Wall clock time and date at job start Tue Mar 31 2020 13:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35649 * 117.00031 * 2 1 4 4 C 1.38712 * 120.15144 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08532 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.39305 * 359.97438 * 5 4 3 7 7 C 1.37795 * 120.29927 * 0.02562 * 6 5 4 8 8 C 1.39706 * 119.90748 * 359.97438 * 7 6 5 9 9 C 1.47527 * 120.19204 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00224 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00212 * 0.02562 * 9 8 7 12 12 N 1.40097 * 120.00377 * 179.97438 * 11 9 8 13 13 C 1.34779 * 120.00377 * 179.97438 * 12 11 9 14 14 O 1.21586 * 120.00369 * 180.02562 * 13 12 11 15 15 N 1.34779 * 119.99603 * 0.02562 * 13 12 11 16 16 C 1.46498 * 119.99694 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46950 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47053 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46941 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99961 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99940 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99745 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47419 * 90.00286 * 23 21 19 25 25 H 1.48501 * 109.47239 * 210.00289 * 23 21 19 26 26 H 1.48500 * 109.47198 * 330.00174 * 23 21 19 27 27 H 1.09006 * 109.47348 * 300.00194 * 1 2 3 28 28 H 1.08997 * 109.47391 * 59.99699 * 1 2 3 29 29 H 1.09006 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.95424 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.80430 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.85348 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.04725 * 179.72119 * 7 6 5 34 34 H 0.97003 * 119.99516 * 0.02562 * 11 9 8 35 35 H 0.97003 * 120.00113 * 359.97438 * 12 11 9 36 36 H 0.97005 * 119.99896 * 0.02562 * 15 13 12 37 37 H 1.09000 * 109.47182 * 299.99929 * 16 15 13 38 38 H 1.09001 * 109.47225 * 60.00424 * 16 15 13 39 39 H 1.09000 * 109.47147 * 299.99984 * 17 16 15 40 40 H 1.09001 * 109.46783 * 60.00186 * 17 16 15 41 41 H 1.09000 * 109.47156 * 300.00008 * 18 17 16 42 42 H 1.09001 * 109.47149 * 60.00440 * 18 17 16 43 43 H 0.97006 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9206 3.6033 0.0000 6 6 3.3036 3.6837 -0.0005 7 6 4.0667 2.5363 -0.0011 8 6 3.4441 1.2857 -0.0005 9 6 4.2549 0.0532 -0.0017 10 8 3.7094 -1.0335 -0.0017 11 7 5.6004 0.1317 -0.0027 12 7 6.3705 -1.0386 -0.0033 13 6 7.7160 -0.9601 -0.0048 14 8 8.3843 -1.9759 -0.0058 15 7 8.3206 0.2444 -0.0054 16 6 9.7831 0.3298 -0.0065 17 6 10.2082 1.7996 -0.0075 18 6 11.7356 1.8888 -0.0081 19 6 12.1542 3.3365 -0.0097 20 1 11.4058 4.1150 -0.0099 21 6 13.4928 3.6670 -0.0100 22 7 14.4042 2.7188 -0.0092 23 14 14.0117 5.4614 -0.0113 24 1 14.1493 5.9380 1.3884 25 1 15.3140 5.5996 -0.7115 26 1 12.9845 6.2733 -0.7119 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2137 2.3194 0.0005 31 1 1.3303 4.5078 0.0008 32 1 3.7860 4.6500 -0.0005 33 1 5.1446 2.6037 -0.0060 34 1 6.0356 0.9987 -0.0024 35 1 5.9353 -1.9056 -0.0025 36 1 7.7874 1.0548 -0.0042 37 1 10.1765 -0.1620 0.8832 38 1 10.1751 -0.1620 -0.8968 39 1 9.8149 2.2909 -0.8975 40 1 9.8162 2.2917 0.8825 41 1 12.1285 1.3975 0.8821 42 1 12.1280 1.3965 -0.8979 43 1 15.3460 2.9514 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171768986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:05 Heat of formation + Delta-G solvation = -67.821217 kcal Electronic energy + Delta-G solvation = -25793.002026 eV Core-core repulsion = 21839.144963 eV Total energy + Delta-G solvation = -3953.857064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93223 -41.18209 -39.93098 -38.30419 -37.05876 -36.87730 -35.14983 -33.38555 -32.81974 -31.18951 -31.06854 -28.51512 -28.12752 -25.23724 -25.04904 -23.11112 -22.52370 -22.24965 -22.03825 -20.34585 -19.23405 -18.77337 -18.41189 -17.48636 -17.16058 -17.15360 -16.78085 -16.59911 -16.30354 -16.08509 -16.00882 -15.68966 -15.47646 -15.42321 -14.76335 -14.48087 -14.24709 -13.72004 -13.66841 -13.52472 -13.10702 -12.75715 -12.60130 -12.54926 -12.52186 -12.35458 -12.15233 -12.04125 -11.95164 -11.64381 -11.40458 -11.17699 -11.12907 -10.51632 -10.34892 -10.13712 -9.49416 -9.21669 -8.15823 -6.26790 -0.21516 0.40549 0.66690 1.45031 1.46076 1.56774 1.62500 1.87704 1.95933 2.31453 2.45270 2.80947 3.18451 3.24624 3.77554 3.82747 3.96702 4.13840 4.24322 4.26158 4.35395 4.38441 4.39958 4.48375 4.58086 4.72867 4.79051 4.92614 4.98772 5.09195 5.18496 5.28338 5.33528 5.33692 5.48103 5.50330 5.57706 5.74336 5.75668 5.88625 6.17372 6.25942 6.40190 6.56117 6.91272 7.12085 7.30575 7.42721 8.96174 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002330 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.441547 B =12012.136730 C =13822.527520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.318 6.318 3 C 0.167 3.833 4 C -0.222 4.222 5 C -0.041 4.041 6 C -0.164 4.164 7 C -0.047 4.047 8 C -0.195 4.195 9 C 0.563 3.437 10 O -0.556 6.556 11 N -0.515 5.515 12 N -0.528 5.528 13 C 0.712 3.288 14 O -0.615 6.615 15 N -0.722 5.722 16 C 0.145 3.855 17 C -0.102 4.102 18 C 0.022 3.978 19 C -0.537 4.537 20 H 0.070 0.930 21 C -0.006 4.006 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.258 1.258 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.432 0.568 35 H 0.440 0.560 36 H 0.407 0.593 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.073 0.927 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.732 5.003 0.021 33.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.229 6.229 3 C 0.119 3.881 4 C -0.240 4.240 5 C -0.060 4.060 6 C -0.182 4.182 7 C -0.066 4.066 8 C -0.200 4.200 9 C 0.353 3.647 10 O -0.433 6.433 11 N -0.270 5.270 12 N -0.283 5.283 13 C 0.411 3.589 14 O -0.492 6.492 15 N -0.380 5.380 16 C 0.021 3.979 17 C -0.139 4.139 18 C -0.016 4.016 19 C -0.575 4.575 20 H 0.088 0.912 21 C -0.203 4.203 22 N -0.576 5.576 23 Si 0.791 3.209 24 H -0.200 1.200 25 H -0.214 1.214 26 H -0.182 1.182 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.175 0.825 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.172 0.828 34 H 0.277 0.723 35 H 0.285 0.715 36 H 0.244 0.756 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -32.237 3.377 0.014 32.413 hybrid contribution 0.436 0.668 0.014 0.798 sum -31.801 4.045 0.028 32.057 Atomic orbital electron populations 1.23425 0.76551 1.05403 1.02755 1.86317 1.23254 1.26581 1.86796 1.19336 0.90965 0.85737 0.92052 1.21557 1.01552 0.91386 1.09517 1.21648 0.95149 0.97853 0.91301 1.21436 0.94138 0.99311 1.03282 1.21490 1.01283 0.90063 0.93765 1.19004 0.90750 0.92677 1.17571 1.18515 0.79877 0.90111 0.76183 1.90834 1.71482 1.30089 1.50880 1.44753 1.03487 1.01314 1.77429 1.44390 1.00752 1.02423 1.80771 1.15776 0.80239 0.84713 0.78173 1.91006 1.61663 1.36055 1.60484 1.45023 1.08154 1.06082 1.78720 1.21256 0.77071 0.98407 1.01215 1.21619 0.96955 0.92773 1.02598 1.18954 0.91571 0.95895 0.95172 1.21687 0.92236 0.93458 1.50082 0.91170 1.26035 0.97141 1.02178 0.94990 1.70122 1.01066 1.34580 1.51869 0.85424 0.77640 0.79467 0.78358 1.19952 1.21441 1.18159 0.90915 0.90926 0.87435 0.82488 0.81953 0.82202 0.82753 0.72318 0.71473 0.75587 0.92825 0.92830 0.90841 0.90836 0.98925 0.98917 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -6.62 8.57 -68.72 -0.59 -7.21 16 3 C 0.17 2.98 6.70 22.85 0.15 3.13 16 4 C -0.22 -2.33 9.03 22.34 0.20 -2.12 16 5 C -0.04 -0.29 10.03 22.30 0.22 -0.07 16 6 C -0.16 -1.27 10.02 22.24 0.22 -1.05 16 7 C -0.05 -0.52 9.54 22.52 0.21 -0.31 16 8 C -0.19 -3.53 5.89 -20.01 -0.12 -3.64 16 9 C 0.56 13.21 7.88 86.69 0.68 13.89 16 10 O -0.56 -17.37 15.00 16.90 0.25 -17.12 16 11 N -0.52 -10.18 6.21 -175.81 -1.09 -11.27 16 12 N -0.53 -13.48 6.26 -184.74 -1.16 -14.64 16 13 C 0.71 21.74 8.68 179.05 1.55 23.29 16 14 O -0.62 -24.45 17.18 -3.99 -0.07 -24.52 16 15 N -0.72 -18.97 5.52 -478.53 -2.64 -21.61 16 16 C 0.14 4.82 5.67 86.38 0.49 5.31 16 17 C -0.10 -3.58 5.27 30.60 0.16 -3.42 16 18 C 0.02 1.09 4.97 29.85 0.15 1.24 16 19 C -0.54 -28.72 9.11 25.60 0.23 -28.48 16 20 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 21 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 22 N -0.94 -56.28 13.29 21.45 0.28 -55.99 16 23 Si 0.97 42.58 29.54 68.60 2.03 44.61 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 27 H 0.07 0.48 7.66 -2.38 -0.02 0.46 16 28 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 29 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.16 0.85 6.30 -2.91 -0.02 0.83 16 31 H 0.16 0.14 8.06 -2.91 -0.02 0.11 16 32 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.15 0.84 6.40 -2.91 -0.02 0.82 16 34 H 0.43 5.64 4.73 -213.32 -1.01 4.63 16 35 H 0.44 11.85 8.10 -213.32 -1.73 10.12 16 36 H 0.41 7.42 6.39 -92.70 -0.59 6.83 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 43 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -81.17 367.35 0.50 -80.67 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -2.26 Total: 17.94 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.74 Total: 9.14 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -4.60 Total: -103.51 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.40 Total: -48.85 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -81.17 0.50 -80.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171768986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.851 kcal (2) G-P(sol) polarization free energy of solvation -81.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds