Wall clock time and date at job start Tue Mar 31 2020 13:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46493 * 119.99989 * 2 1 4 4 C 1.50703 * 109.47117 * 274.87442 * 3 2 1 5 5 C 1.38261 * 119.99592 * 355.38292 * 4 3 2 6 6 C 1.38223 * 119.99404 * 180.27332 * 5 4 3 7 7 C 1.38252 * 120.00075 * 359.49401 * 6 5 4 8 8 C 1.38211 * 119.99957 * 0.48114 * 7 6 5 9 9 C 1.38216 * 120.00180 * 175.40040 * 4 3 2 10 10 N 1.48017 * 120.00074 * 359.97438 * 9 4 3 11 11 O 1.21792 * 120.00246 * 174.86257 * 10 9 4 12 12 O 1.21803 * 119.99866 * 354.87105 * 10 9 4 13 13 C 1.34777 * 119.99752 * 179.97438 * 2 1 3 14 14 O 1.21586 * 119.99774 * 180.02562 * 13 2 1 15 15 N 1.34780 * 120.00015 * 0.02562 * 13 2 1 16 16 C 1.46505 * 119.99755 * 179.97438 * 15 13 2 17 17 C 1.52995 * 109.46879 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47044 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47311 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99798 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99897 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00395 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99592 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47562 * 89.99775 * 23 21 19 25 25 H 1.48502 * 109.46797 * 209.99898 * 23 21 19 26 26 H 1.48499 * 109.47096 * 329.99391 * 23 21 19 27 27 H 1.08996 * 109.46938 * 95.38813 * 1 2 3 28 28 H 1.08998 * 109.46961 * 215.38573 * 1 2 3 29 29 H 1.09002 * 109.46826 * 335.39000 * 1 2 3 30 30 H 1.08998 * 109.47321 * 154.88091 * 3 2 1 31 31 H 1.09001 * 109.47340 * 34.87337 * 3 2 1 32 32 H 1.07994 * 120.00303 * 0.02562 * 5 4 3 33 33 H 1.07995 * 119.99250 * 179.72547 * 6 5 4 34 34 H 1.07997 * 119.99895 * 180.25572 * 7 6 5 35 35 H 1.08004 * 119.99917 * 179.76764 * 8 7 6 36 36 H 0.96990 * 120.00182 * 359.97438 * 15 13 2 37 37 H 1.08997 * 109.47144 * 299.99865 * 16 15 13 38 38 H 1.09001 * 109.46848 * 60.00037 * 16 15 13 39 39 H 1.08997 * 109.47239 * 299.99950 * 17 16 15 40 40 H 1.08997 * 109.47539 * 60.00023 * 17 16 15 41 41 H 1.09007 * 109.46822 * 299.99970 * 18 17 16 42 42 H 1.08997 * 109.47082 * 59.99561 * 18 17 16 43 43 H 0.96993 * 120.00042 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3442 1.7641 -1.4157 5 6 1.9027 0.9857 -2.4696 6 6 2.0423 1.4376 -3.7684 7 6 2.6138 2.6725 -4.0130 8 6 3.0547 3.4508 -2.9593 9 6 2.9203 2.9964 -1.6605 10 7 3.3927 3.8298 -0.5322 11 8 3.9841 4.8718 -0.7506 12 8 3.1902 3.4733 0.6148 13 6 2.1389 -1.1672 0.0005 14 8 3.3548 -1.1672 0.0010 15 7 1.4650 -2.3344 0.0005 16 6 2.1975 -3.6032 0.0005 17 6 1.2032 -4.7661 0.0012 18 6 1.9682 -6.0911 0.0018 19 6 0.9889 -7.2366 0.0018 20 1 -0.0729 -7.0392 0.0018 21 6 1.4485 -8.5364 0.0029 22 7 2.7415 -8.7768 0.0034 23 14 0.2345 -9.9563 0.0036 24 1 -0.0869 -10.3335 -1.3962 25 1 0.8343 -11.1199 0.7046 26 1 -1.0088 -9.5441 0.7031 27 1 -0.3633 -0.0965 -1.0231 28 1 -0.3633 -0.8378 0.5951 29 1 -0.3633 0.9343 0.4280 30 1 3.1850 1.1181 0.4362 31 1 1.6491 2.0049 0.5876 32 1 1.4524 0.0229 -2.2784 33 1 1.7015 0.8276 -4.5918 34 1 2.7192 3.0273 -5.0275 35 1 3.5046 4.4138 -3.1506 36 1 0.4951 -2.3344 0.0005 37 1 2.8241 -3.6610 -0.8894 38 1 2.8241 -3.6609 0.8905 39 1 0.5769 -4.7081 0.8913 40 1 0.5762 -4.7086 -0.8885 41 1 2.5948 -6.1493 -0.8882 42 1 2.5949 -6.1484 0.8917 43 1 3.0648 -9.6913 0.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:55 Heat of formation + Delta-G solvation = -5.341557 kcal Electronic energy + Delta-G solvation = -26360.806852 eV Core-core repulsion = 22409.659110 eV Total energy + Delta-G solvation = -3951.147742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.52148 -40.59960 -39.50502 -36.95687 -36.12171 -35.35028 -33.49432 -32.70020 -32.03988 -31.00581 -28.24548 -27.13046 -26.62275 -25.58460 -23.33949 -22.76224 -22.25077 -20.71035 -19.91026 -19.31959 -18.85667 -18.14007 -17.74684 -17.02434 -16.74311 -16.28781 -15.75122 -15.51254 -15.06910 -14.65854 -14.52250 -14.37598 -14.09093 -13.71820 -13.63292 -13.24316 -12.92553 -12.66847 -12.44097 -12.25379 -12.02741 -11.84918 -11.77655 -11.72955 -11.34554 -11.27283 -10.93841 -10.76460 -10.62787 -10.19516 -10.02035 -9.91279 -9.54315 -9.49256 -9.17253 -9.16265 -8.71287 -8.40506 -6.04948 -4.08319 -0.46269 0.51792 1.03780 1.12781 2.45277 2.86299 3.13914 3.28001 3.34702 3.37142 3.86560 3.92280 4.05927 4.27574 4.41385 4.45278 4.55426 4.72666 4.73856 4.96538 5.04151 5.12203 5.28453 5.30855 5.33821 5.39963 5.57255 5.62295 5.68080 5.74777 5.86287 6.11493 6.13396 6.20140 6.43346 6.55972 6.65804 6.88044 6.96307 7.39036 7.59946 7.72336 7.91018 7.93576 8.34112 8.57177 8.98343 9.56027 11.06318 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.002155 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.234423 B =12989.683305 C =13322.516131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.639 5.639 3 C 0.165 3.835 4 C -0.027 4.027 5 C -0.108 4.108 6 C -0.062 4.062 7 C -0.125 4.125 8 C -0.054 4.054 9 C -0.046 4.046 10 N 0.032 4.968 11 O -0.165 6.165 12 O -0.161 6.161 13 C 0.700 3.300 14 O -0.584 6.584 15 N -0.738 5.738 16 C 0.133 3.867 17 C -0.120 4.120 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.395 0.605 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 26.096 -7.051 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.377 5.377 3 C 0.042 3.958 4 C -0.030 4.030 5 C -0.126 4.126 6 C -0.080 4.080 7 C -0.144 4.144 8 C -0.073 4.073 9 C -0.130 4.130 10 N 0.550 4.450 11 O -0.380 6.380 12 O -0.375 6.375 13 C 0.401 3.599 14 O -0.461 6.461 15 N -0.393 5.393 16 C 0.010 3.990 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.230 0.770 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.906 25.508 -7.552 27.051 hybrid contribution -0.981 -0.660 0.166 1.194 sum -5.888 24.848 -7.385 26.582 Atomic orbital electron populations 1.21818 0.79465 1.03695 1.01846 1.47094 1.06496 1.04754 1.79384 1.20648 1.00479 0.84236 0.90462 1.20480 0.92546 0.90602 0.99387 1.21165 1.00061 1.00344 0.91051 1.21695 0.93747 0.95176 0.97391 1.21221 0.99417 0.94488 0.99230 1.21038 0.95808 1.01031 0.89394 1.20892 1.10862 0.94262 0.87009 1.43593 0.98539 1.00715 1.02202 1.94532 1.40104 1.12110 1.91227 1.94523 1.60466 1.75842 1.06693 1.15988 0.85440 0.80405 0.78066 1.90942 1.11527 1.86085 1.57593 1.45544 1.09921 1.05087 1.78788 1.21559 0.95203 0.80248 1.02020 1.21887 0.97829 0.95251 1.00809 1.19026 0.95483 0.89136 0.97709 1.21190 0.92956 0.90926 1.51049 0.92662 1.25032 0.95131 0.99042 0.95265 1.69959 1.12533 1.20263 1.50455 0.86582 0.81240 0.82007 0.78082 1.20670 1.21185 1.19899 0.92607 0.90891 0.90439 0.86415 0.86962 0.83725 0.83907 0.83577 0.82947 0.77034 0.91894 0.91803 0.92732 0.92802 0.96278 0.96208 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 9.69 59.85 0.58 1.07 16 2 N -0.64 -6.69 1.71 -188.74 -0.32 -7.01 16 3 C 0.17 1.75 4.16 -5.20 -0.02 1.73 16 4 C -0.03 -0.27 5.87 -104.62 -0.61 -0.88 16 5 C -0.11 -0.93 9.14 -39.58 -0.36 -1.29 16 6 C -0.06 -0.40 10.05 -39.58 -0.40 -0.80 16 7 C -0.12 -0.72 10.05 -39.59 -0.40 -1.11 16 8 C -0.05 -0.40 9.56 -39.59 -0.38 -0.78 16 9 C -0.05 -0.47 6.84 -79.95 -0.55 -1.01 16 10 N 0.03 0.39 4.45 33.96 0.15 0.54 16 11 O -0.17 -2.05 18.46 -29.46 -0.54 -2.59 16 12 O -0.16 -2.01 15.45 -29.46 -0.46 -2.47 16 13 C 0.70 10.17 7.71 -86.91 -0.67 9.50 16 14 O -0.58 -11.11 15.85 5.29 0.08 -11.02 16 15 N -0.74 -10.09 5.42 -65.22 -0.35 -10.45 16 16 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 17 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 20 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 23 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H 0.06 0.29 7.62 -51.93 -0.40 -0.10 16 28 H 0.07 0.44 6.66 -51.93 -0.35 0.09 16 29 H 0.08 0.38 7.88 -51.93 -0.41 -0.03 16 30 H 0.12 1.56 6.84 -51.93 -0.36 1.21 16 31 H 0.11 1.01 6.66 -51.93 -0.35 0.66 16 32 H 0.15 1.29 5.83 -52.49 -0.31 0.99 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 35 H 0.15 0.91 7.62 -52.48 -0.40 0.51 16 36 H 0.39 4.23 6.32 -40.82 -0.26 3.98 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -34.26 365.48 -9.48 -43.73 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.74 Total: -0.18 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -3.52 Total: -6.41 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.21 Total: -42.72 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.92 Total: -16.08 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.26 -9.48 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.391 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds