 59.99743 * 1 2 3 30 30 H 1.09005 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46804 * 240.00695 * 2 1 3 32 32 H 1.08997 * 109.47393 * 120.00257 * 2 1 3 33 33 H 0.97005 * 120.00067 * 355.37648 * 6 4 3 34 34 H 1.08004 * 120.00436 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.99740 * 179.97438 * 9 8 7 36 36 H 0.97001 * 119.99869 * 215.09130 * 11 10 9 37 37 H 0.96997 * 120.00287 * 359.97438 * 14 12 11 38 38 H 1.08991 * 109.47367 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.46810 * 300.00102 * 17 15 14 40 40 H 1.09001 * 109.46770 * 59.99675 * 17 15 14 41 41 H 0.96993 * 119.99952 * 180.02562 * 21 20 18 42 42 H 1.08000 * 119.99900 * 179.70078 * 26 10 9 43 43 H 1.07997 * 120.00172 * 180.25442 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5455 -0.0005 5 8 4.0891 0.5818 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 5.2497 2.9759 0.0972 8 6 5.7576 4.0634 0.7954 9 6 7.1227 4.2460 0.8908 10 6 7.9878 3.3420 0.2890 11 7 9.3734 3.5270 0.3862 12 6 9.9073 4.0411 1.5119 13 8 9.1814 4.4224 2.4099 14 7 11.2456 4.1328 1.6422 15 6 11.8258 4.6911 2.8661 16 1 11.1835 5.4873 3.2423 17 6 11.9454 3.5904 3.9221 18 6 13.1929 5.2488 2.5647 19 1 13.5901 5.1926 1.5620 20 6 13.9373 5.8299 3.5694 21 7 13.4539 5.8979 4.7906 22 14 15.6316 6.5220 3.1956 23 1 16.6533 5.4622 3.3915 24 1 15.6735 6.9960 1.7891 25 1 15.9151 7.6577 4.1095 26 6 7.4798 2.2574 -0.4137 27 6 6.1148 2.0717 -0.5043 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.2756 3.5591 -0.0670 34 1 5.0847 4.7669 1.2633 35 1 7.5177 5.0921 1.4335 36 1 9.9484 3.2850 -0.3567 37 1 11.8246 3.8284 0.9260 38 1 12.3775 4.0057 4.8324 39 1 10.9566 3.1870 4.1400 40 1 12.5878 2.7942 3.5458 41 1 13.9773 6.3071 5.4973 42 1 8.1527 1.5569 -0.8859 43 1 5.7198 1.2258 -1.0474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155490134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:54 Heat of formation + Delta-G solvation = -101.471349 kcal Electronic energy + Delta-G solvation = -25848.579772 eV Core-core repulsion = 21893.263529 eV Total energy + Delta-G solvation = -3955.316243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.03911 -41.43165 -39.88567 -38.00050 -36.93179 -36.23857 -34.97446 -34.19017 -32.53749 -31.94440 -30.97792 -29.06832 -27.31935 -25.14694 -24.11030 -23.73701 -22.92874 -22.11522 -21.52077 -20.19964 -19.64986 -18.79652 -18.57226 -17.91593 -17.74630 -17.29152 -16.86868 -16.42034 -15.97027 -15.69927 -15.28637 -15.19522 -14.93203 -14.78243 -14.41620 -14.26032 -14.08155 -13.87401 -13.65428 -13.52499 -12.99799 -12.98399 -12.86608 -12.70346 -12.54145 -12.36277 -12.27429 -12.12276 -11.98163 -11.72336 -11.53951 -11.15696 -11.08198 -10.60975 -10.55143 -9.91346 -9.79461 -8.72364 -8.16010 -6.33229 0.16811 0.42910 0.98384 1.46817 1.47553 1.57521 1.59657 1.80405 2.20027 2.43660 2.85018 3.07243 3.14640 3.46246 3.92691 4.02655 4.03484 4.09004 4.32831 4.36203 4.42080 4.52469 4.69262 4.75460 4.80970 4.94117 4.94437 5.06070 5.10899 5.14571 5.26899 5.32852 5.36144 5.45205 5.47302 5.56426 5.61762 5.68469 5.86891 6.05519 6.10770 6.24197 6.28684 6.74543 7.14155 7.25162 7.35581 7.69361 8.90443 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.041849 B = 0.001949 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.907122 B =14363.911549 C =14476.239016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 O -0.366 6.366 4 C 0.647 3.353 5 O -0.586 6.586 6 N -0.635 5.635 7 C 0.126 3.874 8 C -0.112 4.112 9 C -0.122 4.122 10 C 0.148 3.852 11 N -0.676 5.676 12 C 0.692 3.308 13 O -0.624 6.624 14 N -0.714 5.714 15 C 0.288 3.712 16 H 0.002 0.998 17 C -0.135 4.135 18 C -0.545 4.545 19 H 0.075 0.925 20 C 0.014 3.986 21 N -0.917 5.917 22 Si 0.974 3.026 23 H -0.272 1.272 24 H -0.264 1.264 25 H -0.287 1.287 26 C -0.125 4.125 27 C -0.104 4.104 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.431 0.569 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.422 0.578 37 H 0.404 0.596 38 H 0.068 0.932 39 H 0.010 0.990 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.153 0.847 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.836 -9.339 -14.867 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.002 4.002 3 O -0.280 6.280 4 C 0.401 3.599 5 O -0.476 6.476 6 N -0.288 5.288 7 C 0.033 3.967 8 C -0.133 4.133 9 C -0.143 4.143 10 C 0.053 3.947 11 N -0.325 5.325 12 C 0.393 3.607 13 O -0.505 6.505 14 N -0.366 5.366 15 C 0.184 3.816 16 H 0.020 0.980 17 C -0.194 4.194 18 C -0.584 4.584 19 H 0.093 0.907 20 C -0.186 4.186 21 N -0.555 5.555 22 Si 0.799 3.201 23 H -0.197 1.197 24 H -0.188 1.188 25 H -0.213 1.213 26 C -0.146 4.146 27 C -0.125 4.125 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.271 0.729 34 H 0.169 0.831 35 H 0.140 0.860 36 H 0.260 0.740 37 H 0.239 0.761 38 H 0.086 0.914 39 H 0.029 0.971 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.171 0.829 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.121 -9.460 -13.827 27.749 hybrid contribution 1.218 0.468 -0.218 1.323 sum -20.902 -8.992 -14.045 26.740 Atomic orbital electron populations 1.21857 0.90055 1.04597 1.03821 1.23307 0.96648 0.77281 1.02915 1.86266 1.20246 1.35094 1.86401 1.18203 0.81804 0.84047 0.75856 1.90991 1.60246 1.40639 1.55747 1.41786 1.05805 1.06517 1.74660 1.17457 0.81186 0.97965 1.00107 1.20862 0.94752 0.98945 0.98693 1.21139 0.92845 0.99637 1.00720 1.17793 0.82160 0.94887 0.99908 1.42491 1.06071 1.67010 1.16929 1.16256 0.83203 0.78845 0.82414 1.90847 1.60572 1.56234 1.42805 1.45442 1.03582 1.65755 1.21847 1.18265 0.92138 0.90752 0.80426 0.98021 1.21928 0.97228 0.98337 1.01860 1.21526 1.00932 1.39434 0.96472 0.90713 1.25797 1.02367 0.95833 0.94590 1.70056 1.39227 1.44399 1.01850 0.85313 0.78744 0.77785 0.78273 1.19739 1.18800 1.21315 1.20930 0.95501 0.95852 1.02339 1.21106 0.92184 0.99731 0.99439 0.91351 0.90966 0.87855 0.90820 0.91472 0.72930 0.83063 0.85990 0.73981 0.76101 0.91364 0.97128 0.94164 0.92546 0.82902 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 71.98 0.74 -0.30 16 2 C 0.07 0.97 6.19 71.98 0.45 1.42 16 3 O -0.37 -6.49 10.27 -55.64 -0.57 -7.06 16 4 C 0.65 14.30 8.59 129.79 1.12 15.42 16 5 O -0.59 -16.53 13.57 19.79 0.27 -16.26 16 6 N -0.63 -11.88 5.35 -429.33 -2.30 -14.18 16 7 C 0.13 2.97 6.30 38.11 0.24 3.21 16 8 C -0.11 -2.76 9.96 22.37 0.22 -2.53 16 9 C -0.12 -3.83 8.69 22.37 0.19 -3.63 16 10 C 0.15 4.38 6.30 38.11 0.24 4.62 16 11 N -0.68 -20.22 5.35 -317.04 -1.70 -21.92 16 12 C 0.69 28.20 8.37 179.05 1.50 29.70 16 13 O -0.62 -30.91 13.44 -4.01 -0.05 -30.96 16 14 N -0.71 -29.44 5.07 -461.40 -2.34 -31.78 16 15 C 0.29 14.92 2.56 44.24 0.11 15.03 16 16 H 0.00 0.11 7.58 -2.39 -0.02 0.10 16 17 C -0.13 -6.90 9.26 71.98 0.67 -6.23 16 18 C -0.55 -28.54 8.73 25.60 0.22 -28.31 16 19 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 20 C 0.01 0.76 5.30 84.65 0.45 1.21 16 21 N -0.92 -52.38 11.32 21.45 0.24 -52.14 16 22 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 26 C -0.13 -3.04 9.96 22.37 0.22 -2.82 16 27 C -0.10 -2.56 8.69 22.37 0.19 -2.37 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.43 5.16 8.93 -92.70 -0.83 4.33 16 34 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.12 4.55 6.22 -2.91 -0.02 4.53 16 36 H 0.42 9.13 8.84 -92.71 -0.82 8.31 16 37 H 0.40 13.66 8.56 -92.71 -0.79 12.86 16 38 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.14 3.51 6.22 -2.91 -0.02 3.49 16 Total: -1.00 -73.37 365.99 0.78 -72.58 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -1.36 Total: 33.65 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 6.57 Total: 24.41 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -6.09 Total: -120.02 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -0.36 Total: -54.28 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -73.37 0.78 -72.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155490134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.887 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds