Wall clock time and date at job start Tue Mar 31 2020 13:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47063 * 2 1 4 4 C 1.34652 * 116.99842 * 180.02562 * 3 2 1 5 5 O 1.21518 * 120.00464 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99937 * 180.02562 * 4 3 2 7 7 C 1.40139 * 120.00584 * 185.17628 * 6 4 3 8 8 C 1.38849 * 120.00243 * 213.06760 * 7 6 4 9 9 C 1.38066 * 119.99797 * 180.29567 * 8 7 6 10 10 C 1.38856 * 119.99811 * 359.44713 * 9 8 7 11 11 N 1.40126 * 119.99733 * 180.27730 * 10 9 8 12 12 C 1.34775 * 119.99770 * 147.19396 * 11 10 9 13 13 O 1.21589 * 120.00112 * 354.78163 * 12 11 10 14 14 N 1.34780 * 120.00102 * 174.78689 * 12 11 10 15 15 C 1.46500 * 119.99679 * 359.97438 * 14 12 11 16 16 C 1.46497 * 120.00288 * 180.02562 * 14 12 11 17 17 C 1.50699 * 109.47301 * 89.99457 * 16 14 12 18 18 H 1.08000 * 119.99862 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99945 * 179.97438 * 17 16 14 20 20 N 1.31525 * 120.00179 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00335 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47067 * 89.99869 * 21 19 17 23 23 H 1.48496 * 109.47440 * 210.00007 * 21 19 17 24 24 H 1.48502 * 109.46870 * 330.00365 * 21 19 17 25 25 C 1.38857 * 120.00002 * 0.55137 * 10 9 8 26 26 C 1.38063 * 119.99697 * 359.72628 * 25 10 9 27 27 H 1.08999 * 109.46790 * 299.99791 * 1 2 3 28 28 H 1.08991 * 109.47211 * 59.99849 * 1 2 3 29 29 H 1.09001 * 109.46539 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47417 * 240.00364 * 2 1 3 31 31 H 1.09003 * 109.47523 * 120.00425 * 2 1 3 32 32 H 0.97001 * 120.00030 * 5.16739 * 6 4 3 33 33 H 1.07998 * 120.00122 * 0.02562 * 8 7 6 34 34 H 1.08000 * 119.99512 * 179.72236 * 9 8 7 35 35 H 0.96997 * 120.00375 * 327.19558 * 11 10 9 36 36 H 1.08998 * 109.47522 * 90.00498 * 15 14 12 37 37 H 1.09007 * 109.47261 * 210.00420 * 15 14 12 38 38 H 1.09001 * 109.47542 * 330.00192 * 15 14 12 39 39 H 1.09002 * 109.46881 * 210.00008 * 16 14 12 40 40 H 1.09000 * 109.47043 * 329.99591 * 16 14 12 41 41 H 0.96992 * 120.00037 * 180.02562 * 20 19 17 42 42 H 1.07992 * 119.99515 * 179.70285 * 25 10 9 43 43 H 1.08002 * 119.99177 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 -0.0005 5 8 4.0892 0.5818 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 5.2487 2.9765 -0.1101 8 6 5.8595 4.0437 0.5349 9 6 7.2228 4.2301 0.4214 10 6 7.9847 3.3437 -0.3283 11 7 9.3692 3.5296 -0.4387 12 6 10.1859 2.4628 -0.5451 13 8 9.7329 1.3384 -0.4501 14 7 11.5048 2.6423 -0.7566 15 6 12.0505 3.9970 -0.8715 16 6 12.3926 1.4827 -0.8729 17 6 12.4757 1.0563 -2.3159 18 1 11.9229 1.5954 -3.0710 19 6 13.2583 -0.0214 -2.6723 20 7 13.9319 -0.6777 -1.7528 21 14 13.3620 -0.5496 -4.4610 22 1 14.4814 0.1660 -5.1243 23 1 13.5993 -2.0137 -4.5319 24 1 12.0876 -0.2208 -5.1488 25 6 7.3738 2.2765 -0.9733 26 6 6.0097 2.0935 -0.8644 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.2764 3.5587 0.0764 33 1 5.2676 4.7304 1.1217 34 1 7.6972 5.0627 0.9194 35 1 9.7398 4.4260 -0.4385 36 1 12.3458 4.3546 0.1149 37 1 12.9202 3.9839 -1.5286 38 1 11.2917 4.6605 -1.2864 39 1 13.3870 1.7491 -0.5148 40 1 11.9984 0.6619 -0.2736 41 1 14.4827 -1.4356 -2.0036 42 1 7.9657 1.5900 -1.5602 43 1 5.5346 1.2636 -1.3665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176550269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:49 Heat of formation + Delta-G solvation = -65.144091 kcal Electronic energy + Delta-G solvation = -26212.778172 eV Core-core repulsion = 22259.037197 eV Total energy + Delta-G solvation = -3953.740975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.02253 -40.11007 -38.71240 -36.95169 -35.44455 -34.74604 -33.67749 -32.47839 -31.89586 -30.84282 -28.67655 -27.52125 -25.77416 -24.15724 -23.24563 -22.99642 -22.11940 -21.04885 -19.61779 -18.97357 -17.85005 -17.59682 -16.94055 -16.82106 -16.53873 -16.31661 -15.15433 -14.97088 -14.67081 -14.32189 -14.10916 -13.95512 -13.89216 -13.35238 -13.24175 -13.10516 -12.82559 -12.63433 -12.58940 -12.21915 -12.15343 -11.95831 -11.89160 -11.55383 -11.18374 -10.90186 -10.82262 -10.80419 -10.56111 -10.38070 -10.13579 -9.67268 -9.52499 -9.28968 -8.77080 -8.41728 -7.78348 -7.44081 -6.02421 -4.07163 1.30559 1.51462 1.86961 2.61859 3.20675 3.31705 3.38808 3.43993 3.70914 3.87426 4.11382 4.41588 4.55249 4.60967 4.64080 4.91489 4.96185 5.01610 5.17921 5.31537 5.41892 5.43962 5.49112 5.53580 5.54351 5.61443 5.84308 5.87668 6.06715 6.10070 6.15203 6.29576 6.47888 6.61392 6.77542 6.86109 7.14054 7.27062 7.36662 7.50836 7.67907 7.95343 8.08168 8.24442 8.58018 8.93609 9.24785 9.58168 11.05487 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.002617 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.075718 B =10696.177642 C =12072.766785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.371 6.371 4 C 0.644 3.356 5 O -0.548 6.548 6 N -0.647 5.647 7 C 0.123 3.877 8 C -0.119 4.119 9 C -0.139 4.139 10 C 0.174 3.826 11 N -0.696 5.696 12 C 0.696 3.304 13 O -0.565 6.565 14 N -0.612 5.612 15 C 0.083 3.917 16 C 0.259 3.741 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.101 4.101 26 C -0.095 4.095 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.414 0.586 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.401 0.599 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.263 0.737 42 H 0.146 0.854 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.354 12.479 4.522 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.006 3.994 3 O -0.286 6.286 4 C 0.398 3.602 5 O -0.435 6.435 6 N -0.299 5.299 7 C 0.030 3.970 8 C -0.140 4.140 9 C -0.161 4.161 10 C 0.078 3.922 11 N -0.346 5.346 12 C 0.397 3.603 13 O -0.440 6.440 14 N -0.348 5.348 15 C -0.062 4.062 16 C 0.140 3.860 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.122 4.122 26 C -0.116 4.116 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.250 0.750 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.238 0.762 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.164 0.836 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.158 10.875 4.578 25.103 hybrid contribution 0.131 0.413 -0.901 0.999 sum -22.027 11.287 3.677 25.022 Atomic orbital electron populations 1.21832 0.92446 1.03195 1.03491 1.23017 0.94803 0.78345 1.03214 1.86216 1.21736 1.33705 1.86950 1.18088 0.81322 0.84244 0.76580 1.91086 1.59383 1.39404 1.53589 1.41900 1.06358 1.06041 1.75605 1.17377 0.80609 0.98576 1.00452 1.20459 0.94218 0.98862 1.00473 1.20569 0.93218 1.01626 1.00656 1.17611 0.82431 0.96356 0.95845 1.43027 1.04261 1.09451 1.77837 1.15951 0.81660 0.83957 0.78698 1.90927 1.74475 1.21942 1.56700 1.47508 1.05671 1.08415 1.73167 1.21601 0.99875 0.83876 1.00805 1.19262 0.87335 0.81949 0.97481 1.21443 1.27775 1.14160 0.93133 0.92466 1.24935 0.95448 0.95988 0.97772 1.69933 1.29868 1.20703 1.32865 0.86488 0.78284 0.77825 0.84772 1.20694 1.21083 1.19895 1.21248 0.93615 0.98153 0.99165 1.21033 0.93445 0.99222 0.97853 0.91473 0.91450 0.89859 0.90857 0.90893 0.75024 0.85495 0.85367 0.76209 0.93680 0.90258 0.93050 0.94770 0.93610 0.92706 0.83630 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.16 0.38 -0.43 16 2 C 0.08 0.68 6.19 37.16 0.23 0.91 16 3 O -0.37 -3.87 10.27 -40.36 -0.41 -4.29 16 4 C 0.64 8.29 8.49 54.05 0.46 8.75 16 5 O -0.55 -9.14 13.80 -19.29 -0.27 -9.41 16 6 N -0.65 -6.93 5.36 -14.23 -0.08 -7.01 16 7 C 0.12 1.59 6.29 -83.61 -0.53 1.07 16 8 C -0.12 -1.31 9.95 -39.42 -0.39 -1.70 16 9 C -0.14 -1.68 9.95 -39.42 -0.39 -2.07 16 10 C 0.17 2.75 6.29 -83.61 -0.53 2.23 16 11 N -0.70 -11.28 5.18 -14.18 -0.07 -11.36 16 12 C 0.70 15.00 8.02 -86.92 -0.70 14.30 16 13 O -0.56 -14.74 13.59 5.29 0.07 -14.67 16 14 N -0.61 -13.06 2.86 -188.74 -0.54 -13.60 16 15 C 0.08 1.27 10.16 59.85 0.61 1.87 16 16 C 0.26 6.82 5.16 -5.20 -0.03 6.79 16 17 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 21 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.10 -1.79 8.65 -39.42 -0.34 -2.13 16 26 C -0.09 -1.51 8.65 -39.42 -0.34 -1.85 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.41 2.90 8.92 -40.82 -0.36 2.53 16 33 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.40 4.98 6.62 -40.82 -0.27 4.70 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 38 H 0.05 0.62 6.45 -51.93 -0.33 0.29 16 39 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.05 1.37 7.42 -51.93 -0.39 0.98 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.15 3.03 6.39 -52.49 -0.34 2.69 16 43 H 0.14 2.26 6.39 -52.49 -0.34 1.93 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -36.67 367.56 -7.82 -44.49 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.79 Total: 5.20 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: -1.98 Total: 14.07 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.05 Total: -58.00 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.61 Total: -28.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.67 -7.82 -44.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176550269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.654 kcal (2) G-P(sol) polarization free energy of solvation -36.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds