Wall clock time and date at job start Tue Mar 31 2020 13:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47063 * 2 1 4 4 C 1.34652 * 116.99842 * 180.02562 * 3 2 1 5 5 O 1.21518 * 120.00464 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99937 * 180.02562 * 4 3 2 7 7 C 1.40139 * 120.00584 * 185.17628 * 6 4 3 8 8 C 1.38849 * 120.00243 * 213.06760 * 7 6 4 9 9 C 1.38066 * 119.99797 * 180.29567 * 8 7 6 10 10 C 1.38856 * 119.99811 * 359.44713 * 9 8 7 11 11 N 1.40126 * 119.99733 * 180.27730 * 10 9 8 12 12 C 1.34775 * 119.99770 * 147.19396 * 11 10 9 13 13 O 1.21589 * 120.00112 * 354.78163 * 12 11 10 14 14 N 1.34780 * 120.00102 * 174.78689 * 12 11 10 15 15 C 1.46500 * 119.99679 * 359.97438 * 14 12 11 16 16 C 1.46497 * 120.00288 * 180.02562 * 14 12 11 17 17 C 1.50699 * 109.47301 * 89.99457 * 16 14 12 18 18 H 1.08000 * 119.99862 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99945 * 179.97438 * 17 16 14 20 20 N 1.31525 * 120.00179 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00335 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47067 * 89.99869 * 21 19 17 23 23 H 1.48496 * 109.47440 * 210.00007 * 21 19 17 24 24 H 1.48502 * 109.46870 * 330.00365 * 21 19 17 25 25 C 1.38857 * 120.00002 * 0.55137 * 10 9 8 26 26 C 1.38063 * 119.99697 * 359.72628 * 25 10 9 27 27 H 1.08999 * 109.46790 * 299.99791 * 1 2 3 28 28 H 1.08991 * 109.47211 * 59.99849 * 1 2 3 29 29 H 1.09001 * 109.46539 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47417 * 240.00364 * 2 1 3 31 31 H 1.09003 * 109.47523 * 120.00425 * 2 1 3 32 32 H 0.97001 * 120.00030 * 5.16739 * 6 4 3 33 33 H 1.07998 * 120.00122 * 0.02562 * 8 7 6 34 34 H 1.08000 * 119.99512 * 179.72236 * 9 8 7 35 35 H 0.96997 * 120.00375 * 327.19558 * 11 10 9 36 36 H 1.08998 * 109.47522 * 90.00498 * 15 14 12 37 37 H 1.09007 * 109.47261 * 210.00420 * 15 14 12 38 38 H 1.09001 * 109.47542 * 330.00192 * 15 14 12 39 39 H 1.09002 * 109.46881 * 210.00008 * 16 14 12 40 40 H 1.09000 * 109.47043 * 329.99591 * 16 14 12 41 41 H 0.96992 * 120.00037 * 180.02562 * 20 19 17 42 42 H 1.07992 * 119.99515 * 179.70285 * 25 10 9 43 43 H 1.08002 * 119.99177 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 -0.0005 5 8 4.0892 0.5818 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 5.2487 2.9765 -0.1101 8 6 5.8595 4.0437 0.5349 9 6 7.2228 4.2301 0.4214 10 6 7.9847 3.3437 -0.3283 11 7 9.3692 3.5296 -0.4387 12 6 10.1859 2.4628 -0.5451 13 8 9.7329 1.3384 -0.4501 14 7 11.5048 2.6423 -0.7566 15 6 12.0505 3.9970 -0.8715 16 6 12.3926 1.4827 -0.8729 17 6 12.4757 1.0563 -2.3159 18 1 11.9229 1.5954 -3.0710 19 6 13.2583 -0.0214 -2.6723 20 7 13.9319 -0.6777 -1.7528 21 14 13.3620 -0.5496 -4.4610 22 1 14.4814 0.1660 -5.1243 23 1 13.5993 -2.0137 -4.5319 24 1 12.0876 -0.2208 -5.1488 25 6 7.3738 2.2765 -0.9733 26 6 6.0097 2.0935 -0.8644 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.2764 3.5587 0.0764 33 1 5.2676 4.7304 1.1217 34 1 7.6972 5.0627 0.9194 35 1 9.7398 4.4260 -0.4385 36 1 12.3458 4.3546 0.1149 37 1 12.9202 3.9839 -1.5286 38 1 11.2917 4.6605 -1.2864 39 1 13.3870 1.7491 -0.5148 40 1 11.9984 0.6619 -0.2736 41 1 14.4827 -1.4356 -2.0036 42 1 7.9657 1.5900 -1.5602 43 1 5.5346 1.2636 -1.3665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176550269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:48 Heat of formation + Delta-G solvation = -92.073708 kcal Electronic energy + Delta-G solvation = -26213.945928 eV Core-core repulsion = 22259.037197 eV Total energy + Delta-G solvation = -3954.908731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.07190 -41.51611 -39.91858 -37.99861 -36.82101 -36.35153 -35.13646 -34.40889 -32.55473 -31.95585 -30.20746 -29.08553 -27.32687 -25.41706 -24.65732 -24.09608 -23.26712 -22.13058 -21.05669 -20.07036 -19.24864 -18.72034 -18.60476 -18.27853 -17.83375 -17.33171 -16.81167 -16.57159 -16.04793 -15.68224 -15.35236 -15.06629 -14.86025 -14.83043 -14.56453 -14.24479 -13.94381 -13.80848 -13.74586 -13.55090 -13.46887 -13.12978 -13.02741 -12.82968 -12.73566 -12.56045 -12.52873 -12.20993 -11.97614 -11.74168 -11.61096 -11.52752 -11.05361 -10.75559 -10.64112 -9.91241 -9.49995 -8.68087 -8.21996 -6.37078 0.16508 0.42274 0.96758 1.34803 1.38588 1.48251 1.56067 1.75707 2.18832 2.38372 2.87292 3.04328 3.06281 3.10659 3.90836 3.99487 4.01859 4.06507 4.28715 4.31100 4.36601 4.40845 4.47255 4.67087 4.70530 4.77645 4.85201 4.91915 4.97984 5.08639 5.10413 5.19521 5.25603 5.31353 5.36919 5.49063 5.54106 5.57795 5.79050 6.04880 6.05898 6.11006 6.24038 6.71609 7.06755 7.14975 7.29959 7.63969 8.84150 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.002617 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.075718 B =10696.177642 C =12072.766785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 O -0.362 6.362 4 C 0.642 3.358 5 O -0.593 6.593 6 N -0.629 5.629 7 C 0.127 3.873 8 C -0.098 4.098 9 C -0.115 4.115 10 C 0.148 3.852 11 N -0.672 5.672 12 C 0.690 3.310 13 O -0.623 6.623 14 N -0.620 5.620 15 C 0.077 3.923 16 C 0.275 3.725 17 C -0.541 4.541 18 H 0.051 0.949 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.967 3.033 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.277 1.277 25 C -0.130 4.130 26 C -0.114 4.114 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.436 0.564 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.423 0.577 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.032 0.968 40 H -0.003 1.003 41 H 0.267 0.733 42 H 0.097 0.903 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.210 16.056 5.032 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.003 4.003 3 O -0.276 6.276 4 C 0.396 3.604 5 O -0.483 6.483 6 N -0.283 5.283 7 C 0.034 3.966 8 C -0.118 4.118 9 C -0.136 4.136 10 C 0.053 3.947 11 N -0.324 5.324 12 C 0.392 3.608 13 O -0.503 6.503 14 N -0.355 5.355 15 C -0.065 4.065 16 C 0.153 3.847 17 C -0.580 4.580 18 H 0.069 0.931 19 C -0.192 4.192 20 N -0.567 5.567 21 Si 0.792 3.208 22 H -0.185 1.185 23 H -0.207 1.207 24 H -0.202 1.202 25 C -0.151 4.151 26 C -0.135 4.135 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.276 0.724 33 H 0.198 0.802 34 H 0.191 0.809 35 H 0.263 0.737 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.050 0.950 40 H 0.016 0.984 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.061 14.579 5.091 28.591 hybrid contribution 0.571 -0.678 -1.000 1.336 sum -23.490 13.901 4.091 27.600 Atomic orbital electron populations 1.21841 0.89560 1.04602 1.04033 1.23309 0.96945 0.77435 1.02644 1.86249 1.20036 1.34839 1.86427 1.18336 0.81809 0.84311 0.75935 1.91076 1.60586 1.41082 1.55579 1.41742 1.05826 1.06187 1.74549 1.17484 0.81406 0.98278 0.99470 1.20995 0.94083 0.97919 0.98792 1.21015 0.93317 1.00983 0.98327 1.17845 0.82143 0.97230 0.97526 1.42587 1.04040 1.08893 1.76854 1.16168 0.81956 0.84342 0.78356 1.90893 1.75587 1.24767 1.59059 1.47362 1.05370 1.09486 1.73238 1.21931 1.00692 0.81068 1.02859 1.18704 0.87610 0.82705 0.95656 1.21699 1.27705 1.14636 0.93977 0.93093 1.25847 0.94997 0.95918 1.02437 1.70048 1.30470 1.21167 1.35038 0.85422 0.78593 0.77580 0.79238 1.18476 1.20670 1.20164 1.20934 0.94222 0.99104 1.00866 1.20852 0.93119 0.99996 0.99502 0.90768 0.90979 0.88015 0.91674 0.91434 0.72405 0.80245 0.80934 0.73664 0.90632 0.90852 0.89368 0.95029 0.98449 0.92384 0.88475 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 10.29 71.98 0.74 -0.55 16 2 C 0.07 1.18 6.19 71.98 0.45 1.62 16 3 O -0.36 -7.20 10.27 -55.62 -0.57 -7.77 16 4 C 0.64 16.31 8.49 129.79 1.10 17.41 16 5 O -0.59 -20.71 13.80 19.78 0.27 -20.43 16 6 N -0.63 -12.18 5.36 -429.32 -2.30 -14.48 16 7 C 0.13 3.08 6.29 38.11 0.24 3.32 16 8 C -0.10 -1.68 9.95 22.38 0.22 -1.46 16 9 C -0.12 -2.30 9.95 22.38 0.22 -2.07 16 10 C 0.15 4.58 6.29 38.11 0.24 4.82 16 11 N -0.67 -21.25 5.18 -317.05 -1.64 -22.89 16 12 C 0.69 30.82 8.02 179.05 1.44 32.26 16 13 O -0.62 -35.05 13.59 -4.00 -0.05 -35.11 16 14 N -0.62 -27.02 2.86 -869.31 -2.48 -29.50 16 15 C 0.08 2.21 10.16 127.77 1.30 3.51 16 16 C 0.27 15.21 5.16 85.63 0.44 15.65 16 17 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 18 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 19 C 0.01 0.41 5.46 84.65 0.46 0.87 16 20 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 21 Si 0.97 46.21 29.54 68.60 2.03 48.24 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 25 C -0.13 -4.92 8.65 22.38 0.19 -4.73 16 26 C -0.11 -3.82 8.65 22.37 0.19 -3.63 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.44 4.51 8.92 -92.71 -0.83 3.68 16 33 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.42 9.22 6.62 -92.71 -0.61 8.61 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 2.23 8.07 -2.38 -0.02 2.21 16 38 H 0.09 1.87 6.45 -2.39 -0.02 1.85 16 39 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 40 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.10 4.58 6.39 -2.91 -0.02 4.56 16 43 H 0.11 4.18 6.39 -2.91 -0.02 4.16 16 Total: -1.00 -88.75 367.56 2.62 -86.13 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.39 Total: 17.50 kcal Atomic # 6 Polarization: 27.76 SS G_CDS: 7.48 Total: 35.24 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -6.14 Total: -123.80 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -0.35 Total: -63.31 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -88.75 2.62 -86.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176550269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.947 kcal (2) G-P(sol) polarization free energy of solvation -88.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds