Wall clock time and date at job start Tue Mar 31 2020 12:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21296 * 120.00287 * 2 1 4 4 C 1.46788 * 119.99757 * 179.97438 * 2 1 3 5 5 C 1.40040 * 120.21000 * 0.02562 * 4 2 1 6 6 C 1.37871 * 119.84996 * 179.97438 * 5 4 2 7 7 F 1.35096 * 119.85342 * 180.02562 * 6 5 4 8 8 C 1.38812 * 120.28829 * 0.02562 * 6 5 4 9 9 C 1.38039 * 120.43284 * 359.97438 * 8 6 5 10 10 C 1.50700 * 119.93231 * 180.02562 * 9 8 6 11 11 N 1.46899 * 109.47261 * 265.00641 * 10 9 8 12 12 C 1.46908 * 110.99802 * 288.69071 * 11 10 9 13 13 C 1.50704 * 109.46773 * 172.02247 * 12 11 10 14 14 H 1.07997 * 120.00470 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99435 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99833 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46960 * 60.00208 * 17 15 13 19 19 H 1.48500 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47152 * 300.00441 * 17 15 13 21 21 C 1.46900 * 111.00246 * 164.74112 * 11 10 9 22 22 C 1.53000 * 109.46868 * 293.48731 * 21 11 10 23 23 C 1.53006 * 117.49778 * 117.12550 * 22 21 11 24 24 C 1.53001 * 117.49843 * 185.78237 * 22 21 11 25 25 C 1.38676 * 120.13874 * 0.28435 * 9 8 6 26 26 O 1.35644 * 120.14674 * 179.72364 * 25 9 8 27 27 H 1.08993 * 109.47093 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47168 * 300.00599 * 1 2 3 29 29 H 1.08998 * 109.46772 * 60.00119 * 1 2 3 30 30 H 1.07996 * 120.07527 * 0.02562 * 5 4 2 31 31 H 1.08007 * 119.78104 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47554 * 145.00538 * 10 9 8 33 33 H 1.08999 * 109.46929 * 25.00199 * 10 9 8 34 34 H 1.08998 * 109.46909 * 292.02318 * 12 11 10 35 35 H 1.09002 * 109.47004 * 52.02386 * 12 11 10 36 36 H 0.96998 * 119.99829 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.47361 * 173.48905 * 21 11 10 38 38 H 1.08994 * 109.47473 * 53.48752 * 21 11 10 39 39 H 1.09003 * 115.55073 * 331.45585 * 22 21 11 40 40 H 1.09001 * 117.49761 * 215.00600 * 23 22 21 41 41 H 1.09002 * 117.49645 * 0.02562 * 23 22 21 42 42 H 1.08992 * 117.50176 * 359.97438 * 24 22 21 43 43 H 1.09005 * 117.49364 * 145.00307 * 24 22 21 44 44 H 0.96699 * 114.00286 * 89.99133 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2410 -1.2713 0.0006 5 6 1.5452 -2.4866 0.0006 6 6 2.2420 -3.6762 0.0006 7 9 1.5708 -4.8487 0.0001 8 6 3.6301 -3.6746 0.0011 9 6 4.3278 -2.4835 0.0011 10 6 5.8348 -2.4948 0.0011 11 7 6.3254 -2.3780 1.3808 12 6 6.0967 -1.0260 1.9081 13 6 6.4294 -0.9971 3.3777 14 1 6.7764 -1.8932 3.8706 15 6 6.2917 0.1737 4.0927 16 7 5.8695 1.2651 3.4924 17 14 6.7033 0.2095 5.9145 18 1 8.1278 -0.1633 6.1074 19 1 6.4722 1.5761 6.4474 20 1 5.8368 -0.7561 6.6368 21 6 7.7456 -2.7434 1.4674 22 6 7.9085 -4.2331 1.1587 23 6 8.7328 -4.6133 -0.0730 24 6 9.3019 -4.8416 1.3296 25 6 3.6450 -1.2765 0.0065 26 8 4.3305 -0.1060 0.0122 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.4652 -2.4919 -0.0003 31 1 4.1677 -4.6113 0.0007 32 1 6.2045 -1.6558 -0.5882 33 1 6.1911 -3.4289 -0.4332 34 1 6.7321 -0.3169 1.3777 35 1 5.0509 -0.7531 1.7669 36 1 5.7723 2.0887 3.9955 37 1 8.1129 -2.5384 2.4729 38 1 8.3159 -2.1584 0.7459 39 1 7.0517 -4.8606 1.4043 40 1 8.4181 -5.4909 -0.6378 41 1 9.1592 -3.8022 -0.6631 42 1 10.1025 -4.1807 1.6614 43 1 9.3616 -5.8695 1.6874 44 1 4.5297 0.2374 -0.8695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175708493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:34 Heat of formation + Delta-G solvation = -60.772168 kcal Electronic energy + Delta-G solvation = -27748.783551 eV Core-core repulsion = 23775.312196 eV Total energy + Delta-G solvation = -3973.471356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.80605 -40.29866 -38.48297 -37.56441 -36.24782 -35.35402 -32.73806 -31.96555 -29.92447 -29.03562 -27.38583 -26.60962 -24.16397 -23.71667 -22.19230 -21.67888 -20.84368 -19.90563 -19.17854 -18.18198 -17.13820 -16.93118 -16.33232 -15.71702 -15.37391 -15.26333 -15.18599 -14.78247 -14.70590 -14.47953 -14.10349 -14.03332 -13.71221 -13.47870 -13.09206 -12.70327 -12.29141 -12.12687 -11.99388 -11.80702 -11.71197 -11.53165 -11.45893 -11.30113 -11.16870 -10.84058 -10.66255 -10.52064 -10.38114 -10.09088 -9.62685 -9.54015 -9.37931 -9.05686 -8.87113 -8.31182 -8.28298 -7.23997 -5.88565 -3.90829 0.66457 1.20462 2.50393 3.38299 3.42825 3.45247 3.58628 4.03775 4.07825 4.32571 4.39200 4.50834 4.66966 4.84417 4.90084 5.12938 5.17163 5.21502 5.25190 5.36366 5.39687 5.45128 5.51208 5.64756 5.75330 5.78496 5.80725 5.87176 5.94903 5.99244 6.08779 6.12747 6.20957 6.28856 6.30281 6.50181 6.55782 6.79649 6.81351 7.46093 7.51587 7.71149 7.88074 8.03529 8.27647 8.28305 8.63664 9.16411 9.71333 11.20365 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.005687 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.561563 B = 4922.031847 C = 7153.724425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.390 3.610 3 O -0.430 6.430 4 C -0.181 4.181 5 C -0.104 4.104 6 C 0.068 3.932 7 F -0.142 7.142 8 C -0.091 4.091 9 C -0.075 4.075 10 C 0.096 3.904 11 N -0.529 5.529 12 C 0.192 3.808 13 C -0.515 4.515 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.885 5.885 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.093 3.907 22 C -0.137 4.137 23 C -0.192 4.192 24 C -0.182 4.182 25 C 0.183 3.817 26 O -0.446 6.446 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.038 0.962 33 H 0.075 0.925 34 H -0.011 1.011 35 H 0.058 0.942 36 H 0.259 0.741 37 H 0.092 0.908 38 H 0.021 0.979 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 -9.422 -11.832 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.266 3.734 3 O -0.303 6.303 4 C -0.182 4.182 5 C -0.124 4.124 6 C 0.049 3.951 7 F -0.121 7.121 8 C -0.111 4.111 9 C -0.076 4.076 10 C -0.032 4.032 11 N -0.253 5.253 12 C 0.068 3.932 13 C -0.553 4.553 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.524 5.524 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.035 4.035 22 C -0.155 4.155 23 C -0.229 4.229 24 C -0.220 4.220 25 C 0.135 3.865 26 O -0.256 6.256 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.007 0.993 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.039 0.961 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.095 -9.049 -10.898 15.421 hybrid contribution 0.498 0.343 0.206 0.639 sum -5.597 -8.706 -10.692 14.881 Atomic orbital electron populations 1.22227 0.94162 1.04428 1.04808 1.22130 0.91282 0.87438 0.72532 1.90637 1.71673 1.33621 1.34392 1.20742 0.93851 0.94951 1.08700 1.21223 1.00534 0.90115 1.00492 1.17404 0.90123 0.81085 1.06511 1.91484 1.80419 1.45777 1.94378 1.21065 0.91776 0.99287 0.98935 1.20122 0.97282 0.91237 0.99000 1.20871 0.88672 1.00757 0.92902 1.62215 1.15776 1.32177 1.15145 1.19941 0.98436 0.80762 0.94106 1.21143 1.44506 0.95513 0.94165 0.92253 1.24962 0.95641 0.95725 0.98059 1.69996 1.46165 1.00371 1.35878 0.86696 0.78759 0.76884 0.85836 1.20395 1.21434 1.20336 1.21590 0.89435 0.90469 1.02010 1.22496 0.94327 0.98193 1.00534 1.23052 1.05731 1.02999 0.91119 1.22904 0.97813 1.01553 0.99706 1.18610 0.88294 0.86517 0.93036 1.85209 1.74357 1.34681 1.31391 0.90121 0.88805 0.89035 0.83848 0.84238 0.94419 0.90631 0.99322 0.92388 0.93094 0.88978 0.96050 0.87466 0.89504 0.89300 0.89013 0.89298 0.76160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 10.19 36.01 0.37 -1.63 16 2 C 0.39 5.87 7.22 -30.85 -0.22 5.65 16 3 O -0.43 -8.21 15.91 -16.38 -0.26 -8.47 16 4 C -0.18 -2.77 5.88 -104.95 -0.62 -3.39 16 5 C -0.10 -1.34 9.42 -39.04 -0.37 -1.71 16 6 C 0.07 0.93 7.28 -39.50 -0.29 0.64 16 7 F -0.14 -1.88 17.26 2.25 0.04 -1.84 16 8 C -0.09 -1.31 9.63 -39.44 -0.38 -1.69 16 9 C -0.08 -1.23 5.17 -104.53 -0.54 -1.77 16 10 C 0.10 1.62 4.84 -4.98 -0.02 1.60 16 11 N -0.53 -10.98 4.46 -237.51 -1.06 -12.04 16 12 C 0.19 4.97 3.77 -4.97 -0.02 4.95 16 13 C -0.51 -14.66 8.35 -34.44 -0.29 -14.95 16 14 H 0.06 1.67 7.04 -52.49 -0.37 1.30 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.09 1.75 5.08 -3.82 -0.02 1.73 16 22 C -0.14 -2.05 4.68 -90.62 -0.42 -2.48 16 23 C -0.19 -2.38 10.06 -26.69 -0.27 -2.65 16 24 C -0.18 -2.36 10.25 -26.69 -0.27 -2.63 16 25 C 0.18 3.18 5.65 -38.60 -0.22 2.96 16 26 O -0.45 -8.63 8.16 -40.56 -0.33 -8.96 16 27 H 0.08 0.62 5.60 -51.93 -0.29 0.33 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.14 1.37 5.92 -52.49 -0.31 1.06 16 31 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.04 0.64 7.62 -51.93 -0.40 0.25 16 33 H 0.08 1.10 6.73 -51.93 -0.35 0.75 16 34 H -0.01 -0.31 8.14 -51.93 -0.42 -0.74 16 35 H 0.06 1.62 4.61 -51.93 -0.24 1.38 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.09 1.96 6.49 -51.93 -0.34 1.62 16 38 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 39 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.38 5.56 9.06 45.56 0.41 5.97 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -33.95 365.17 -9.29 -43.24 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.22 Total: 5.53 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -3.68 Total: -13.77 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.32 Total: -38.45 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.59 Total: -17.43 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.95 -9.29 -43.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175708493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.530 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds