Wall clock time and date at job start Tue Mar 31 2020 13:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46751 * 2 1 4 4 C 1.34656 * 116.99618 * 179.97438 * 3 2 1 5 5 O 1.21522 * 120.00364 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99836 * 179.97438 * 4 3 2 7 7 C 1.40136 * 120.00061 * 185.25986 * 6 4 3 8 8 C 1.38850 * 119.99931 * 212.94299 * 7 6 4 9 9 C 1.38057 * 119.99996 * 180.02562 * 8 7 6 10 10 C 1.38856 * 120.00272 * 359.97438 * 9 8 7 11 11 N 1.40129 * 120.00620 * 180.02562 * 10 9 8 12 12 C 1.34769 * 119.99946 * 143.05900 * 11 10 9 13 13 O 1.21588 * 120.00560 * 4.82041 * 12 11 10 14 14 N 1.34781 * 120.00015 * 184.81907 * 12 11 10 15 15 C 1.46496 * 120.00393 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.47000 * 35.00194 * 15 14 12 17 17 C 1.52995 * 109.47086 * 274.99957 * 15 14 12 18 18 C 1.50702 * 109.47180 * 155.00290 * 15 14 12 19 19 H 1.08002 * 119.99870 * 5.61975 * 18 15 14 20 20 C 1.37882 * 119.99878 * 185.62636 * 18 15 14 21 21 N 1.31510 * 119.99568 * 197.79003 * 20 18 15 22 22 Si 1.86800 * 119.99774 * 18.06489 * 20 18 15 23 23 H 1.48503 * 109.46702 * 179.72393 * 22 20 18 24 24 H 1.48497 * 109.47433 * 299.72242 * 22 20 18 25 25 H 1.48500 * 109.47177 * 59.72988 * 22 20 18 26 26 C 1.38851 * 119.99464 * 0.27800 * 10 9 8 27 27 C 1.38062 * 120.00275 * 359.44448 * 26 10 9 28 28 H 1.09002 * 109.46793 * 299.99734 * 1 2 3 29 29 H 1.08997 * 109.46962 * 60.00344 * 1 2 3 30 30 H 1.08999 * 109.46575 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47041 * 239.99787 * 2 1 3 32 32 H 1.09007 * 109.46990 * 119.99729 * 2 1 3 33 33 H 0.96998 * 120.00329 * 5.26444 * 6 4 3 34 34 H 1.07995 * 120.00414 * 359.97438 * 8 7 6 35 35 H 1.07998 * 120.00319 * 179.97438 * 9 8 7 36 36 H 0.97003 * 119.99695 * 323.05899 * 11 10 9 37 37 H 0.97006 * 119.99443 * 0.02562 * 14 12 11 38 38 H 1.09001 * 109.47762 * 175.32589 * 17 15 14 39 39 H 1.09002 * 109.47672 * 295.33350 * 17 15 14 40 40 H 1.09009 * 109.47398 * 55.33272 * 17 15 14 41 41 H 0.96998 * 120.00711 * 355.22591 * 21 20 18 42 42 H 1.08000 * 120.00357 * 179.70584 * 26 10 9 43 43 H 1.08003 * 120.00666 * 180.25207 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 0.0005 5 8 4.0892 0.5818 0.0005 6 7 3.8640 2.7909 0.0000 7 6 5.2486 2.9764 -0.1107 8 6 5.8593 4.0455 0.5313 9 6 7.2233 4.2286 0.4218 10 6 7.9846 3.3434 -0.3298 11 7 9.3692 3.5289 -0.4406 12 6 10.1921 2.4619 -0.4654 13 8 9.7296 1.3375 -0.4802 14 7 11.5279 2.6412 -0.4738 15 6 12.4225 1.4814 -0.5014 16 1 11.9727 0.6898 -1.1006 17 6 12.6468 0.9764 0.9253 18 6 13.7438 1.8805 -1.1065 19 1 13.9342 2.9144 -1.3537 20 6 14.7095 0.9255 -1.3445 21 7 15.9595 1.2876 -1.5342 22 14 14.2409 -0.8817 -1.4052 23 1 15.4506 -1.6977 -1.6808 24 1 13.6577 -1.2860 -0.1007 25 1 13.2419 -1.0982 -2.4825 26 6 7.3731 2.2774 -0.9761 27 6 6.0099 2.0909 -0.8619 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 3.2764 3.5588 0.0764 34 1 5.2673 4.7342 1.1156 35 1 7.6983 5.0603 0.9208 36 1 9.7352 4.4253 -0.4994 37 1 11.8969 3.5383 -0.4617 38 1 13.2443 0.0651 0.8985 39 1 13.1714 1.7380 1.5022 40 1 11.6843 0.7660 1.3918 41 1 16.1910 2.2286 -1.5757 42 1 7.9644 1.5915 -1.5646 43 1 5.5348 1.2594 -1.3612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155490233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:57 Heat of formation + Delta-G solvation = -103.954320 kcal Electronic energy + Delta-G solvation = -26042.337017 eV Core-core repulsion = 22086.913105 eV Total energy + Delta-G solvation = -3955.423913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.07295 -41.48964 -39.93838 -38.04933 -37.04277 -36.29112 -35.02361 -34.36950 -32.58232 -31.96699 -31.50965 -29.19634 -26.88125 -25.06983 -24.31105 -23.73495 -22.75418 -22.03883 -21.56642 -20.40593 -19.94867 -19.08411 -18.65317 -18.43619 -17.83670 -17.34030 -16.70516 -16.46190 -15.95232 -15.55863 -15.37391 -15.11622 -15.05807 -14.83275 -14.56517 -14.41873 -14.16902 -13.97500 -13.74883 -13.59142 -13.49932 -13.39856 -13.01612 -12.74092 -12.55779 -12.44618 -12.01420 -11.91855 -11.68453 -11.60837 -11.52847 -11.22830 -11.08408 -10.77717 -10.46736 -9.96242 -9.92350 -8.83590 -8.71705 -6.44379 0.14326 0.41195 0.96316 1.45273 1.50890 1.55542 1.67904 1.76222 2.12938 2.40789 2.83497 3.00889 3.04805 3.34864 3.90804 3.99964 4.00890 4.06529 4.29992 4.34960 4.41032 4.45236 4.50544 4.69245 4.72258 4.77817 4.79166 4.92090 5.04875 5.08779 5.10519 5.23942 5.30348 5.33316 5.44185 5.47839 5.53308 5.61410 5.63624 6.00077 6.03267 6.15415 6.22773 6.52794 7.13283 7.14137 7.28439 7.59022 8.59440 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.002325 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.958851 B =12038.380802 C =13006.995562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 O -0.363 6.363 4 C 0.643 3.357 5 O -0.591 6.591 6 N -0.631 5.631 7 C 0.131 3.869 8 C -0.103 4.103 9 C -0.114 4.114 10 C 0.143 3.857 11 N -0.675 5.675 12 C 0.693 3.307 13 O -0.623 6.623 14 N -0.712 5.712 15 C 0.262 3.738 16 H 0.021 0.979 17 C -0.154 4.154 18 C -0.611 4.611 19 H 0.044 0.956 20 C -0.003 4.003 21 N -0.925 5.925 22 Si 1.071 2.929 23 H -0.281 1.281 24 H -0.248 1.248 25 H -0.276 1.276 26 C -0.122 4.122 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.435 0.565 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.423 0.577 37 H 0.404 0.596 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.036 0.964 41 H 0.259 0.741 42 H 0.108 0.892 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.302 8.491 5.298 32.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.003 4.003 3 O -0.277 6.277 4 C 0.397 3.603 5 O -0.481 6.481 6 N -0.285 5.285 7 C 0.037 3.963 8 C -0.123 4.123 9 C -0.135 4.135 10 C 0.048 3.952 11 N -0.325 5.325 12 C 0.393 3.607 13 O -0.503 6.503 14 N -0.364 5.364 15 C 0.156 3.844 16 H 0.039 0.961 17 C -0.213 4.213 18 C -0.649 4.649 19 H 0.062 0.938 20 C -0.205 4.205 21 N -0.560 5.560 22 Si 0.894 3.106 23 H -0.206 1.206 24 H -0.172 1.172 25 H -0.202 1.202 26 C -0.143 4.143 27 C -0.137 4.137 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.275 0.725 34 H 0.194 0.806 35 H 0.185 0.815 36 H 0.262 0.738 37 H 0.239 0.761 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.127 0.873 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -30.758 5.419 5.116 31.648 hybrid contribution 0.191 2.319 -0.280 2.343 sum -30.568 7.738 4.837 31.901 Atomic orbital electron populations 1.21848 0.89695 1.04609 1.03980 1.23308 0.96865 0.77383 1.02716 1.86255 1.20102 1.34907 1.86398 1.18315 0.81807 0.84266 0.75906 1.91064 1.60531 1.40976 1.55553 1.41775 1.05887 1.06260 1.74540 1.17522 0.81408 0.98101 0.99261 1.20968 0.94099 0.98131 0.99108 1.21041 0.93365 1.00956 0.98153 1.17792 0.81956 0.97561 0.97892 1.42437 1.04036 1.08973 1.77027 1.16245 0.81989 0.84607 0.77832 1.90875 1.76079 1.24200 1.59164 1.45234 1.03048 1.11146 1.76971 1.18627 0.87429 0.84794 0.93509 0.96116 1.22404 0.99523 1.01149 0.98219 1.22208 1.00456 0.95772 1.46503 0.93796 1.26749 0.92218 1.09015 0.92488 1.70979 1.17835 1.19136 1.48015 0.83704 0.75871 0.71884 0.79130 1.20647 1.17243 1.20174 1.21040 0.94066 0.98890 1.00350 1.20910 0.93286 1.00029 0.99488 0.90874 0.91012 0.87983 0.91503 0.91387 0.72485 0.80646 0.81467 0.73827 0.76136 0.92416 0.92879 0.94529 0.93161 0.87345 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 10.29 71.98 0.74 -0.34 16 2 C 0.07 1.05 6.19 71.98 0.45 1.49 16 3 O -0.36 -6.55 10.27 -55.66 -0.57 -7.12 16 4 C 0.64 14.85 8.49 129.79 1.10 15.95 16 5 O -0.59 -18.86 13.79 19.77 0.27 -18.59 16 6 N -0.63 -10.96 5.36 -429.31 -2.30 -13.26 16 7 C 0.13 2.86 6.29 38.11 0.24 3.10 16 8 C -0.10 -1.62 9.95 22.37 0.22 -1.39 16 9 C -0.11 -2.09 9.96 22.37 0.22 -1.87 16 10 C 0.14 3.96 6.27 38.11 0.24 4.20 16 11 N -0.67 -19.05 5.34 -317.06 -1.69 -20.75 16 12 C 0.69 27.12 8.37 179.06 1.50 28.62 16 13 O -0.62 -29.77 13.57 -3.99 -0.05 -29.82 16 14 N -0.71 -28.52 5.07 -461.42 -2.34 -30.86 16 15 C 0.26 12.66 2.14 44.24 0.09 12.76 16 16 H 0.02 1.11 6.22 -2.39 -0.01 1.10 16 17 C -0.15 -6.98 9.16 71.98 0.66 -6.32 16 18 C -0.61 -33.24 9.00 25.60 0.23 -33.01 16 19 H 0.04 2.49 7.96 -2.91 -0.02 2.47 16 20 C 0.00 -0.20 5.34 84.66 0.45 0.26 16 21 N -0.92 -55.70 13.70 21.45 0.29 -55.41 16 22 Si 1.07 51.04 26.43 68.60 1.81 52.85 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.25 -10.84 5.53 99.48 0.55 -10.29 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 26 C -0.12 -4.06 8.68 22.37 0.19 -3.87 16 27 C -0.12 -3.47 8.65 22.38 0.19 -3.27 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.43 3.86 8.92 -92.71 -0.83 3.04 16 34 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.42 8.39 8.84 -92.71 -0.82 7.57 16 37 H 0.40 13.82 8.54 -92.70 -0.79 13.03 16 38 H 0.06 2.63 4.84 -2.39 -0.01 2.62 16 39 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.26 15.56 8.73 -92.71 -0.81 14.75 16 42 H 0.11 4.35 6.38 -2.91 -0.02 4.33 16 43 H 0.12 3.84 6.38 -2.91 -0.02 3.82 16 Total: -1.00 -79.03 361.97 0.40 -78.63 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -1.55 Total: 28.02 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.53 Total: 16.30 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -6.04 Total: -120.28 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.35 Total: -55.53 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 1.81 Total: 52.85 kcal Total: -79.03 0.40 -78.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155490233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.323 kcal (2) G-P(sol) polarization free energy of solvation -79.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds