Wall clock time and date at job start Tue Mar 31 2020 13:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46910 * 110.99702 * 2 1 4 4 C 1.50706 * 109.46960 * 293.95134 * 3 2 1 5 5 O 1.21278 * 119.99852 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99901 * 179.97438 * 4 3 2 7 7 C 1.46491 * 119.99893 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46971 * 180.02562 * 7 6 4 9 9 C 1.53010 * 109.47077 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46743 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00557 * 359.97438 * 10 9 8 12 12 C 1.37886 * 119.99350 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00084 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99543 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47222 * 89.99932 * 14 12 10 16 16 H 1.48504 * 109.47240 * 209.99480 * 14 12 10 17 17 H 1.48503 * 109.47335 * 329.99545 * 14 12 10 18 18 C 1.39676 * 111.00267 * 123.94911 * 2 1 3 19 19 C 1.38930 * 120.07263 * 296.03023 * 18 2 1 20 20 C 1.38089 * 119.92063 * 180.02562 * 19 18 2 21 21 C 1.38306 * 120.07673 * 359.72243 * 20 19 18 22 22 C 1.38265 * 120.14784 * 0.55309 * 21 20 19 23 23 C 1.38133 * 120.07407 * 359.44555 * 22 21 20 24 24 N 1.48004 * 120.03704 * 180.29695 * 23 22 21 25 25 O 1.21803 * 119.99981 * 0.02562 * 24 23 22 26 26 O 1.21799 * 119.99889 * 180.02562 * 24 23 22 27 27 H 1.08999 * 109.47578 * 296.04333 * 1 2 3 28 28 H 1.08997 * 109.47340 * 56.05047 * 1 2 3 29 29 H 1.09006 * 109.46874 * 176.04798 * 1 2 3 30 30 H 1.08997 * 109.46828 * 53.95164 * 3 2 1 31 31 H 1.08996 * 109.46943 * 173.95396 * 3 2 1 32 32 H 0.97002 * 119.99666 * 0.02562 * 6 4 3 33 33 H 1.08996 * 109.47313 * 300.00231 * 7 6 4 34 34 H 1.08998 * 109.47609 * 60.00129 * 7 6 4 35 35 H 1.09003 * 109.47342 * 299.99850 * 8 7 6 36 36 H 1.08996 * 109.47059 * 60.00123 * 8 7 6 37 37 H 1.09003 * 109.46780 * 300.00032 * 9 8 7 38 38 H 1.08996 * 109.47207 * 60.00053 * 9 8 7 39 39 H 0.97004 * 120.00067 * 180.02562 * 13 12 10 40 40 H 1.07998 * 120.04182 * 359.97438 * 19 18 2 41 41 H 1.07994 * 119.96009 * 179.97438 * 20 19 18 42 42 H 1.08001 * 119.92834 * 180.28197 * 21 20 19 43 43 H 1.08002 * 119.96572 * 179.72711 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 8 1.0047 1.4456 -2.1407 6 7 2.0179 3.3203 -1.5234 7 6 1.6689 3.9772 -2.7854 8 6 2.2172 5.4056 -2.7854 9 6 1.8521 6.0920 -4.1033 10 6 2.3928 7.4986 -4.1036 11 1 2.9415 7.8665 -3.2492 12 6 2.1860 8.3164 -5.1943 13 7 1.5175 7.8686 -6.2345 14 14 2.8555 10.0603 -5.1944 15 1 4.2268 10.0640 -5.7644 16 1 1.9753 10.9285 -6.0170 17 1 2.8968 10.5747 -3.8019 18 6 1.9696 -0.7282 1.0817 19 6 1.7265 -0.3006 2.3810 20 6 2.2234 -1.0226 3.4481 21 6 2.9574 -2.1734 3.2246 22 6 3.2059 -2.5986 1.9327 23 6 2.7118 -1.8811 0.8607 24 7 2.9728 -2.3407 -0.5218 25 8 3.6231 -3.3523 -0.7148 26 8 2.5372 -1.7072 -1.4665 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 1.5610 1.9274 0.8309 31 1 3.0796 1.3445 0.1082 32 1 2.5232 3.8015 -0.8496 33 1 2.1032 3.4216 -3.6165 34 1 0.5846 4.0039 -2.8935 35 1 1.7832 5.9615 -1.9543 36 1 3.3015 5.3785 -2.6776 37 1 2.2858 5.5362 -4.9347 38 1 0.7678 6.1191 -4.2107 39 1 1.3723 8.4438 -7.0020 40 1 1.1504 0.5959 2.5563 41 1 2.0352 -0.6906 4.4583 42 1 3.3410 -2.7388 4.0611 43 1 3.7831 -3.4952 1.7615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173069123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:39 Heat of formation + Delta-G solvation = 2.013808 kcal Electronic energy + Delta-G solvation = -26257.218013 eV Core-core repulsion = 22306.389223 eV Total energy + Delta-G solvation = -3950.828790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19928 -40.59022 -39.38190 -37.10827 -36.24858 -35.29251 -33.32342 -32.42585 -31.41817 -30.78905 -28.78060 -26.84347 -26.46436 -25.33380 -23.25241 -22.72104 -21.86570 -20.74203 -19.89506 -19.40765 -18.50425 -17.58868 -17.44661 -16.86267 -16.40191 -16.17957 -15.83899 -15.66599 -15.31042 -14.93289 -14.69355 -14.44013 -14.31113 -13.71620 -13.37749 -13.24912 -12.90890 -12.46223 -12.28045 -12.16760 -12.05002 -11.83283 -11.52938 -11.43031 -11.11427 -10.95297 -10.90359 -10.73677 -10.60349 -10.10926 -9.88398 -9.86617 -9.71499 -9.39024 -9.12916 -8.90414 -8.73650 -8.37525 -6.01992 -4.05216 -0.39958 0.31030 1.19314 1.36282 2.71032 2.75220 2.85794 3.30419 3.36793 3.39079 3.53418 3.91915 4.09568 4.26893 4.34572 4.42805 4.43838 4.70673 4.73581 4.89252 4.93740 5.03943 5.17001 5.24674 5.33704 5.35751 5.47874 5.70643 5.73665 5.78152 5.82982 6.16354 6.25915 6.33314 6.48358 6.59678 6.65629 6.83179 6.99888 7.63331 7.68983 7.72795 7.76087 7.96703 8.36531 8.41100 9.01459 9.58905 11.09244 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.002081 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.491915 B =13449.197936 C =13866.506784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.482 5.482 3 C 0.041 3.959 4 C 0.509 3.491 5 O -0.513 6.513 6 N -0.728 5.728 7 C 0.119 3.881 8 C -0.120 4.120 9 C 0.023 3.977 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.158 3.842 19 C -0.154 4.154 20 C -0.061 4.061 21 C -0.123 4.123 22 C -0.054 4.054 23 C -0.025 4.025 24 N 0.020 4.980 25 O -0.203 6.203 26 O -0.080 6.080 27 H 0.029 0.971 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.396 0.604 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -19.925 25.051 32.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.203 5.203 3 C -0.088 4.088 4 C 0.293 3.707 5 O -0.387 6.387 6 N -0.380 5.380 7 C -0.004 4.004 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.062 3.938 19 C -0.174 4.174 20 C -0.080 4.080 21 C -0.141 4.141 22 C -0.073 4.073 23 C -0.109 4.109 24 N 0.543 4.457 25 O -0.405 6.405 26 O -0.314 6.314 27 H 0.047 0.953 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.579 -20.421 24.496 31.897 hybrid contribution 0.476 1.510 0.687 1.726 sum 1.055 -18.911 25.183 31.510 Atomic orbital electron populations 1.22661 0.83355 1.03599 1.02303 1.59321 1.10180 1.12876 1.37903 1.22069 1.02040 0.87857 0.96881 1.20092 0.80398 0.81820 0.88356 1.90718 1.38650 1.63582 1.45784 1.46163 1.57622 1.13231 1.20968 1.21639 1.00418 0.94123 0.84212 1.21886 0.99877 0.92008 1.02061 1.19033 0.97156 0.94806 0.90424 1.21196 1.35146 0.97751 1.02021 0.92692 1.25035 0.95265 0.98567 0.95630 1.69962 1.40578 1.36554 1.06085 0.86584 0.78857 0.84525 0.77946 1.20644 1.21208 1.19943 1.18671 0.92994 0.91668 0.90432 1.21862 1.01963 1.01969 0.91622 1.21505 0.93321 0.93307 0.99821 1.21249 0.99536 0.97274 0.96064 1.21098 0.96168 0.99202 0.90833 1.21253 1.07521 0.99199 0.82927 1.43448 0.99202 1.00075 1.02980 1.94517 1.39430 1.15200 1.91320 1.94735 1.49611 1.54042 1.32979 0.95298 0.87590 0.91172 0.91258 0.87962 0.77030 0.91583 0.91761 0.92836 0.92750 0.96208 0.96272 0.92903 0.83822 0.84001 0.83550 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.02 60.06 0.54 0.81 16 2 N -0.48 -5.30 2.35 -180.32 -0.42 -5.73 16 3 C 0.04 0.40 5.03 -4.97 -0.02 0.38 16 4 C 0.51 7.05 7.52 -10.98 -0.08 6.97 16 5 O -0.51 -9.23 14.33 5.56 0.08 -9.15 16 6 N -0.73 -9.74 5.56 -60.30 -0.33 -10.08 16 7 C 0.12 2.03 5.67 -4.05 -0.02 2.01 16 8 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.16 1.43 4.67 -83.79 -0.39 1.04 16 19 C -0.15 -0.86 8.66 -39.38 -0.34 -1.20 16 20 C -0.06 -0.23 10.04 -39.61 -0.40 -0.62 16 21 C -0.12 -0.50 10.04 -39.55 -0.40 -0.89 16 22 C -0.05 -0.37 9.55 -39.61 -0.38 -0.75 16 23 C -0.02 -0.25 6.87 -79.75 -0.55 -0.80 16 24 N 0.02 0.28 4.45 34.06 0.15 0.44 16 25 O -0.20 -2.92 18.45 -29.46 -0.54 -3.46 16 26 O -0.08 -1.30 17.10 -29.46 -0.50 -1.81 16 27 H 0.03 0.22 7.34 -51.93 -0.38 -0.16 16 28 H 0.11 1.33 5.82 -51.93 -0.30 1.03 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.47 7.47 -51.93 -0.39 0.08 16 31 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 32 H 0.40 4.09 8.47 -40.82 -0.35 3.74 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.14 0.57 7.14 -52.49 -0.37 0.19 16 41 H 0.14 0.13 8.06 -52.49 -0.42 -0.30 16 42 H 0.15 0.17 8.06 -52.49 -0.42 -0.25 16 43 H 0.15 0.91 7.61 -52.49 -0.40 0.51 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -35.31 369.35 -8.98 -44.29 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.96 Total: -2.05 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.73 Total: -8.37 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.13 Total: -41.41 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.97 Total: -14.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.31 -8.98 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173069123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.306 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds