Wall clock time and date at job start Tue Mar 31 2020 12:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21296 * 120.00287 * 2 1 4 4 C 1.46788 * 119.99757 * 179.97438 * 2 1 3 5 5 C 1.40040 * 120.21000 * 0.02562 * 4 2 1 6 6 C 1.37871 * 119.84996 * 179.97438 * 5 4 2 7 7 F 1.35096 * 119.85342 * 180.02562 * 6 5 4 8 8 C 1.38812 * 120.28829 * 0.02562 * 6 5 4 9 9 C 1.38039 * 120.43284 * 359.97438 * 8 6 5 10 10 C 1.50700 * 119.93231 * 180.02562 * 9 8 6 11 11 N 1.46899 * 109.47261 * 265.00641 * 10 9 8 12 12 C 1.46908 * 110.99802 * 288.69071 * 11 10 9 13 13 C 1.50704 * 109.46773 * 172.02247 * 12 11 10 14 14 H 1.07997 * 120.00470 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99435 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99833 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46960 * 60.00208 * 17 15 13 19 19 H 1.48500 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47152 * 300.00441 * 17 15 13 21 21 C 1.46900 * 111.00246 * 164.74112 * 11 10 9 22 22 C 1.53000 * 109.46868 * 293.48731 * 21 11 10 23 23 C 1.53006 * 117.49778 * 117.12550 * 22 21 11 24 24 C 1.53001 * 117.49843 * 185.78237 * 22 21 11 25 25 C 1.38676 * 120.13874 * 0.28435 * 9 8 6 26 26 O 1.35644 * 120.14674 * 179.72364 * 25 9 8 27 27 H 1.08993 * 109.47093 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47168 * 300.00599 * 1 2 3 29 29 H 1.08998 * 109.46772 * 60.00119 * 1 2 3 30 30 H 1.07996 * 120.07527 * 0.02562 * 5 4 2 31 31 H 1.08007 * 119.78104 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47554 * 145.00538 * 10 9 8 33 33 H 1.08999 * 109.46929 * 25.00199 * 10 9 8 34 34 H 1.08998 * 109.46909 * 292.02318 * 12 11 10 35 35 H 1.09002 * 109.47004 * 52.02386 * 12 11 10 36 36 H 0.96998 * 119.99829 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.47361 * 173.48905 * 21 11 10 38 38 H 1.08994 * 109.47473 * 53.48752 * 21 11 10 39 39 H 1.09003 * 115.55073 * 331.45585 * 22 21 11 40 40 H 1.09001 * 117.49761 * 215.00600 * 23 22 21 41 41 H 1.09002 * 117.49645 * 0.02562 * 23 22 21 42 42 H 1.08992 * 117.50176 * 359.97438 * 24 22 21 43 43 H 1.09005 * 117.49364 * 145.00307 * 24 22 21 44 44 H 0.96699 * 114.00286 * 89.99133 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2410 -1.2713 0.0006 5 6 1.5452 -2.4866 0.0006 6 6 2.2420 -3.6762 0.0006 7 9 1.5708 -4.8487 0.0001 8 6 3.6301 -3.6746 0.0011 9 6 4.3278 -2.4835 0.0011 10 6 5.8348 -2.4948 0.0011 11 7 6.3254 -2.3780 1.3808 12 6 6.0967 -1.0260 1.9081 13 6 6.4294 -0.9971 3.3777 14 1 6.7764 -1.8932 3.8706 15 6 6.2917 0.1737 4.0927 16 7 5.8695 1.2651 3.4924 17 14 6.7033 0.2095 5.9145 18 1 8.1278 -0.1633 6.1074 19 1 6.4722 1.5761 6.4474 20 1 5.8368 -0.7561 6.6368 21 6 7.7456 -2.7434 1.4674 22 6 7.9085 -4.2331 1.1587 23 6 8.7328 -4.6133 -0.0730 24 6 9.3019 -4.8416 1.3296 25 6 3.6450 -1.2765 0.0065 26 8 4.3305 -0.1060 0.0122 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.4652 -2.4919 -0.0003 31 1 4.1677 -4.6113 0.0007 32 1 6.2045 -1.6558 -0.5882 33 1 6.1911 -3.4289 -0.4332 34 1 6.7321 -0.3169 1.3777 35 1 5.0509 -0.7531 1.7669 36 1 5.7723 2.0887 3.9955 37 1 8.1129 -2.5384 2.4729 38 1 8.3159 -2.1584 0.7459 39 1 7.0517 -4.8606 1.4043 40 1 8.4181 -5.4909 -0.6378 41 1 9.1592 -3.8022 -0.6631 42 1 10.1025 -4.1807 1.6614 43 1 9.3616 -5.8695 1.6874 44 1 4.5297 0.2374 -0.8695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175708493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:34 Heat of formation + Delta-G solvation = -82.439805 kcal Electronic energy + Delta-G solvation = -27749.723131 eV Core-core repulsion = 23775.312196 eV Total energy + Delta-G solvation = -3974.410935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.87403 -41.53825 -39.80314 -38.84445 -37.55356 -36.79204 -34.69419 -33.40243 -31.10493 -30.10900 -29.34376 -27.95170 -25.84653 -25.01086 -23.27665 -23.04386 -22.34122 -21.17703 -20.46083 -19.49136 -18.67655 -18.20245 -17.91616 -17.03471 -16.78086 -16.55240 -16.39098 -16.32400 -15.85516 -15.72401 -15.64925 -15.43587 -15.05918 -14.69779 -14.42281 -14.26548 -13.65250 -13.55571 -13.34799 -13.11301 -13.01920 -12.93041 -12.73187 -12.69260 -12.52838 -12.49234 -12.29937 -12.10610 -11.81879 -11.76434 -11.21444 -11.03517 -10.72431 -10.59318 -10.50627 -10.09122 -9.49906 -8.97961 -8.12893 -6.23429 -0.50418 0.03447 1.34530 1.36546 1.39926 1.47584 2.37936 2.43603 2.95483 2.97767 3.13409 3.20290 3.24453 3.39481 3.58696 3.85144 4.01387 4.12318 4.13339 4.16251 4.20697 4.30283 4.45396 4.56143 4.58434 4.65039 4.71376 4.82584 4.82816 4.89346 4.91357 4.95988 4.99145 5.08825 5.17830 5.30714 5.32698 5.38915 5.45404 5.58227 5.67626 5.69715 6.15645 6.42014 6.58648 6.69045 6.80170 6.95622 7.44306 8.95669 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.005687 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.561563 B = 4922.031847 C = 7153.724425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.386 3.614 3 O -0.485 6.485 4 C -0.197 4.197 5 C -0.083 4.083 6 C 0.069 3.931 7 F -0.134 7.134 8 C -0.084 4.084 9 C -0.096 4.096 10 C 0.102 3.898 11 N -0.533 5.533 12 C 0.214 3.786 13 C -0.529 4.529 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.924 5.924 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.270 1.270 21 C 0.097 3.903 22 C -0.154 4.154 23 C -0.170 4.170 24 C -0.175 4.175 25 C 0.154 3.846 26 O -0.479 6.479 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.185 0.815 31 H 0.161 0.839 32 H 0.027 0.973 33 H 0.105 0.895 34 H -0.052 1.052 35 H 0.038 0.962 36 H 0.259 0.741 37 H 0.058 0.942 38 H 0.014 0.986 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.310 -12.432 -11.983 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.266 3.734 3 O -0.362 6.362 4 C -0.199 4.199 5 C -0.101 4.101 6 C 0.050 3.950 7 F -0.113 7.113 8 C -0.103 4.103 9 C -0.097 4.097 10 C -0.026 4.026 11 N -0.256 5.256 12 C 0.088 3.912 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.196 4.196 16 N -0.564 5.564 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.031 4.031 22 C -0.172 4.172 23 C -0.207 4.207 24 C -0.212 4.212 25 C 0.108 3.892 26 O -0.290 6.290 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.202 0.798 31 H 0.179 0.821 32 H 0.046 0.954 33 H 0.123 0.877 34 H -0.034 1.034 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.128 0.872 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.337 -12.108 -11.066 17.969 hybrid contribution 0.863 1.208 0.170 1.494 sum -6.474 -10.899 -10.896 16.717 Atomic orbital electron populations 1.22261 0.89683 1.06800 1.05925 1.22952 0.93651 0.86422 0.70378 1.90623 1.73214 1.35212 1.37201 1.20968 0.93204 0.96427 1.09296 1.21561 1.02369 0.88595 0.97619 1.17408 0.89911 0.81559 1.06137 1.91512 1.80145 1.45334 1.94274 1.21260 0.92451 0.99157 0.97463 1.20074 0.96830 0.91792 1.00986 1.20886 0.89486 1.01708 0.90515 1.62110 1.17103 1.28560 1.17871 1.19457 0.96181 0.82723 0.92820 1.21531 1.44043 0.95517 0.95629 0.92383 1.25869 0.95473 0.95284 1.03017 1.70165 1.47525 1.00954 1.37742 0.85599 0.79083 0.77047 0.79871 1.19125 1.21042 1.19505 1.21493 0.88098 0.93555 0.99932 1.22217 0.95876 0.95096 1.04039 1.23129 1.03388 1.03583 0.90585 1.23010 0.95821 1.02271 1.00137 1.19016 0.89557 0.86157 0.94473 1.85145 1.75096 1.36058 1.32738 0.87096 0.88397 0.86931 0.79843 0.82129 0.95446 0.87652 1.03391 0.94420 0.93255 0.92319 0.96803 0.87297 0.86888 0.89390 0.89520 0.87209 0.75065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 10.19 71.24 0.73 -2.62 16 2 C 0.39 11.66 7.22 27.93 0.20 11.86 16 3 O -0.49 -19.58 15.91 17.89 0.28 -19.29 16 4 C -0.20 -5.99 5.88 -20.08 -0.12 -6.11 16 5 C -0.08 -1.90 9.42 22.62 0.21 -1.69 16 6 C 0.07 1.69 7.28 22.32 0.16 1.85 16 7 F -0.13 -3.06 17.26 44.97 0.78 -2.28 16 8 C -0.08 -2.26 9.63 22.36 0.22 -2.04 16 9 C -0.10 -3.16 5.17 -19.81 -0.10 -3.26 16 10 C 0.10 3.51 4.84 85.56 0.41 3.92 16 11 N -0.53 -22.93 4.46 -905.35 -4.04 -26.97 16 12 C 0.21 11.78 3.77 85.56 0.32 12.10 16 13 C -0.53 -31.39 8.35 25.60 0.21 -31.17 16 14 H 0.06 3.38 7.04 -2.91 -0.02 3.35 16 15 C 0.00 0.12 5.46 84.66 0.46 0.58 16 16 N -0.92 -59.19 13.29 21.45 0.28 -58.91 16 17 Si 0.96 46.63 29.54 68.60 2.03 48.65 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 21 C 0.10 3.78 5.08 86.30 0.44 4.22 16 22 C -0.15 -4.42 4.68 -10.79 -0.05 -4.47 16 23 C -0.17 -3.76 10.06 30.62 0.31 -3.45 16 24 C -0.17 -4.15 10.25 30.62 0.31 -3.83 16 25 C 0.15 5.61 5.65 22.90 0.13 5.74 16 26 O -0.48 -20.25 8.16 -68.62 -0.56 -20.81 16 27 H 0.11 1.22 5.60 -2.39 -0.01 1.21 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.18 2.62 5.92 -2.91 -0.02 2.60 16 31 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.03 1.00 7.62 -2.39 -0.02 0.98 16 33 H 0.11 2.94 6.73 -2.39 -0.02 2.92 16 34 H -0.05 -3.18 8.14 -2.39 -0.02 -3.20 16 35 H 0.04 2.25 4.61 -2.39 -0.01 2.24 16 36 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.06 2.63 6.49 -2.38 -0.02 2.61 16 38 H 0.01 0.54 7.85 -2.39 -0.02 0.53 16 39 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 1.99 8.03 -2.39 -0.02 1.97 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 43 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.39 13.08 9.06 -74.06 -0.67 12.41 16 Total: -1.00 -78.75 365.17 2.99 -75.76 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.37 Total: 22.24 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 3.85 Total: -18.39 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -3.75 Total: -85.88 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -0.28 Total: -40.10 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -78.75 2.99 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175708493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.679 kcal (2) G-P(sol) polarization free energy of solvation -78.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds