Wall clock time and date at job start Tue Mar 31 2020 13:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35649 * 117.00031 * 2 1 4 4 C 1.38712 * 120.15144 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08532 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.39305 * 359.97438 * 5 4 3 7 7 C 1.37795 * 120.29927 * 0.02562 * 6 5 4 8 8 C 1.39706 * 119.90748 * 359.97438 * 7 6 5 9 9 C 1.47527 * 120.19204 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00224 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00212 * 0.02562 * 9 8 7 12 12 N 1.40097 * 120.00377 * 179.97438 * 11 9 8 13 13 C 1.34779 * 120.00377 * 179.97438 * 12 11 9 14 14 O 1.21586 * 120.00369 * 180.02562 * 13 12 11 15 15 N 1.34779 * 119.99603 * 0.02562 * 13 12 11 16 16 C 1.46498 * 119.99694 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46950 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47053 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46941 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99961 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99940 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99745 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47419 * 90.00286 * 23 21 19 25 25 H 1.48501 * 109.47239 * 210.00289 * 23 21 19 26 26 H 1.48500 * 109.47198 * 330.00174 * 23 21 19 27 27 H 1.09006 * 109.47348 * 300.00194 * 1 2 3 28 28 H 1.08997 * 109.47391 * 59.99699 * 1 2 3 29 29 H 1.09006 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.95424 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.80430 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.85348 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.04725 * 179.72119 * 7 6 5 34 34 H 0.97003 * 119.99516 * 0.02562 * 11 9 8 35 35 H 0.97003 * 120.00113 * 359.97438 * 12 11 9 36 36 H 0.97005 * 119.99896 * 0.02562 * 15 13 12 37 37 H 1.09000 * 109.47182 * 299.99929 * 16 15 13 38 38 H 1.09001 * 109.47225 * 60.00424 * 16 15 13 39 39 H 1.09000 * 109.47147 * 299.99984 * 17 16 15 40 40 H 1.09001 * 109.46783 * 60.00186 * 17 16 15 41 41 H 1.09000 * 109.47156 * 300.00008 * 18 17 16 42 42 H 1.09001 * 109.47149 * 60.00440 * 18 17 16 43 43 H 0.97006 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9206 3.6033 0.0000 6 6 3.3036 3.6837 -0.0005 7 6 4.0667 2.5363 -0.0011 8 6 3.4441 1.2857 -0.0005 9 6 4.2549 0.0532 -0.0017 10 8 3.7094 -1.0335 -0.0017 11 7 5.6004 0.1317 -0.0027 12 7 6.3705 -1.0386 -0.0033 13 6 7.7160 -0.9601 -0.0048 14 8 8.3843 -1.9759 -0.0058 15 7 8.3206 0.2444 -0.0054 16 6 9.7831 0.3298 -0.0065 17 6 10.2082 1.7996 -0.0075 18 6 11.7356 1.8888 -0.0081 19 6 12.1542 3.3365 -0.0097 20 1 11.4058 4.1150 -0.0099 21 6 13.4928 3.6670 -0.0100 22 7 14.4042 2.7188 -0.0092 23 14 14.0117 5.4614 -0.0113 24 1 14.1493 5.9380 1.3884 25 1 15.3140 5.5996 -0.7115 26 1 12.9845 6.2733 -0.7119 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2137 2.3194 0.0005 31 1 1.3303 4.5078 0.0008 32 1 3.7860 4.6500 -0.0005 33 1 5.1446 2.6037 -0.0060 34 1 6.0356 0.9987 -0.0024 35 1 5.9353 -1.9056 -0.0025 36 1 7.7874 1.0548 -0.0042 37 1 10.1765 -0.1620 0.8832 38 1 10.1751 -0.1620 -0.8968 39 1 9.8149 2.2909 -0.8975 40 1 9.8162 2.2917 0.8825 41 1 12.1285 1.3975 0.8821 42 1 12.1280 1.3965 -0.8979 43 1 15.3460 2.9514 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171768986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:06 Heat of formation + Delta-G solvation = -42.250778 kcal Electronic energy + Delta-G solvation = -25791.893209 eV Core-core repulsion = 21839.144963 eV Total energy + Delta-G solvation = -3952.748246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12718 -40.21738 -38.98403 -37.77069 -35.78517 -35.54270 -33.30321 -32.55895 -31.20396 -30.63833 -30.24344 -27.70567 -26.71046 -24.49534 -23.37699 -22.58853 -21.48064 -21.03205 -20.69283 -19.28849 -18.44588 -17.93434 -16.74006 -16.54323 -16.29395 -16.23707 -15.84825 -15.38612 -15.25028 -15.14079 -15.01634 -14.50635 -14.26425 -14.08867 -14.02268 -13.86954 -13.08959 -12.70796 -12.32335 -12.14483 -11.95485 -11.87191 -11.68857 -11.60202 -11.39833 -10.93310 -10.81775 -10.66277 -10.53737 -10.19325 -9.92361 -9.62696 -9.50809 -9.16393 -9.03206 -8.77269 -8.39913 -8.37241 -6.04353 -4.07714 0.34485 0.88363 1.65276 2.43992 2.77983 3.04513 3.12640 3.28709 3.35430 3.37567 3.38619 3.97062 4.20657 4.37327 4.41661 4.59429 4.69324 4.71507 4.76355 4.87526 4.95452 5.08933 5.21884 5.31485 5.55726 5.57550 5.73210 5.73394 5.91632 6.09693 6.14106 6.25302 6.34904 6.48202 6.54537 6.81543 6.88045 6.94332 7.14215 7.57520 7.60397 7.72617 7.93957 8.11654 8.34161 8.49034 8.98803 9.56536 11.06836 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002330 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.441547 B =12012.136730 C =13822.527520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.281 6.281 3 C 0.190 3.810 4 C -0.220 4.220 5 C -0.048 4.048 6 C -0.162 4.162 7 C -0.047 4.047 8 C -0.168 4.168 9 C 0.564 3.436 10 O -0.514 6.514 11 N -0.528 5.528 12 N -0.534 5.534 13 C 0.710 3.290 14 O -0.571 6.571 15 N -0.739 5.739 16 C 0.131 3.869 17 C -0.121 4.121 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.418 0.582 35 H 0.440 0.560 36 H 0.387 0.613 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.674 1.480 0.023 30.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.192 6.192 3 C 0.141 3.859 4 C -0.239 4.239 5 C -0.067 4.067 6 C -0.181 4.181 7 C -0.066 4.066 8 C -0.173 4.173 9 C 0.352 3.648 10 O -0.389 6.389 11 N -0.281 5.281 12 N -0.292 5.292 13 C 0.409 3.591 14 O -0.444 6.444 15 N -0.395 5.395 16 C 0.009 3.991 17 C -0.159 4.159 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.531 5.531 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.260 0.740 35 H 0.286 0.714 36 H 0.221 0.779 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -30.126 -0.210 0.016 30.127 hybrid contribution -0.098 1.738 0.012 1.741 sum -30.224 1.528 0.028 30.263 Atomic orbital electron populations 1.23196 0.78421 1.04552 1.01294 1.86373 1.21032 1.25324 1.86443 1.18983 0.90658 0.85107 0.91167 1.21279 1.00513 0.91948 1.10135 1.21202 0.94813 0.97221 0.93420 1.21057 0.93820 0.98753 1.04432 1.21208 0.99997 0.90814 0.94532 1.18971 0.90604 0.92916 1.14786 1.17997 0.79840 0.89652 0.77358 1.90862 1.70749 1.28393 1.48847 1.44757 1.03861 1.01796 1.77652 1.44619 1.01318 1.01309 1.81928 1.15805 0.79800 0.85105 0.78411 1.91034 1.60291 1.34499 1.58603 1.45439 1.09281 1.05586 1.79172 1.21636 0.75496 0.99597 1.02401 1.21914 1.01446 0.91685 1.00877 1.19030 0.87278 0.97286 0.97801 1.21179 0.91719 0.92127 1.51096 0.92648 1.25037 0.96846 0.97349 0.95278 1.69967 1.00736 1.32039 1.50399 0.86577 0.78016 0.85197 0.78082 1.20667 1.21216 1.19916 0.92444 0.92452 0.87804 0.84568 0.85010 0.84666 0.84862 0.73971 0.71373 0.77902 0.91467 0.91467 0.92656 0.92668 0.96166 0.96159 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.28 -2.89 8.57 -40.53 -0.35 -3.24 16 3 C 0.19 1.76 6.70 -38.69 -0.26 1.50 16 4 C -0.22 -1.41 9.03 -39.47 -0.36 -1.77 16 5 C -0.05 -0.26 10.03 -39.54 -0.40 -0.65 16 6 C -0.16 -0.93 10.02 -39.63 -0.40 -1.32 16 7 C -0.05 -0.32 9.54 -39.20 -0.37 -0.69 16 8 C -0.17 -1.59 5.89 -104.85 -0.62 -2.21 16 9 C 0.56 6.63 7.88 -12.47 -0.10 6.53 16 10 O -0.51 -7.76 15.00 -16.60 -0.25 -8.01 16 11 N -0.53 -5.46 6.21 30.46 0.19 -5.27 16 12 N -0.53 -6.86 6.26 27.64 0.17 -6.69 16 13 C 0.71 10.93 8.68 -86.91 -0.75 10.17 16 14 O -0.57 -11.12 17.18 5.29 0.09 -11.03 16 15 N -0.74 -10.19 5.52 -65.22 -0.36 -10.55 16 16 C 0.13 2.22 5.67 -4.04 -0.02 2.20 16 17 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 18 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 19 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 20 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 23 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 27 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 28 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.14 0.56 6.30 -52.49 -0.33 0.23 16 31 H 0.13 0.37 8.06 -52.48 -0.42 -0.05 16 32 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.13 0.58 6.40 -52.49 -0.34 0.25 16 34 H 0.42 3.17 4.73 -182.60 -0.86 2.31 16 35 H 0.44 5.79 8.10 -182.60 -1.48 4.31 16 36 H 0.39 4.05 6.39 -40.82 -0.26 3.79 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -36.20 367.35 -9.64 -45.83 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.41 Total: 3.11 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.97 Total: -0.08 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.74 Total: -48.15 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.51 Total: -22.28 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.20 -9.64 -45.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171768986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.584 kcal (2) G-P(sol) polarization free energy of solvation -36.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds