Wall clock time and date at job start Tue Mar 31 2020 13:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38875 * 110.99765 * 236.04624 * 2 1 3 5 5 C 1.38962 * 120.17721 * 59.72631 * 4 2 1 6 6 C 1.37950 * 120.06662 * 179.76505 * 5 4 2 7 7 C 1.38613 * 120.42167 * 0.51388 * 6 5 4 8 8 N 1.48018 * 119.82543 * 179.72021 * 7 6 5 9 9 O 1.21794 * 120.00481 * 180.02562 * 8 7 6 10 10 O 1.21807 * 119.99986 * 0.02562 * 8 7 6 11 11 C 1.37749 * 120.35167 * 359.74137 * 7 6 5 12 12 C 1.39733 * 119.92751 * 359.97438 * 11 7 6 13 13 C 1.47432 * 120.20745 * 179.97438 * 12 11 7 14 14 O 1.21602 * 119.99865 * 180.02562 * 13 12 11 15 15 N 1.34775 * 120.00269 * 0.03066 * 13 12 11 16 16 C 1.46493 * 120.00412 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.47531 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47132 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.46922 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00208 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99974 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00261 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99942 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47457 * 59.99852 * 23 21 19 25 25 H 1.48500 * 109.47097 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47096 * 300.00117 * 23 21 19 27 27 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 28 28 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 29 29 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 30 30 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 31 31 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 32 32 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 33 33 H 1.08003 * 119.96522 * 0.02562 * 5 4 2 34 34 H 1.08001 * 119.79220 * 180.23199 * 6 5 4 35 35 H 1.08000 * 120.03589 * 180.02562 * 11 7 6 36 36 H 0.97002 * 119.99679 * 359.97438 * 15 13 12 37 37 H 1.09001 * 109.47117 * 300.00060 * 16 15 13 38 38 H 1.09007 * 109.46764 * 59.99591 * 16 15 13 39 39 H 1.08993 * 109.46771 * 300.00297 * 17 16 15 40 40 H 1.08999 * 109.46600 * 59.99788 * 17 16 15 41 41 H 1.08993 * 109.47700 * 300.00432 * 18 17 16 42 42 H 1.08998 * 109.46946 * 60.00506 * 18 17 16 43 43 H 0.96996 * 120.00376 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9666 -0.7241 -1.0755 5 6 1.6516 -0.3490 -2.3759 6 6 2.1511 -1.0671 -3.4426 7 6 2.9603 -2.1718 -3.2277 8 7 3.4840 -2.9363 -4.3819 9 8 4.1949 -3.9078 -4.1968 10 8 3.2040 -2.5940 -5.5168 11 6 3.2793 -2.5621 -1.9458 12 6 2.7862 -1.8418 -0.8546 13 6 3.1233 -2.2545 0.5200 14 8 2.6917 -1.6252 1.4668 15 7 3.9099 -3.3291 0.7273 16 6 4.2454 -3.7388 2.0932 17 6 5.1431 -4.9770 2.0485 18 6 5.4939 -5.4044 3.4750 19 6 6.3776 -6.6243 3.4308 20 1 6.6610 -7.0517 2.4803 21 6 6.8243 -7.1948 4.6039 22 7 6.4788 -6.6747 5.7613 23 14 7.9203 -8.7065 4.5492 24 1 9.1669 -8.3877 3.8079 25 1 8.2597 -9.1222 5.9338 26 1 7.2050 -9.8119 3.8623 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3633 0.4513 -0.9233 29 1 -0.3633 0.5740 0.8525 30 1 1.5899 1.9163 0.8525 31 1 3.0829 1.3431 0.0709 32 1 1.7045 1.8723 -0.9233 33 1 1.0184 0.5081 -2.5516 34 1 1.9064 -0.7694 -4.4515 35 1 3.9106 -3.4234 -1.7843 36 1 4.2540 -3.8312 -0.0279 37 1 4.7700 -2.9272 2.5975 38 1 3.3303 -3.9733 2.6373 39 1 4.6181 -5.7882 1.5443 40 1 6.0580 -4.7428 1.5043 41 1 6.0190 -4.5929 3.9787 42 1 4.5791 -5.6384 4.0194 43 1 6.7933 -7.0758 6.5866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171508609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:39 Heat of formation + Delta-G solvation = -0.237457 kcal Electronic energy + Delta-G solvation = -26367.223924 eV Core-core repulsion = 22416.297512 eV Total energy + Delta-G solvation = -3950.926412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.51081 -41.00776 -38.94379 -37.32588 -36.85169 -35.41576 -33.43834 -32.37182 -31.48762 -30.93407 -28.07372 -27.18747 -26.81870 -24.69423 -24.44059 -23.05246 -21.68885 -20.90791 -20.59155 -19.27741 -18.96714 -17.82425 -17.51211 -16.90696 -16.66088 -16.21163 -15.77437 -15.29001 -15.23130 -15.19175 -14.49266 -14.31701 -13.98074 -13.97228 -13.52807 -13.27589 -12.74565 -12.71840 -12.33667 -12.27473 -12.15334 -11.87358 -11.83034 -11.75153 -11.52366 -11.40944 -10.88550 -10.75402 -10.63084 -10.08053 -10.00410 -9.88708 -9.81394 -9.45141 -9.15013 -8.84920 -8.83478 -8.37375 -6.02251 -4.05402 -0.62269 0.09173 0.85143 1.01786 2.32865 3.09085 3.15816 3.27234 3.32816 3.37408 3.39825 3.78430 3.89804 4.19208 4.31988 4.44426 4.62086 4.64269 4.76965 4.87421 4.95211 5.00846 5.07018 5.10056 5.33633 5.36459 5.46169 5.47073 5.58890 5.69233 5.73641 6.02439 6.12094 6.33794 6.37930 6.56437 6.65995 6.78782 6.97193 7.32202 7.57146 7.62153 7.74265 7.96159 8.25865 8.37631 9.01085 9.58976 11.08990 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.002753 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.218524 B =10167.760162 C =12147.358969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.496 5.496 3 C 0.032 3.968 4 C 0.200 3.800 5 C -0.160 4.160 6 C -0.027 4.027 7 C -0.055 4.055 8 N 0.029 4.971 9 O -0.151 6.151 10 O -0.161 6.161 11 C -0.019 4.019 12 C -0.108 4.108 13 C 0.549 3.451 14 O -0.490 6.490 15 N -0.724 5.724 16 C 0.119 3.881 17 C -0.123 4.123 18 C 0.025 3.975 19 C -0.524 4.524 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.395 0.605 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 16.964 -18.398 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.216 5.216 3 C -0.114 4.114 4 C 0.104 3.896 5 C -0.181 4.181 6 C -0.047 4.047 7 C -0.138 4.138 8 N 0.549 4.451 9 O -0.369 6.369 10 O -0.376 6.376 11 C -0.039 4.039 12 C -0.113 4.113 13 C 0.333 3.667 14 O -0.364 6.364 15 N -0.377 5.377 16 C -0.003 4.003 17 C -0.161 4.161 18 C -0.013 4.013 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.230 0.770 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.159 17.569 -16.440 27.425 hybrid contribution 0.680 -0.957 -1.413 1.837 sum -12.479 16.612 -17.852 27.393 Atomic orbital electron populations 1.22500 0.84517 1.03357 1.01222 1.59319 1.08873 1.14510 1.38942 1.22473 1.01574 0.86127 1.01185 1.19200 0.90005 0.91051 0.89351 1.21776 1.02674 1.01871 0.91775 1.21020 0.91348 0.90524 1.01781 1.20976 1.07525 0.99100 0.86211 1.43547 0.99008 1.00341 1.02192 1.94592 1.33422 1.16804 1.92036 1.94539 1.62523 1.72608 1.07940 1.21255 0.95080 0.98438 0.89134 1.20208 1.00581 0.96439 0.94042 1.17642 0.80156 0.81506 0.87420 1.90878 1.51057 1.52655 1.41815 1.46229 1.50972 1.29836 1.10654 1.21683 0.99784 0.98180 0.80629 1.21914 0.97436 0.94211 1.02503 1.19012 0.96841 0.96356 0.89046 1.21173 1.30520 1.12081 0.92419 0.92636 1.25023 0.96429 0.97403 0.95548 1.69948 1.45320 1.40755 0.97312 0.86642 0.81041 0.83230 0.76999 1.20205 1.21287 1.20208 0.90834 0.95045 0.89845 0.89844 0.90817 0.95073 0.83181 0.82502 0.82092 0.77032 0.91495 0.91496 0.92610 0.92618 0.96270 0.96271 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.33 60.07 0.56 0.78 16 2 N -0.50 -4.74 2.92 -186.63 -0.54 -5.28 16 3 C 0.03 0.24 9.38 60.06 0.56 0.80 16 4 C 0.20 1.85 4.72 -83.61 -0.39 1.45 16 5 C -0.16 -1.04 8.55 -39.42 -0.34 -1.38 16 6 C -0.03 -0.19 9.54 -39.55 -0.38 -0.57 16 7 C -0.06 -0.52 6.84 -79.99 -0.55 -1.07 16 8 N 0.03 0.33 4.45 33.94 0.15 0.49 16 9 O -0.15 -1.93 18.43 -29.46 -0.54 -2.47 16 10 O -0.16 -1.91 18.43 -29.46 -0.54 -2.45 16 11 C -0.02 -0.18 9.04 -39.20 -0.35 -0.53 16 12 C -0.11 -1.16 5.89 -104.80 -0.62 -1.78 16 13 C 0.55 7.64 7.76 -12.52 -0.10 7.54 16 14 O -0.49 -8.34 15.03 5.28 0.08 -8.26 16 15 N -0.72 -9.88 5.51 -61.38 -0.34 -10.22 16 16 C 0.12 2.00 5.67 -4.04 -0.02 1.98 16 17 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 18 C 0.03 0.63 4.97 -27.89 -0.14 0.49 16 19 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 20 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 23 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.16 7.10 -51.93 -0.37 -0.21 16 29 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.16 7.35 -51.93 -0.38 -0.22 16 33 H 0.15 0.59 7.01 -52.48 -0.37 0.22 16 34 H 0.16 0.81 7.59 -52.49 -0.40 0.41 16 35 H 0.16 1.38 5.94 -52.49 -0.31 1.07 16 36 H 0.40 4.42 6.50 -40.82 -0.27 4.16 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -33.21 369.34 -8.63 -41.84 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.86 Total: -1.64 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.31 Total: -8.06 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.00 Total: -40.97 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.01 Total: -13.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.21 -8.63 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171508609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.606 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds