Wall clock time and date at job start Tue Mar 31 2020 13:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46751 * 2 1 4 4 C 1.34656 * 116.99618 * 179.97438 * 3 2 1 5 5 O 1.21522 * 120.00364 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99836 * 179.97438 * 4 3 2 7 7 C 1.40136 * 120.00061 * 185.25986 * 6 4 3 8 8 C 1.38850 * 119.99931 * 212.94299 * 7 6 4 9 9 C 1.38057 * 119.99996 * 180.02562 * 8 7 6 10 10 C 1.38856 * 120.00272 * 359.97438 * 9 8 7 11 11 N 1.40129 * 120.00620 * 180.02562 * 10 9 8 12 12 C 1.34769 * 119.99946 * 143.05900 * 11 10 9 13 13 O 1.21588 * 120.00560 * 4.82041 * 12 11 10 14 14 N 1.34781 * 120.00015 * 184.81907 * 12 11 10 15 15 C 1.46496 * 120.00393 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.47000 * 35.00194 * 15 14 12 17 17 C 1.52995 * 109.47086 * 274.99957 * 15 14 12 18 18 C 1.50702 * 109.47180 * 155.00290 * 15 14 12 19 19 H 1.08002 * 119.99870 * 5.61975 * 18 15 14 20 20 C 1.37882 * 119.99878 * 185.62636 * 18 15 14 21 21 N 1.31510 * 119.99568 * 197.79003 * 20 18 15 22 22 Si 1.86800 * 119.99774 * 18.06489 * 20 18 15 23 23 H 1.48503 * 109.46702 * 179.72393 * 22 20 18 24 24 H 1.48497 * 109.47433 * 299.72242 * 22 20 18 25 25 H 1.48500 * 109.47177 * 59.72988 * 22 20 18 26 26 C 1.38851 * 119.99464 * 0.27800 * 10 9 8 27 27 C 1.38062 * 120.00275 * 359.44448 * 26 10 9 28 28 H 1.09002 * 109.46793 * 299.99734 * 1 2 3 29 29 H 1.08997 * 109.46962 * 60.00344 * 1 2 3 30 30 H 1.08999 * 109.46575 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47041 * 239.99787 * 2 1 3 32 32 H 1.09007 * 109.46990 * 119.99729 * 2 1 3 33 33 H 0.96998 * 120.00329 * 5.26444 * 6 4 3 34 34 H 1.07995 * 120.00414 * 359.97438 * 8 7 6 35 35 H 1.07998 * 120.00319 * 179.97438 * 9 8 7 36 36 H 0.97003 * 119.99695 * 323.05899 * 11 10 9 37 37 H 0.97006 * 119.99443 * 0.02562 * 14 12 11 38 38 H 1.09001 * 109.47762 * 175.32589 * 17 15 14 39 39 H 1.09002 * 109.47672 * 295.33350 * 17 15 14 40 40 H 1.09009 * 109.47398 * 55.33272 * 17 15 14 41 41 H 0.96998 * 120.00711 * 355.22591 * 21 20 18 42 42 H 1.08000 * 120.00357 * 179.70584 * 26 10 9 43 43 H 1.08003 * 120.00666 * 180.25207 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 0.0005 5 8 4.0892 0.5818 0.0005 6 7 3.8640 2.7909 0.0000 7 6 5.2486 2.9764 -0.1107 8 6 5.8593 4.0455 0.5313 9 6 7.2233 4.2286 0.4218 10 6 7.9846 3.3434 -0.3298 11 7 9.3692 3.5289 -0.4406 12 6 10.1921 2.4619 -0.4654 13 8 9.7296 1.3375 -0.4802 14 7 11.5279 2.6412 -0.4738 15 6 12.4225 1.4814 -0.5014 16 1 11.9727 0.6898 -1.1006 17 6 12.6468 0.9764 0.9253 18 6 13.7438 1.8805 -1.1065 19 1 13.9342 2.9144 -1.3537 20 6 14.7095 0.9255 -1.3445 21 7 15.9595 1.2876 -1.5342 22 14 14.2409 -0.8817 -1.4052 23 1 15.4506 -1.6977 -1.6808 24 1 13.6577 -1.2860 -0.1007 25 1 13.2419 -1.0982 -2.4825 26 6 7.3731 2.2774 -0.9761 27 6 6.0099 2.0909 -0.8619 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 3.2764 3.5588 0.0764 34 1 5.2673 4.7342 1.1156 35 1 7.6983 5.0603 0.9208 36 1 9.7352 4.4253 -0.4994 37 1 11.8969 3.5383 -0.4617 38 1 13.2443 0.0651 0.8985 39 1 13.1714 1.7380 1.5022 40 1 11.6843 0.7660 1.3918 41 1 16.1910 2.2286 -1.5757 42 1 7.9644 1.5915 -1.5646 43 1 5.5348 1.2594 -1.3612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155490233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:58 Heat of formation + Delta-G solvation = -77.325948 kcal Electronic energy + Delta-G solvation = -26041.182324 eV Core-core repulsion = 22086.913105 eV Total energy + Delta-G solvation = -3954.269220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11859 -40.17964 -38.80479 -37.06132 -35.63558 -34.80356 -33.75385 -32.42818 -31.97381 -30.95654 -29.81779 -28.03301 -24.84448 -24.20466 -23.21140 -22.82574 -21.50855 -20.86281 -19.87421 -19.27108 -18.39526 -17.75609 -17.57895 -17.00121 -16.89625 -16.43248 -15.28974 -14.90640 -14.75103 -14.41744 -14.11709 -14.02327 -13.87384 -13.42694 -13.24412 -13.19436 -12.91581 -12.75529 -12.53458 -12.38182 -12.18099 -12.02773 -11.80129 -11.63072 -11.44138 -10.90266 -10.89948 -10.49183 -10.47887 -9.99238 -9.81515 -9.67077 -9.52045 -9.06927 -8.89484 -8.32198 -8.24733 -7.65372 -6.58954 -4.21875 1.18233 1.40142 1.77942 2.52236 3.08543 3.39998 3.46795 3.56883 3.62090 3.78282 3.93972 4.42439 4.54337 4.57309 4.76827 4.82825 4.89262 4.92051 5.10795 5.17776 5.33805 5.35564 5.43777 5.45222 5.53927 5.77391 5.97774 6.03512 6.19168 6.36656 6.44822 6.47992 6.56705 6.65865 6.70173 6.92160 7.03754 7.12769 7.16635 7.39846 7.47828 7.78246 7.98543 8.23522 8.61019 8.73602 9.11001 9.46931 10.82068 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.002325 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.958851 B =12038.380802 C =13006.995562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.371 6.371 4 C 0.645 3.355 5 O -0.549 6.549 6 N -0.648 5.648 7 C 0.128 3.872 8 C -0.121 4.121 9 C -0.133 4.133 10 C 0.168 3.832 11 N -0.696 5.696 12 C 0.693 3.307 13 O -0.583 6.583 14 N -0.713 5.713 15 C 0.258 3.742 16 H 0.042 0.958 17 C -0.163 4.163 18 C -0.618 4.618 19 H 0.061 0.939 20 C 0.039 3.961 21 N -0.897 5.897 22 Si 1.042 2.958 23 H -0.284 1.284 24 H -0.270 1.270 25 H -0.280 1.280 26 C -0.098 4.098 27 C -0.099 4.099 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.415 0.585 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.404 0.596 37 H 0.390 0.610 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.268 0.732 42 H 0.146 0.854 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.583 6.610 3.589 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.006 3.994 3 O -0.285 6.285 4 C 0.399 3.601 5 O -0.436 6.436 6 N -0.299 5.299 7 C 0.035 3.965 8 C -0.142 4.142 9 C -0.154 4.154 10 C 0.072 3.928 11 N -0.344 5.344 12 C 0.393 3.607 13 O -0.460 6.460 14 N -0.364 5.364 15 C 0.154 3.846 16 H 0.060 0.940 17 C -0.222 4.222 18 C -0.655 4.655 19 H 0.079 0.921 20 C -0.167 4.167 21 N -0.530 5.530 22 Si 0.870 3.130 23 H -0.209 1.209 24 H -0.196 1.196 25 H -0.206 1.206 26 C -0.119 4.119 27 C -0.119 4.119 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.251 0.749 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.239 0.761 37 H 0.223 0.777 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.164 0.836 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -27.969 3.433 3.398 28.383 hybrid contribution -0.490 2.818 0.274 2.874 sum -28.459 6.251 3.672 29.368 Atomic orbital electron populations 1.21838 0.92391 1.03235 1.03532 1.23025 0.94858 0.78286 1.03192 1.86223 1.21665 1.33758 1.86893 1.18081 0.81354 0.84198 0.76508 1.91078 1.59415 1.39415 1.53656 1.41915 1.06357 1.06120 1.75549 1.17404 0.80652 0.98342 1.00124 1.20488 0.94244 0.98909 1.00580 1.20651 0.93201 1.01506 1.00090 1.17579 0.82292 0.96661 0.96259 1.42800 1.04183 1.09331 1.78114 1.16173 0.82126 0.84133 0.78255 1.90889 1.75470 1.22087 1.57579 1.45575 1.02883 1.11522 1.76376 1.18937 0.88323 0.84027 0.93277 0.94048 1.22539 0.99259 1.01226 0.99164 1.22061 0.99354 0.96693 1.47440 0.92069 1.25682 0.92459 1.05687 0.92900 1.70883 1.16719 1.19759 1.45613 0.84088 0.75855 0.75241 0.77860 1.20923 1.19638 1.20555 1.21284 0.93526 0.98086 0.98982 1.21052 0.93504 0.99341 0.98039 0.91444 0.91425 0.89823 0.90859 0.90887 0.74935 0.85393 0.85239 0.76147 0.77689 0.91973 0.93558 0.95107 0.92137 0.83632 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.29 37.16 0.38 -0.33 16 2 C 0.08 0.62 6.19 37.16 0.23 0.85 16 3 O -0.37 -3.57 10.27 -40.37 -0.41 -3.98 16 4 C 0.65 7.70 8.49 54.06 0.46 8.15 16 5 O -0.55 -8.55 13.79 -19.29 -0.27 -8.81 16 6 N -0.65 -6.36 5.36 -14.22 -0.08 -6.44 16 7 C 0.13 1.53 6.29 -83.61 -0.53 1.00 16 8 C -0.12 -1.23 9.95 -39.42 -0.39 -1.62 16 9 C -0.13 -1.49 9.96 -39.42 -0.39 -1.88 16 10 C 0.17 2.44 6.27 -83.61 -0.52 1.91 16 11 N -0.70 -10.27 5.34 -14.18 -0.08 -10.35 16 12 C 0.69 13.60 8.37 -86.92 -0.73 12.87 16 13 O -0.58 -13.58 13.57 5.29 0.07 -13.51 16 14 N -0.71 -14.42 5.07 -59.82 -0.30 -14.72 16 15 C 0.26 6.25 2.14 -69.09 -0.15 6.10 16 16 H 0.04 1.09 6.22 -51.93 -0.32 0.77 16 17 C -0.16 -3.77 9.16 37.15 0.34 -3.43 16 18 C -0.62 -16.66 9.00 -34.44 -0.31 -16.97 16 19 H 0.06 1.71 7.96 -52.49 -0.42 1.30 16 20 C 0.04 1.11 5.34 -17.82 -0.10 1.01 16 21 N -0.90 -26.64 13.70 55.43 0.76 -25.88 16 22 Si 1.04 25.28 26.43 -169.99 -4.49 20.78 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.17 5.53 56.52 0.31 -5.85 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.10 -1.57 8.68 -39.42 -0.34 -1.91 16 27 C -0.10 -1.44 8.65 -39.42 -0.34 -1.78 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.41 2.58 8.92 -40.82 -0.36 2.22 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.40 4.49 8.84 -40.82 -0.36 4.13 16 37 H 0.39 6.86 8.54 -40.82 -0.35 6.51 16 38 H 0.06 1.45 4.84 -51.93 -0.25 1.20 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 42 H 0.15 2.68 6.38 -52.49 -0.33 2.34 16 43 H 0.14 2.07 6.38 -52.48 -0.33 1.74 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -34.87 361.97 -7.51 -42.38 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.78 Total: 11.09 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.39 Total: 3.99 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.30 Total: -57.39 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.61 Total: -26.31 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -4.49 Total: 20.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.87 -7.51 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155490233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.944 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds