Wall clock time and date at job start Tue Mar 31 2020 13:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38875 * 110.99765 * 236.04624 * 2 1 3 5 5 C 1.38962 * 120.17721 * 59.72631 * 4 2 1 6 6 C 1.37950 * 120.06662 * 179.76505 * 5 4 2 7 7 C 1.38613 * 120.42167 * 0.51388 * 6 5 4 8 8 N 1.48018 * 119.82543 * 179.72021 * 7 6 5 9 9 O 1.21794 * 120.00481 * 180.02562 * 8 7 6 10 10 O 1.21807 * 119.99986 * 0.02562 * 8 7 6 11 11 C 1.37749 * 120.35167 * 359.74137 * 7 6 5 12 12 C 1.39733 * 119.92751 * 359.97438 * 11 7 6 13 13 C 1.47432 * 120.20745 * 179.97438 * 12 11 7 14 14 O 1.21602 * 119.99865 * 180.02562 * 13 12 11 15 15 N 1.34775 * 120.00269 * 0.03066 * 13 12 11 16 16 C 1.46493 * 120.00412 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.47531 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47132 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.46922 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00208 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99974 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00261 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99942 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47457 * 59.99852 * 23 21 19 25 25 H 1.48500 * 109.47097 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47096 * 300.00117 * 23 21 19 27 27 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 28 28 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 29 29 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 30 30 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 31 31 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 32 32 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 33 33 H 1.08003 * 119.96522 * 0.02562 * 5 4 2 34 34 H 1.08001 * 119.79220 * 180.23199 * 6 5 4 35 35 H 1.08000 * 120.03589 * 180.02562 * 11 7 6 36 36 H 0.97002 * 119.99679 * 359.97438 * 15 13 12 37 37 H 1.09001 * 109.47117 * 300.00060 * 16 15 13 38 38 H 1.09007 * 109.46764 * 59.99591 * 16 15 13 39 39 H 1.08993 * 109.46771 * 300.00297 * 17 16 15 40 40 H 1.08999 * 109.46600 * 59.99788 * 17 16 15 41 41 H 1.08993 * 109.47700 * 300.00432 * 18 17 16 42 42 H 1.08998 * 109.46946 * 60.00506 * 18 17 16 43 43 H 0.96996 * 120.00376 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9666 -0.7241 -1.0755 5 6 1.6516 -0.3490 -2.3759 6 6 2.1511 -1.0671 -3.4426 7 6 2.9603 -2.1718 -3.2277 8 7 3.4840 -2.9363 -4.3819 9 8 4.1949 -3.9078 -4.1968 10 8 3.2040 -2.5940 -5.5168 11 6 3.2793 -2.5621 -1.9458 12 6 2.7862 -1.8418 -0.8546 13 6 3.1233 -2.2545 0.5200 14 8 2.6917 -1.6252 1.4668 15 7 3.9099 -3.3291 0.7273 16 6 4.2454 -3.7388 2.0932 17 6 5.1431 -4.9770 2.0485 18 6 5.4939 -5.4044 3.4750 19 6 6.3776 -6.6243 3.4308 20 1 6.6610 -7.0517 2.4803 21 6 6.8243 -7.1948 4.6039 22 7 6.4788 -6.6747 5.7613 23 14 7.9203 -8.7065 4.5492 24 1 9.1669 -8.3877 3.8079 25 1 8.2597 -9.1222 5.9338 26 1 7.2050 -9.8119 3.8623 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3633 0.4513 -0.9233 29 1 -0.3633 0.5740 0.8525 30 1 1.5899 1.9163 0.8525 31 1 3.0829 1.3431 0.0709 32 1 1.7045 1.8723 -0.9233 33 1 1.0184 0.5081 -2.5516 34 1 1.9064 -0.7694 -4.4515 35 1 3.9106 -3.4234 -1.7843 36 1 4.2540 -3.8312 -0.0279 37 1 4.7700 -2.9272 2.5975 38 1 3.3303 -3.9733 2.6373 39 1 4.6181 -5.7882 1.5443 40 1 6.0580 -4.7428 1.5043 41 1 6.0190 -4.5929 3.9787 42 1 4.5791 -5.6384 4.0194 43 1 6.7933 -7.0758 6.5866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171508609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:38 Heat of formation + Delta-G solvation = -20.363221 kcal Electronic energy + Delta-G solvation = -26368.096642 eV Core-core repulsion = 22416.297512 eV Total energy + Delta-G solvation = -3951.799131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.33667 -41.80827 -39.97887 -37.99731 -37.72173 -36.90557 -35.20773 -33.56150 -32.39399 -32.16506 -28.68762 -28.60104 -27.80266 -25.88753 -25.08639 -24.52032 -22.53706 -22.24037 -21.81295 -20.29086 -19.81480 -18.65619 -18.55001 -18.22443 -17.76065 -17.28545 -16.78927 -16.58629 -16.23640 -16.16549 -15.93590 -15.28227 -15.04239 -14.68638 -14.48419 -14.19475 -14.05467 -13.77752 -13.46736 -13.35262 -13.22337 -12.93850 -12.73843 -12.72519 -12.71632 -12.55494 -12.42109 -12.36653 -12.32459 -11.67711 -11.60373 -11.26618 -10.99848 -10.64177 -10.56778 -10.54641 -10.09113 -9.44275 -8.19524 -6.30818 -1.39638 -0.61980 0.07292 0.24071 1.41845 1.44614 1.52407 1.53730 2.01719 2.32734 2.42418 2.55246 3.13728 3.14227 3.20023 3.57392 3.63182 3.90662 3.99603 4.11172 4.21172 4.26801 4.30231 4.34963 4.45451 4.50946 4.54730 4.54824 4.76947 4.91381 4.94008 4.95098 4.96497 4.98779 5.16224 5.21140 5.38551 5.52041 5.70767 5.80601 5.84226 6.06820 6.22618 6.41172 6.48188 6.86383 7.16773 7.38727 8.92312 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.002753 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.218524 B =10167.760162 C =12147.358969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.529 5.529 3 C 0.033 3.967 4 C 0.203 3.797 5 C -0.143 4.143 6 C -0.008 4.008 7 C -0.067 4.067 8 N 0.032 4.968 9 O -0.192 6.192 10 O -0.153 6.153 11 C -0.014 4.014 12 C -0.128 4.128 13 C 0.550 3.450 14 O -0.527 6.527 15 N -0.719 5.719 16 C 0.135 3.865 17 C -0.105 4.105 18 C 0.026 3.974 19 C -0.543 4.543 20 H 0.065 0.935 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.266 1.266 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.188 0.812 34 H 0.185 0.815 35 H 0.163 0.837 36 H 0.408 0.592 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.066 0.934 41 H -0.007 1.007 42 H -0.007 1.007 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.497 17.885 -21.035 30.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.251 5.251 3 C -0.112 4.112 4 C 0.106 3.894 5 C -0.163 4.163 6 C -0.028 4.028 7 C -0.150 4.150 8 N 0.548 4.452 9 O -0.401 6.401 10 O -0.373 6.373 11 C -0.034 4.034 12 C -0.133 4.133 13 C 0.336 3.664 14 O -0.404 6.404 15 N -0.372 5.372 16 C 0.011 3.989 17 C -0.143 4.143 18 C -0.012 4.012 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.790 3.210 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.191 1.191 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.205 0.795 34 H 0.202 0.798 35 H 0.181 0.819 36 H 0.245 0.755 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.012 0.988 42 H 0.012 0.988 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.864 18.437 -19.091 29.943 hybrid contribution 0.815 -1.112 -0.602 1.504 sum -13.050 17.325 -19.693 29.296 Atomic orbital electron populations 1.22524 0.83229 1.02813 1.02931 1.59229 1.10234 1.15732 1.39857 1.22488 1.00506 0.85357 1.02872 1.19382 0.89105 0.90245 0.90627 1.22045 1.02059 1.02290 0.89920 1.21392 0.89262 0.88797 1.03300 1.21054 1.08763 0.99986 0.85183 1.43790 0.98636 1.00194 1.02591 1.94599 1.35119 1.18146 1.92230 1.94510 1.61909 1.72225 1.08666 1.21186 0.94795 0.98293 0.89109 1.19892 1.02991 0.98278 0.92141 1.18073 0.79081 0.80632 0.88590 1.90854 1.52420 1.53725 1.43357 1.46016 1.51232 1.30291 1.09662 1.21231 0.98530 0.96776 0.82324 1.21624 0.98494 0.95398 0.98759 1.18914 0.95043 0.95053 0.92189 1.21665 1.30692 1.12840 0.92923 0.91680 1.25994 0.97996 1.00797 0.95146 1.70093 1.46756 1.42526 0.98074 0.85499 0.79199 0.79190 0.77158 1.19082 1.21076 1.19095 0.92326 0.92036 0.89582 0.89570 0.92482 0.92111 0.79487 0.79802 0.81917 0.75478 0.92762 0.92782 0.91499 0.91496 0.98821 0.98835 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.33 127.69 1.19 1.57 16 2 N -0.53 -9.27 2.92 -744.36 -2.17 -11.44 16 3 C 0.03 0.42 9.38 127.69 1.20 1.62 16 4 C 0.20 3.31 4.72 38.71 0.18 3.50 16 5 C -0.14 -1.26 8.55 22.37 0.19 -1.07 16 6 C -0.01 -0.08 9.54 22.29 0.21 0.13 16 7 C -0.07 -1.11 6.84 36.35 0.25 -0.86 16 8 N 0.03 0.68 4.45 -46.52 -0.21 0.47 16 9 O -0.19 -4.87 18.43 18.89 0.35 -4.52 16 10 O -0.15 -3.31 18.43 18.88 0.35 -2.96 16 11 C -0.01 -0.24 9.04 22.52 0.20 -0.04 16 12 C -0.13 -2.64 5.89 -19.98 -0.12 -2.76 16 13 C 0.55 15.48 7.76 86.67 0.67 16.15 16 14 O -0.53 -18.45 15.03 -4.04 -0.06 -18.51 16 15 N -0.72 -19.79 5.51 -466.37 -2.57 -22.36 16 16 C 0.13 4.68 5.67 86.38 0.49 5.17 16 17 C -0.10 -4.04 5.27 30.59 0.16 -3.88 16 18 C 0.03 1.33 4.97 29.84 0.15 1.48 16 19 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 20 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 21 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 22 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 23 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.37 7.10 -2.39 -0.02 0.35 16 29 H 0.09 0.98 8.12 -2.38 -0.02 0.96 16 30 H 0.09 1.01 8.12 -2.38 -0.02 0.99 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.39 7.35 -2.39 -0.02 0.37 16 33 H 0.19 0.32 7.01 -2.91 -0.02 0.30 16 34 H 0.18 0.96 7.59 -2.91 -0.02 0.93 16 35 H 0.16 2.74 5.94 -2.91 -0.02 2.72 16 36 H 0.41 9.02 6.50 -92.71 -0.60 8.42 16 37 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -74.16 369.34 3.91 -70.24 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.44 Total: 8.68 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.48 Total: -8.87 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -4.66 Total: -90.15 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.64 Total: -25.99 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -74.16 3.91 -70.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171508609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.881 kcal (2) G-P(sol) polarization free energy of solvation -74.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds